File Info

Filename
V4_0001_RNA_0005_23H5VFLT4_s28.attempt1.command.log
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0003/B23H5VFLT4/nfcore_rnafusion__2cae617--20260515-145204/QC/preseq/log/V4_0001_RNA_0005_23H5VFLT4_s28.attempt1.command.log
Size
19.1 KB
Published
May 16, 2026 3:52 AM
PAIRED_END_BAM_INPUT
Processed 1000000 records
Processed 2000000 records
Processed 3000000 records
Processed 4000000 records
Processed 5000000 records
Processed 6000000 records
Processed 7000000 records
Processed 8000000 records
Processed 9000000 records
Processed 10000000 records
Processed 11000000 records
Processed 12000000 records
Processed 13000000 records
Processed 14000000 records
Processed 15000000 records
Processed 16000000 records
Processed 17000000 records
Processed 18000000 records
Processed 19000000 records
Processed 20000000 records
Processed 21000000 records
Processed 22000000 records
Processed 23000000 records
Processed 24000000 records
Processed 25000000 records
Processed 26000000 records
Processed 27000000 records
Processed 28000000 records
Processed 29000000 records
Processed 30000000 records
Processed 31000000 records
Processed 32000000 records
Processed 33000000 records
Processed 34000000 records
Processed 35000000 records
Processed 36000000 records
Processed 37000000 records
Processed 38000000 records
Processed 39000000 records
Processed 40000000 records
Processed 41000000 records
Processed 42000000 records
Processed 43000000 records
Processed 44000000 records
Processed 45000000 records
Processed 46000000 records
Processed 47000000 records
Processed 48000000 records
Processed 49000000 records
Processed 50000000 records
Processed 51000000 records
Processed 52000000 records
Processed 53000000 records
Processed 54000000 records
Processed 55000000 records
Processed 56000000 records
Processed 57000000 records
Processed 58000000 records
Processed 59000000 records
Processed 60000000 records
Processed 61000000 records
Processed 62000000 records
Processed 63000000 records
Processed 64000000 records
Processed 65000000 records
Processed 66000000 records
Processed 67000000 records
Processed 68000000 records
Processed 69000000 records
Processed 70000000 records
Processed 71000000 records
Processed 72000000 records
Processed 73000000 records
Processed 74000000 records
Processed 75000000 records
Processed 76000000 records
Processed 77000000 records
Processed 78000000 records
Processed 79000000 records
Processed 80000000 records
Processed 81000000 records
Processed 82000000 records
Processed 83000000 records
Processed 84000000 records
Processed 85000000 records
Processed 86000000 records
Processed 87000000 records
Processed 88000000 records
Processed 89000000 records
Processed 90000000 records
Processed 91000000 records
Processed 92000000 records
Processed 93000000 records
Processed 94000000 records
Processed 95000000 records
Processed 96000000 records
Processed 97000000 records
Processed 98000000 records
Processed 99000000 records
Processed 100000000 records
Processed 101000000 records
Processed 102000000 records
Processed 103000000 records
Processed 104000000 records
Processed 105000000 records
Processed 106000000 records
Processed 107000000 records
Processed 108000000 records
Processed 109000000 records
Processed 110000000 records
Processed 111000000 records
Processed 112000000 records
Processed 113000000 records
Processed 114000000 records
Processed 115000000 records
Processed 116000000 records
Processed 117000000 records
Processed 118000000 records
Processed 119000000 records
Processed 120000000 records
Processed 121000000 records
Processed 122000000 records
Processed 123000000 records
Processed 124000000 records
Processed 125000000 records
Processed 126000000 records
Processed 127000000 records
Processed 128000000 records
Processed 129000000 records
Processed 130000000 records
Processed 131000000 records
Processed 132000000 records
Processed 133000000 records
Processed 134000000 records
