#FusionName	JunctionReadCount	SpanningFragCount	est_J	est_S	LeftGene	LeftLocalBreakpoint	LeftBreakpoint	RightGene	RightLocalBreakpoint	RightBreakpoint	SpliceType	LargeAnchorSupport	NumCounterFusionLeft	NumCounterFusionRight	FAR_left	FAR_right	LeftBreakDinuc	LeftBreakEntropy	RightBreakDinuc	RightBreakEntropy	FFPM	microh_brkpt_dist	num_microh_near_brkpt
FGFR3--TACC3	5162	6	5162.00	5.98	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	TACC3^ENSG00000013810.20	27590	chr4:1739702:+	ONLY_REF_SPLICE	YES	68	1879	74.91	2.75	GT	1.8892	AG	1.7819	17.5149	627	0
FGFR3--TACC3	7	6	7.00	0.01	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	TACC3^ENSG00000013810.20	22063	chr4:1730798:+	INCL_NON_REF_SPLICE	NO	68	2023	0.20	0.01	GT	1.8892	AG	1.6895	0.0237	1411	0
FGFR3--TACC3	6	6	6.00	0.01	FGFR3^ENSG00000068078.20	9880	chr4:1806936:+	TACC3^ENSG00000013810.20	27593	chr4:1739705:+	INCL_NON_REF_SPLICE	YES	19	1902	0.65	0.01	GA	1.8892	TA	1.5219	0.0203	623	0
FGFR3--TACC3	3	6	3.00	0.00	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	TACC3^ENSG00000013810.20	27591	chr4:1739703:+	INCL_NON_REF_SPLICE	YES	68	1900	0.14	0.01	GT	1.8892	GG	1.7819	0.0102	626	0
FGFR3--TACC3	3	5	3.00	0.00	FGFR3^ENSG00000068078.20	9872	chr4:1806928:+	TACC3^ENSG00000013810.20	27587	chr4:1739699:+	INCL_NON_REF_SPLICE	YES	167	1830	0.05	0.00	AC	1.8892	AG	1.7819	0.0102	633	0
TMPRSS2--ERG	4058	0	4058.00	0.00	TMPRSS2^ENSG00000184012.14	4652	chr21:41508081:-	ERG^ENSG00000157554.19	28751	chr21:38584945:-	ONLY_REF_SPLICE	YES	1	58	2029.50	68.80	GT	1.6895	AG	1.9219	13.753	1104	0
TPM3--NTRK1	1566	3	1566.00	3.00	TPM3^ENSG00000143549.21	13389	chr1:154170400:-	NTRK1^ENSG00000198400.13	42070	chr1:156874571:+	ONLY_REF_SPLICE	YES	6145	20	0.26	74.76	GT	1.9329	AG	1.6895	5.3175	355	0
FGFR3--BAIAP2L1	1340	2	1340.00	2.00	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	BAIAP2L1^ENSG00000006453.14	16927	chr7:98362432:-	ONLY_REF_SPLICE	YES	69	45	19.19	29.20	GT	1.8892	AG	1.8062	4.5482	1171	0
LMNA--NTRK1	1284	5	1284.00	4.99	LMNA^ENSG00000160789.23	17733	chr1:156130773:+	NTRK1^ENSG00000198400.13	40289	chr1:156874906:+	ONLY_REF_SPLICE	YES	3768	257	0.34	5.00	GT	1.7465	AG	1.5058	4.3685	947	0
LMNA--NTRK1	3	4	3.00	0.01	LMNA^ENSG00000160789.23	17734	chr1:156130774:+	NTRK1^ENSG00000198400.13	40292	chr1:156874909:+	INCL_NON_REF_SPLICE	YES	3768	303	0.00	0.03	TG	1.7465	TC	1.4566	0.0102	949	0
