File Info
- Filename
- FFPE_V4_0001_RNA_0005_23KMKGLT4_18.FusionInspector.fusions.abridged.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0004/B23KMKGLT4/nfcore_rnafusion__2cae617--20260515-145204/fusioninspector/FFPE_V4_0001_RNA_0005_23KMKGLT4_18.FusionInspector.fusions.abridged.tsv
- Size
- 5.9 KB
- Workflow Run
- dev_rna_exp0004_2cae617
- Published
- May 16, 2026 6:01 AM
Content
View in new tab| #FusionName | JunctionReadCount | SpanningFragCount | est_J | est_S | LeftGene | LeftLocalBreakpoint | LeftBreakpoint | RightGene | RightLocalBreakpoint | RightBreakpoint | SpliceType | LargeAnchorSupport | NumCounterFusionLeft | NumCounterFusionRight | FAR_left | FAR_right | LeftBreakDinuc | LeftBreakEntropy | RightBreakDinuc | RightBreakEntropy | FFPM | microh_brkpt_dist | num_microh_near_brkpt |
| FGFR3--TACC3 | 3431 | 4 | 3431.00 | 4.00 | FGFR3^ENSG00000068078.20 | 9878 | chr4:1806934:+ | TACC3^ENSG00000013810.20 | 27590 | chr4:1739702:+ | ONLY_REF_SPLICE | YES | 44 | 1770 | 76.36 | 1.94 | GT | 1.8892 | AG | 1.7819 | 11.655 | 627 | 0 |
| FGFR3--TACC3 | 5 | 2 | 5.00 | 0.00 | FGFR3^ENSG00000068078.20 | 9874 | chr4:1806930:+ | TACC3^ENSG00000013810.20 | 27587 | chr4:1739699:+ | INCL_NON_REF_SPLICE | YES | 91 | 1737 | 0.09 | 0.00 | CG | 1.9219 | AG | 1.7819 | 0.017 | 632 | 0 |
| TMPRSS2--ERG | 2963 | 0 | 2963.00 | 0.00 | TMPRSS2^ENSG00000184012.14 | 4652 | chr21:41508081:- | ERG^ENSG00000157554.19 | 28751 | chr21:38584945:- | ONLY_REF_SPLICE | YES | 3 | 33 | 741.00 | 87.18 | GT | 1.6895 | AG | 1.9219 | 10.0535 | 1104 | 0 |
| TPM3--NTRK1 | 1047 | 5 | 1047.00 | 4.99 | TPM3^ENSG00000143549.21 | 13389 | chr1:154170400:- | NTRK1^ENSG00000198400.13 | 42070 | chr1:156874571:+ | ONLY_REF_SPLICE | YES | 5333 | 12 | 0.20 | 81.00 | GT | 1.9329 | AG | 1.6895 | 3.5694 | 355 | 0 |
| TPM3--NTRK1 | 3 | 5 | 3.00 | 0.01 | TPM3^ENSG00000143549.21 | 13389 | chr1:154170400:- | NTRK1^ENSG00000198400.13 | 42079 | chr1:156874580:+ | INCL_NON_REF_SPLICE | YES | 5333 | 27 | 0.00 | 0.32 | GT | 1.9329 | CA | 1.9329 | 0.0102 | 364 | 0 |
| ETV6--NTRK3 | 963 | 2 | 963.00 | 2.00 | ETV6^ENSG00000139083.11 | 11237 | chr12:11869969:+ | NTRK3^ENSG00000140538.16 | 46238 | chr15:87940753:- | ONLY_REF_SPLICE | YES | 1731 | 10 | 0.56 | 87.82 | GT | 1.7819 | AG | 1.9656 | 3.2743 | 1252 | 0 |
| FGFR3--BAIAP2L1 | 923 | 1 | 923.00 | 1.00 | FGFR3^ENSG00000068078.20 | 9878 | chr4:1806934:+ | BAIAP2L1^ENSG00000006453.14 | 16927 | chr7:98362432:- | ONLY_REF_SPLICE | YES | 44 | 30 | 20.56 | 29.84 | GT | 1.8892 | AG | 1.8062 | 3.1352 | 1171 | 0 |