Processed 135000000 records
Processed 136000000 records
Processed 137000000 records
Processed 138000000 records
Processed 139000000 records
Processed 140000000 records
Processed 141000000 records
Processed 142000000 records
Processed 143000000 records
Processed 144000000 records
Processed 145000000 records
Processed 146000000 records
Processed 147000000 records
Processed 148000000 records
Processed 149000000 records
Processed 150000000 records
Processed 151000000 records
Processed 152000000 records
Processed 153000000 records
Processed 154000000 records
Processed 155000000 records
Processed 156000000 records
Processed 157000000 records
Processed 158000000 records
Processed 159000000 records
Processed 160000000 records
Processed 161000000 records
Processed 162000000 records
Processed 163000000 records
Processed 164000000 records
Processed 165000000 records
Processed 166000000 records
Processed 167000000 records
Processed 168000000 records
Processed 169000000 records
Processed 170000000 records
Processed 171000000 records
Processed 172000000 records
Processed 173000000 records
Processed 174000000 records
Processed 175000000 records
Processed 176000000 records
Processed 177000000 records
Processed 178000000 records
Processed 179000000 records
Processed 180000000 records
Processed 181000000 records
Processed 182000000 records
Processed 183000000 records
Processed 184000000 records
Processed 185000000 records
Processed 186000000 records
Processed 187000000 records
Processed 188000000 records
Processed 189000000 records
Processed 190000000 records
Processed 191000000 records
Processed 192000000 records
Processed 193000000 records
Processed 194000000 records
Processed 195000000 records
Processed 196000000 records
Processed 197000000 records
Processed 198000000 records
Processed 199000000 records
Processed 200000000 records
Processed 201000000 records
Processed 202000000 records
Processed 203000000 records
Processed 204000000 records
Processed 205000000 records
Processed 206000000 records
Processed 207000000 records
Processed 208000000 records
Processed 209000000 records
Processed 210000000 records
Processed 211000000 records
Processed 212000000 records
Processed 213000000 records
Processed 214000000 records
Processed 215000000 records
Processed 216000000 records
Processed 217000000 records
Processed 218000000 records
Processed 219000000 records
Processed 220000000 records
Processed 221000000 records
Processed 222000000 records
Processed 223000000 records
Processed 224000000 records
Processed 225000000 records
Processed 226000000 records
Processed 227000000 records
Processed 228000000 records
Processed 229000000 records
Processed 230000000 records
Processed 231000000 records
Processed 232000000 records
Processed 233000000 records
Processed 234000000 records
Processed 235000000 records
Processed 236000000 records
Processed 237000000 records
Processed 238000000 records
Processed 239000000 records
Processed 240000000 records
Processed 241000000 records
Processed 242000000 records
Processed 243000000 records
Processed 244000000 records
Processed 245000000 records
Processed 246000000 records
Processed 247000000 records
Processed 248000000 records
Processed 249000000 records
Processed 250000000 records
Processed 251000000 records
Processed 252000000 records
Processed 253000000 records
Processed 254000000 records
Processed 255000000 records
Processed 256000000 records
Processed 257000000 records
Processed 258000000 records
Processed 259000000 records
Processed 260000000 records
Processed 261000000 records
Processed 262000000 records
Processed 263000000 records
Processed 264000000 records
Processed 265000000 records
Processed 266000000 records
Processed 267000000 records
Processed 268000000 records
Processed 269000000 records
Processed 270000000 records
Processed 271000000 records
Processed 272000000 records
Processed 273000000 records
Processed 274000000 records
Processed 275000000 records
Processed 276000000 records