ETV6--NTRK3	1228	7	1228.00	6.97	ETV6^ENSG00000139083.11	11237	chr12:11869969:+	NTRK3^ENSG00000140538.16	46238	chr15:87940753:-	ONLY_REF_SPLICE	YES	1975	11	0.63	103.00	GT	1.7819	AG	1.9656	4.1854	1252	0
ETV6--NTRK3	5	7	5.00	0.03	ETV6^ENSG00000139083.11	11235	chr12:11869967:+	NTRK3^ENSG00000140538.16	46238	chr15:87940753:-	INCL_NON_REF_SPLICE	NO	2037	11	0.01	1.08	AG	1.9086	AG	1.9656	0.017	1252	0
CCDC6--RET	1209	2	1209.00	2.00	CCDC6^ENSG00000108091.11	1435	chr10:59906122:-	RET^ENSG00000165731.20	31587	chr10:43116584:+	ONLY_REF_SPLICE	YES	1633	338	0.74	3.58	GT	1.8892	AG	1.8323	4.1042	2092	0
CCDC6--RET	3	2	3.00	0.00	CCDC6^ENSG00000108091.11	1441	chr10:59906116:-	RET^ENSG00000165731.20	31594	chr10:43116591:+	INCL_NON_REF_SPLICE	YES	1610	373	0.00	0.02	GC	1.9656	TC	1.9656	0.0102	2099	0
NCOA4--RET	1033	4	1033.00	4.00	NCOA4^ENSG00000266412.6	9075	chr10:46012883:-	RET^ENSG00000165731.20	30127	chr10:43116584:+	ONLY_REF_SPLICE	YES	2223	338	0.47	3.06	GT	1.9086	AG	1.8323	3.5145	5144	0
SLC34A2--ROS1	848	7	848.00	6.90	SLC34A2^ENSG00000157765.13	6084	chr4:25664330:+	ROS1^ENSG00000047936.11	58025	chr6:117324415:-	ONLY_REF_SPLICE	YES	6	35	122.29	23.78	GT	1.8892	AG	1.7465	2.8974	999	0
SLC34A2--ROS1	7	7	7.00	0.06	SLC34A2^ENSG00000157765.13	6088	chr4:25664334:+	ROS1^ENSG00000047936.11	58028	chr6:117324412:-	INCL_NON_REF_SPLICE	YES	6	51	2.14	0.29	GA	1.7465	TG	1.8892	0.0239	1002	0
SLC34A2--ROS1	6	6	6.00	0.04	SLC34A2^ENSG00000157765.13	6088	chr4:25664334:+	ROS1^ENSG00000047936.11	58030	chr6:117324410:-	INCL_NON_REF_SPLICE	YES	6	61	1.86	0.21	GA	1.7465	AT	1.9086	0.0204	1004	0
SLC34A2--ROS1	5	0	5.00	0.00	SLC34A2^ENSG00000157765.13	6007	chr4:25664253:+	ROS1^ENSG00000047936.11	60242	chr6:117320033:-	INCL_NON_REF_SPLICE	YES	388	1094	0.02	0.01	GA	1.5301	TA	1.8062	0.0169	1827	0
KIF5B--RET	828	7	828.00	7.00	KIF5B^ENSG00000170759.11	19977	chr10:32017143:-	RET^ENSG00000165731.20	38832	chr10:43114480:+	ONLY_REF_SPLICE	YES	1243	11	0.67	69.67	GT	1.9656	AG	1.9656	2.8299	3178	0
KIF5B--RET	4	0	4.00	0.00	KIF5B^ENSG00000170759.11	19884	chr10:32017236:-	RET^ENSG00000165731.20	38861	chr10:43114509:+	INCL_NON_REF_SPLICE	YES	1729	76	0.00	0.06	GT	1.8295	CG	1.9086	0.0136	3252	0
EML4--ALK	729	0	729.00	0.00	EML4^ENSG00000143924.19	17400	chr2:42295516:+	ALK^ENSG00000171094.18	59003	chr2:29223528:-	ONLY_REF_SPLICE	YES	527	37	1.38	19.21	GT	1.6895	AG	1.9086	2.4707	1550	0
CD74--ROS1	698	4	698.00	3.95	CD74^ENSG00000019582.16	4990	chr5:150404680:-	ROS1^ENSG00000047936.11	48731	chr6:117324415:-	ONLY_REF_SPLICE	YES	19644	36	0.04	19.00	GT	1.7819	AG	1.7465	2.379	2407	0