| FGFR3--BAIAP2L1 | 4 | 1 | 4.00 | 0.00 | FGFR3^ENSG00000068078.20 | 9878 | chr4:1806934:+ | BAIAP2L1^ENSG00000006453.14 | 16962 | chr7:98362397:- | INCL_NON_REF_SPLICE | YES | 44 | 49 | 0.13 | 0.12 | GT | 1.8892 | AA | 1.9086 | 0.0136 | 1137 | 0 |
| LMNA--NTRK1 | 889 | 12 | 889.00 | 12.00 | LMNA^ENSG00000160789.23 | 17733 | chr1:156130773:+ | NTRK1^ENSG00000198400.13 | 40289 | chr1:156874906:+ | ONLY_REF_SPLICE | YES | 2589 | 172 | 0.35 | 5.21 | GT | 1.7465 | AG | 1.5058 | 3.0571 | 947 | 0 |
| NCOA4--RET | 828 | 0 | 828.00 | 0.00 | NCOA4^ENSG00000266412.6 | 9075 | chr10:46012883:- | RET^ENSG00000165731.20 | 30127 | chr10:43116584:+ | ONLY_REF_SPLICE | YES | 1722 | 216 | 0.48 | 3.82 | GT | 1.9086 | AG | 1.8323 | 2.8094 | 5144 | 0 |
| CCDC6--RET | 658 | 1 | 658.00 | 0.99 | CCDC6^ENSG00000108091.11 | 1435 | chr10:59906122:- | RET^ENSG00000165731.20 | 31587 | chr10:43116584:+ | ONLY_REF_SPLICE | YES | 1352 | 216 | 0.49 | 3.04 | GT | 1.8892 | AG | 1.8323 | 2.236 | 2092 | 0 |
| CCDC6--RET | 7 | 1 | 7.00 | 0.01 | CCDC6^ENSG00000108091.11 | 1441 | chr10:59906116:- | RET^ENSG00000165731.20 | 31594 | chr10:43116591:+ | INCL_NON_REF_SPLICE | YES | 1340 | 246 | 0.01 | 0.04 | GC | 1.9656 | TC | 1.9656 | 0.0238 | 2099 | 0 |
| KIF5B--RET | 626 | 5 | 626.00 | 5.00 | KIF5B^ENSG00000170759.11 | 19977 | chr10:32017143:- | RET^ENSG00000165731.20 | 38832 | chr10:43114480:+ | ONLY_REF_SPLICE | YES | 1027 | 12 | 0.61 | 48.62 | GT | 1.9656 | AG | 1.9656 | 2.141 | 3178 | 0 |
| EML4--ALK | 598 | 0 | 598.00 | 0.00 | EML4^ENSG00000143924.19 | 17400 | chr2:42295516:+ | ALK^ENSG00000171094.18 | 59003 | chr2:29223528:- | ONLY_REF_SPLICE | YES | 464 | 10 | 1.29 | 54.45 | GT | 1.6895 | AG | 1.9086 | 2.029 | 1550 | 0 |
| SLC34A2--ROS1 | 483 | 5 | 483.00 | 4.93 | SLC34A2^ENSG00000157765.13 | 6084 | chr4:25664330:+ | ROS1^ENSG00000047936.11 | 58025 | chr6:117324415:- | ONLY_REF_SPLICE | YES | 0 | 25 | 489.00 | 18.81 | GT | 1.8892 | AG | 1.7465 | 1.6555 | 999 | 0 |
| SLC34A2--ROS1 | 7 | 5 | 7.00 | 0.07 | SLC34A2^ENSG00000157765.13 | 6088 | chr4:25664334:+ | ROS1^ENSG00000047936.11 | 58027 | chr6:117324413:- | INCL_NON_REF_SPLICE | YES | 0 | 33 | 13.00 | 0.38 | GA | 1.7465 | AT | 1.8892 | 0.024 | 1001 | 0 |
| CD74--ROS1 | 469 | 2 | 469.00 | 1.97 | CD74^ENSG00000019582.16 | 4990 | chr5:150404680:- | ROS1^ENSG00000047936.11 | 48731 | chr6:117324415:- | ONLY_REF_SPLICE | YES | 17151 | 25 | 0.03 | 18.15 | GT | 1.7819 | AG | 1.7465 | 1.598 | 2407 | 0 |
| CD74--ROS1 | 6 | 2 | 6.00 | 0.03 | CD74^ENSG00000019582.16 | 4987 | chr5:150404683:- | ROS1^ENSG00000047936.11 | 48729 | chr6:117324417:- | INCL_NON_REF_SPLICE | NO | 18441 | 0 | 0.00 | 9.00 | AA | 1.8295 | TT | 1.5301 | 0.0205 | 2405 | 0 |