Processed 277000000 records
Processed 278000000 records
Processed 279000000 records
Processed 280000000 records
Processed 281000000 records
Processed 282000000 records
Processed 283000000 records
Processed 284000000 records
Processed 285000000 records
Processed 286000000 records
Processed 287000000 records
Processed 288000000 records
Processed 289000000 records
Processed 290000000 records
Processed 291000000 records
Processed 292000000 records
Processed 293000000 records
Processed 294000000 records
Processed 295000000 records
Processed 296000000 records
Processed 297000000 records
Processed 298000000 records
Processed 299000000 records
Processed 300000000 records
Processed 301000000 records
Processed 302000000 records
Processed 303000000 records
Processed 304000000 records
Processed 305000000 records
Processed 306000000 records
Processed 307000000 records
Processed 308000000 records
Processed 309000000 records
Processed 310000000 records
Processed 311000000 records
Processed 312000000 records
Processed 313000000 records
Processed 314000000 records
Processed 315000000 records
Processed 316000000 records
Processed 317000000 records
Processed 318000000 records
Processed 319000000 records
Processed 320000000 records
Processed 321000000 records
Processed 322000000 records
Processed 323000000 records
Processed 324000000 records
Processed 325000000 records
Processed 326000000 records
Processed 327000000 records
Processed 328000000 records
Processed 329000000 records
Processed 330000000 records
Processed 331000000 records
Processed 332000000 records
Processed 333000000 records
Processed 334000000 records
Processed 335000000 records
Processed 336000000 records
Processed 337000000 records
Processed 338000000 records
Processed 339000000 records
Processed 340000000 records
Processed 341000000 records
Processed 342000000 records
Processed 343000000 records
Processed 344000000 records
Processed 345000000 records
Processed 346000000 records
Processed 347000000 records
Processed 348000000 records
Processed 349000000 records
Processed 350000000 records
Processed 351000000 records
Processed 352000000 records
Processed 353000000 records
Processed 354000000 records
Processed 355000000 records
Processed 356000000 records
Processed 357000000 records
Processed 358000000 records
Processed 359000000 records
Processed 360000000 records
Processed 361000000 records
Processed 362000000 records
Processed 363000000 records
Processed 364000000 records
Processed 365000000 records
Processed 366000000 records
Processed 367000000 records
Processed 368000000 records
Processed 369000000 records
Processed 370000000 records
Processed 371000000 records
Processed 372000000 records
Processed 373000000 records
Processed 374000000 records
Processed 375000000 records
Processed 376000000 records
Processed 377000000 records
Processed 378000000 records
Processed 379000000 records
Processed 380000000 records
Processed 381000000 records
Processed 382000000 records
Processed 383000000 records
Processed 384000000 records
Processed 385000000 records
Processed 386000000 records
Processed 387000000 records
Processed 388000000 records
Processed 389000000 records
Processed 390000000 records
Processed 391000000 records
Processed 392000000 records
Processed 393000000 records
Processed 394000000 records
Processed 395000000 records
Processed 396000000 records
Processed 397000000 records
Processed 398000000 records
Processed 399000000 records
Processed 400000000 records
Processed 401000000 records
Processed 402000000 records
Processed 403000000 records
Processed 404000000 records
Processed 405000000 records
Processed 406000000 records
Processed 407000000 records
Processed 408000000 records
Processed 409000000 records
Processed 410000000 records
Processed 411000000 records
Processed 412000000 records
Processed 413000000 records
Processed 414000000 records
Processed 415000000 records
Processed 416000000 records
Processed 417000000 records
Processed 418000000 records