CD74--ROS1	3	4	3.00	0.02	CD74^ENSG00000019582.16	4992	chr5:150404678:-	ROS1^ENSG00000047936.11	48732	chr6:117324414:-	INCL_NON_REF_SPLICE	YES	19655	38	0.00	0.21	AC	1.9329	GA	1.8295	0.0103	2408	0
CD74--ROS1	3	4	3.00	0.02	CD74^ENSG00000019582.16	4987	chr5:150404683:-	ROS1^ENSG00000047936.11	48729	chr6:117324417:-	INCL_NON_REF_SPLICE	NO	21119	0	0.00	8.00	AA	1.8295	TT	1.5301	0.0103	2405	0
CD74--ROS1	4	0	4.00	0.00	CD74^ENSG00000019582.16	4565	chr5:150405105:-	ROS1^ENSG00000047936.11	51041	chr6:117319940:-	INCL_NON_REF_SPLICE	YES	16752	1021	0.00	0.00	TG	1.6895	TT	1.5656	0.0136	753	0
CD74--ROS1	3	3	3.00	0.01	CD74^ENSG00000019582.16	4992	chr5:150404678:-	ROS1^ENSG00000047936.11	48734	chr6:117324412:-	INCL_NON_REF_SPLICE	YES	19655	52	0.00	0.13	AC	1.9329	TG	1.8892	0.0102	2407	0
TFG--NTRK1	523	0	523.00	0.00	TFG^ENSG00000114354.15	9135	chr3:100732672:+	NTRK1^ENSG00000198400.13	37655	chr1:156874571:+	ONLY_REF_SPLICE	YES	1740	20	0.30	24.95	GT	1.9329	AG	1.6895	1.7725	883	0
SLC45A3--BRAF	411	0	411.00	0.00	SLC45A3^ENSG00000158715.6	1116	chr1:205680394:-	BRAF^ENSG00000157764.14	25172	chr7:140794467:-	ONLY_REF_SPLICE	YES	2	1165	137.33	0.35	GT	1.5628	AG	1.7465	1.3929	2599	0
EGFR--SEPTIN14	392	2	392.00	2.00	EGFR^ENSG00000146648.19	30734	chr7:55200413:+	SEPTIN14^ENSG00000154997.9	54769	chr7:55796092:-	ONLY_REF_SPLICE	YES	5	21	65.83	17.95	GT	1.8892	AG	1.9899	1.3353	658	0
PAX8--PPARG	390	0	390.00	0.00	PAX8^ENSG00000125618.18	9714	chr2:113235394:-	PPARG^ENSG00000132170.23	31404	chr3:12379704:+	ONLY_REF_SPLICE	YES	55	11	6.98	32.58	GT	1.8295	AG	1.9329	1.3218	1923	0
STX16--NPEPL1	164	5	164.00	4.98	STX16^ENSG00000124222.22	8855	chr20:58673711:+	NPEPL1^ENSG00000215440.12	17277	chr20:58691724:+	ONLY_REF_SPLICE	YES	984	140	0.17	1.21	GT	1.7968	AG	1.8256	0.5727	1940	0
STX16--NPEPL1	4	1	4.00	0.02	STX16^ENSG00000124222.22	7774	chr20:58671297:+	NPEPL1^ENSG00000215440.12	17277	chr20:58691724:+	ONLY_REF_SPLICE	YES	1007	140	0.01	0.04	GT	1.8062	AG	1.8256	0.0137	2729	0
STX16--NPEPL1	1	0	1.00	0.00	STX16^ENSG00000124222.22	1886	chr20:58652138:+	NPEPL1^ENSG00000215440.12	17277	chr20:58691724:+	ONLY_REF_SPLICE	YES	1798	140	0.00	0.01	GT	1.9329	AG	1.8256	0.0034	1285	0
TLK2--FAM157A	69	1	69.00	1.00	TLK2^ENSG00000146872.18	17137	chr17:62560126:+	FAM157A^ENSG00000236438.7	45187	chr3:198180755:+	ONLY_REF_SPLICE	YES	465	47	0.15	1.48	GT	1.8892	AG	1.8892	0.2372	2733	0