| TFG--NTRK1 | 355 | 3 | 355.00 | 3.00 | TFG^ENSG00000114354.15 | 9135 | chr3:100732672:+ | NTRK1^ENSG00000198400.13 | 37655 | chr1:156874571:+ | ONLY_REF_SPLICE | YES | 1575 | 12 | 0.23 | 27.62 | GT | 1.9329 | AG | 1.6895 | 1.2147 | 883 | 0 |
| PAX8--PPARG | 347 | 1 | 347.00 | 1.00 | PAX8^ENSG00000125618.18 | 9714 | chr2:113235394:- | PPARG^ENSG00000132170.23 | 31404 | chr3:12379704:+ | ONLY_REF_SPLICE | YES | 49 | 9 | 6.98 | 34.90 | GT | 1.8295 | AG | 1.9329 | 1.1808 | 1923 | 0 |
| PAX8--PPARG | 5 | 0 | 5.00 | 0.00 | PAX8^ENSG00000125618.18 | 9714 | chr2:113235394:- | PPARG^ENSG00000132170.23 | 31480 | chr3:12379780:+ | INCL_NON_REF_SPLICE | YES | 49 | 26 | 0.12 | 0.22 | GT | 1.8295 | AT | 1.7819 | 0.017 | 1923 | 0 |
| EGFR--SEPTIN14 | 326 | 3 | 326.00 | 3.00 | EGFR^ENSG00000146648.19 | 30734 | chr7:55200413:+ | SEPTIN14^ENSG00000154997.9 | 54769 | chr7:55796092:- | ONLY_REF_SPLICE | YES | 3 | 27 | 82.50 | 11.79 | GT | 1.8892 | AG | 1.9899 | 1.1163 | 658 | 0 |
| SLC45A3--BRAF | 299 | 0 | 299.00 | 0.00 | SLC45A3^ENSG00000158715.6 | 1116 | chr1:205680394:- | BRAF^ENSG00000157764.14 | 25172 | chr7:140794467:- | ONLY_REF_SPLICE | YES | 1 | 922 | 150.00 | 0.33 | GT | 1.5628 | AG | 1.7465 | 1.0145 | 2599 | 0 |
| STX16--NPEPL1 | 195 | 1 | 195.00 | 0.94 | STX16^ENSG00000124222.22 | 8855 | chr20:58673711:+ | NPEPL1^ENSG00000215440.12 | 17277 | chr20:58691724:+ | ONLY_REF_SPLICE | YES | 934 | 127 | 0.21 | 1.54 | GT | 1.7968 | AG | 1.8256 | 0.6648 | 1940 | 0 |
| STX16--NPEPL1 | 12 | 1 | 12.00 | 0.06 | STX16^ENSG00000124222.22 | 7774 | chr20:58671297:+ | NPEPL1^ENSG00000215440.12 | 17277 | chr20:58691724:+ | ONLY_REF_SPLICE | YES | 880 | 127 | 0.02 | 0.11 | GT | 1.8062 | AG | 1.8256 | 0.0409 | 2729 | 0 |
| STX16--NPEPL1 | 4 | 0 | 4.00 | 0.00 | STX16^ENSG00000124222.22 | 1835 | chr20:58652087:+ | NPEPL1^ENSG00000215440.12 | 17277 | chr20:58691724:+ | ONLY_REF_SPLICE | YES | 1526 | 127 | 0.00 | 0.04 | GT | 1.9899 | AG | 1.8256 | 0.0136 | 1258 | 0 |
| STX16--NPEPL1 | 2 | 0 | 2.00 | 0.00 | STX16^ENSG00000124222.22 | 8855 | chr20:58673711:+ | NPEPL1^ENSG00000215440.12 | 19290 | chr20:58693737:+ | ONLY_REF_SPLICE | YES | 934 | 854 | 0.00 | 0.00 | GT | 1.7968 | AG | 1.7819 | 0.0068 | 1248 | 0 |
| STX16--NPEPL1 | 1 | 0 | 1.00 | 0.00 | STX16^ENSG00000124222.22 | 1886 | chr20:58652138:+ | NPEPL1^ENSG00000215440.12 | 17277 | chr20:58691724:+ | ONLY_REF_SPLICE | YES | 1626 | 127 | 0.00 | 0.02 | GT | 1.9329 | AG | 1.8256 | 0.0034 | 1285 | 0 |
| TLK2--FAM157A | 58 | 0 | 58.00 | 0.00 | TLK2^ENSG00000146872.18 | 17137 | chr17:62560126:+ | FAM157A^ENSG00000236438.7 | 45187 | chr3:198180755:+ | ONLY_REF_SPLICE | YES | 488 | 46 | 0.12 | 1.26 | GT | 1.8892 | AG | 1.8892 | 0.1968 | 2733 | 0 |
30 rows