Processed 419000000 records
Processed 420000000 records
Processed 421000000 records
Processed 422000000 records
Processed 423000000 records
Processed 424000000 records
Processed 425000000 records
Processed 426000000 records
Processed 427000000 records
Processed 428000000 records
Processed 429000000 records
Processed 430000000 records
Processed 431000000 records
Processed 432000000 records
Processed 433000000 records
Processed 434000000 records
Processed 435000000 records
Processed 436000000 records
Processed 437000000 records
Processed 438000000 records
Processed 439000000 records
Processed 440000000 records
Processed 441000000 records
Processed 442000000 records
Processed 443000000 records
Processed 444000000 records
Processed 445000000 records
Processed 446000000 records
Processed 447000000 records
Processed 448000000 records
Processed 449000000 records
Processed 450000000 records
Processed 451000000 records
Processed 452000000 records
Processed 453000000 records
Processed 454000000 records
Processed 455000000 records
Processed 456000000 records
Processed 457000000 records
Processed 458000000 records
Processed 459000000 records
Processed 460000000 records
Processed 461000000 records
Processed 462000000 records
Processed 463000000 records
Processed 464000000 records
Processed 465000000 records
Processed 466000000 records
Processed 467000000 records
paired = 232360633
unpaired = 3179694
MERGED PAIRED END READS = 232360633
MATES PROCESSED = 467900960
TOTAL READS     = 235540327
DISTINCT READS  = 7.31078e+07
DISTINCT COUNTS = 908
MAX COUNT       = 486692
COUNTS OF 1     = 2.89384e+07
MAX TERMS       = 100
OBSERVED COUNTS (486693)
1	28938422
2	14000809
3	8728113
4	6019645
5	4254999
6	3020550
7	2145824
8	1529070
9	1092361
10	788691
11	576942
12	425025
13	317643
14	240385
15	184476
16	143420
17	112850
18	89302
19	71960
20	58427
21	47478
22	39825
23	33044
24	27562
25	23330
26	19683
27	16726
28	14669
29	12525
30	10966
31	9530
32	8369
33	7437
34	6586
35	5975
36	5261
37	4897
38	4362
39	4040
40	3676
41	3197
42	3050
43	2656
44	2550
45	2373
46	2236
47	2015
48	1835
49	1814
50	1633
51	1510
52	1388
53	1322
54	1354
55	1213
56	1128
57	1047
58	980
59	949
60	867
61	873
62	799
63	733
64	727
65	707
66	680
67	597
68	610
69	594
70	555
71	504
72	514
73	506
74	421
75	491
76	430
77	440
78	404
79	394
80	393
81	379
82	339
83	328
84	333
85	317
86	299
87	303
88	291
89	265
90	263
91	283
92	253
93	228
94	220
95	201
96	216
97	204
98	214
99	218
100	171
101	180
102	177
103	213
104	176
105	173
106	174
107	158
108	150
109	165
110	150
111	138
112	122
113	136
114	109
115	151
116	131
117	106
118	126
119	149
120	128
121	119
122	105
123	111
124	98
125	100
126	111
127	114
128	80
129	87
130	96
131	103
132	83
133	68
134	98
135	88
136	90
137	101
138	74
139	82
140	91
141	69
142	88
143	64
144	72
145	58
146	70
147	60
148	63
149	76
150	66
151	70
152	60
153	57
154	61
155	53
156	50
157	53
158	54
159	49
160	40
161	62
162	61
163	60
164	67
165	44
166	51
167	41
168	50
169	53
170	45
171	46
172	60
173	58
174	38
175	51
176	36
177	40
178	41
179	47
180	26
181	36
182	46
183	38
184	37
185	34
186	33
187	33
188	33
189	47
190	28
191	28
192	34
193	32
194	38
195	30
196	32
197	24
198	34
199	25
200	29
201	36
202	28
203	24
204	38
205	35
206	29
207	19
208	31
209	16
210	22
211	20
212	13
213	25
214	25
215	21
216	27
217	25
218	22
219	23
220	22
221	19
222	21
223	23
224	21
225	21
226	23
227	19
228	16
229	20
230	20
231	23
232	17
233	24
234	23
235	21
236	18
237	15
238	14
239	19
240	14
241	19
242	15
243	15
244	25
245	22
246	17
247	21
248	14
249	14
250	12
251	11
252	13
253	11
254	22
255	10
256	12
257	18
258	9
259	11
260	12
261	13
262	17
263	17
264	27
265	16
266	11
267	9
268	14
269	12
270	15
271	18
272	7
273	15
274	19
275	15
276	21
277	12
278	6
279	16
280	13
281	8
282	17
283	11
284	15
285	11
286	8
287	11
288	9
289	14
290	12
291	10
292	11
293	7
294	11
295	12
296	8
297	13
298	12
299	9
300	8
301	7
302	12
303	10
304	8
305	11
306	11
307	7
308	7
309	10
310	16
311	6
312	8
313	7
314	9
315	12
316	4
317	8
318	10
319	12
320	9
321	10
322	4
323	11
324	4
325	5
326	9
327	4
328	12
329	8
330	8
331	5
332	7
333	11
334	7
335	10
336	4
337	5
338	10
339	10
340	12
341	9
342	8
343	9
344	5
345	6
346	7
347	4
348	6
349	4
350	7
351	9
352	5
353	3
354	9
355	8
356	6
357	3
358	5
359	8
360	7
361	5
362	4
363	4
364	1
365	11
366	5
367	9
368	5
369	3
370	5
371	7
372	2
373	6
374	2
375	4
376	6
377	4
378	5
379	5
380	6
381	4
382	6
383	5
384	6
385	7
386	5
387	4
388	2
389	3
390	4
391	7
392	1
393	3
394	6
395	2
396	5
397	7
398	6
399	3
400	6
401	3
402	9
403	4
404	4
405	4
406	4
407	3
408	4
409	4
410	3
411	3
412	4
413	4
414	4
415	9
416	6
417	7
418	3
419	2
420	2
421	1
422	3
423	3
424	4
425	3
426	2
427	6
428	5
429	4
430	4
432	3
433	4
434	1
436	2
437	3
439	5
440	4
441	3
442	1
443	3
444	4
445	2
446	4
447	3
448	5
449	2
450	5
452	2
453	1
454	3
455	4
456	2
457	6
458	7
459	5
460	6
461	5
462	5
463	2
464	2
465	5
466	3
467	1
468	4
469	2
470	1
471	6
473	4
474	4
476	5
477	5
478	4
479	1
480	2
481	4
482	4
483	7
484	6
485	2
486	1
487	1
488	2
489	2
490	3
492	7
493	3
494	6
495	2
496	3
498	5
499	1
500	3
501	4
502	5
503	2
504	2
506	3
507	5
508	2
509	4
510	2
511	2
512	5
513	8
514	4
515	1
516	4
518	3
519	2
521	7
522	4
523	6
524	3
525	4
526	1
527	1
528	2
529	2
530	1
531	4
532	1
533	1
534	5
535	1
538	2
539	3
540	3
541	3
542	4
543	1
544	2
545	2
546	1
547	3
548	1
549	1
551	2
552	2
553	4
554	3
555	2
557	1
558	2
559	1
560	2
561	1
562	5
563	1
564	1
565	2
566	3
567	4
568	1
569	5
570	2
571	1
572	3
573	5
574	1
575	1
577	4
579	3
582	2
583	3
584	2
585	1
586	1
587	1
588	1
589	4
590	2
591	1
592	2
593	2
594	3
596	1
597	2
598	2
600	1
602	2
603	1
604	1
605	2
606	3
608	1
609	3
611	1
612	1
615	1
616	2
617	1
622	2
625	1
627	1
628	1
629	1
630	4
631	1
632	1
634	1
635	1
638	2
640	1
642	1
643	1
644	1
645	2
646	1
647	2
648	3
649	2
650	2
653	1
654	2
655	1
656	3
657	3
659	2
660	2
661	2
663	1
664	2
666	1
667	2
668	3
674	1
675	2
678	2
680	1
684	2
685	1
687	2
688	1
689	1
691	2
692	1
695	2
696	2
697	2
698	3
700	1
701	1
704	1
706	1
708	1
711	1
712	2
713	3
714	1
715	3
716	1
719	3
720	1
721	1
722	1
723	3
724	1
725	1
726	1
727	1
728	2
731	1
734	3
735	3
736	1
738	2
739	1
740	1
742	1
744	1
745	1
746	1
747	1
750	2
755	1
757	1
758	1
759	1
761	1
762	3
767	2
771	1
772	2
777	1
778	1
779	2
780	1
786	1
787	1
789	1
790	2
791	2
793	2
794	1
796	1
797	1
800	1
802	1
803	1
804	2
805	1
809	2
810	3
813	2
814	1
818	2
819	1
820	1
823	2
824	1
825	1
828	1
831	2
832	1
837	2
838	1
841	2
842	1
848	2
850	1
851	3
855	1
859	2
861	2
863	1
867	1
869	1
872	3
873	1
878	1
879	1
884	1
885	2
886	1
890	1
897	1
899	1
903	1
905	2
912	1
914	1
917	1
918	1
923	1
926	1
927	1
936	1
943	1
945	2
949	1
951	1
953	1
958	1
960	3
963	1
968	1
970	1
976	1
981	2
985	1
990	2
991	1
992	2
993	1
996	1
997	1
1003	1
1012	1
1013	1
1015	1
1016	2
1028	1
1029	1
1030	1
1031	1
1039	1
1043	1
1044	1
1046	1
1051	1
1053	1
1058	1
1060	1
1065	1
1067	1
1070	1
1071	1
1074	1
1081	1
1083	1
1085	1
1092	1
1096	2
1099	1
1103	1
1111	1
1120	1
1122	1
1124	1
1130	1
1133	1
1134	1
1135	1
1136	1
1137	1
1139	1
1143	1
1151	1
1155	2
1158	1
1163	1
1172	1
1174	1
1183	1
1187	1
1192	1
1193	1
1213	1
1217	1
1224	1
1231	1
1236	1
1240	1
1247	1
1248	1
1250	1
1264	1
1266	1
1280	1
1281	1
1287	1
1288	1
1291	1
1294	1
1331	1
1336	1
1339	1
1345	1
1348	1
1358	1
1380	1
1385	1
1397	1
1407	1
1413	1
1416	1
1434	1
1442	1
1462	1
1469	1
1490	1
1496	1
1534	1
1542	1
1543	2
1550	1
1560	1
1581	1
1583	1
1596	1
1597	1
1647	1
1655	1
1676	1
1678	1
1683	1
1691	1
1707	1
1743	1
1758	1
1842	1
1900	1
1944	1
1978	1
2007	1
2012	1
2138	1
2184	1
2207	1
2246	1
2263	1
2265	1
2339	1
2342	1
2464	1
2475	1
2478	1
2498	1
2587	1
2623	1
2653	1
2656	1
2659	1
2779	1
2782	1
2887	1
2940	1
3098	1
3099	1
3140	1
3642	1
3932	1
4259	1
4513	1
4989	1
8568	1
19476	1
486692	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
....._....._........._.._...__._.......__.....__......_......._.........
_._...._......_..._..............._..........__..
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]