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Filename
FFPE_V4_0001_RNA_0005_23KMKGLT4_34.FusionInspector.fusions.abridged.tsv
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0004/B23KMKGLT4/nfcore_rnafusion__2cae617--20260515-145204/fusioninspector/FFPE_V4_0001_RNA_0005_23KMKGLT4_34.FusionInspector.fusions.abridged.tsv
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5.0 KB
Workflow Run
dev_rna_exp0004_2cae617
Published
May 16, 2026 6:14 AM

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#FusionName JunctionReadCount SpanningFragCount est_J est_S LeftGene LeftLocalBreakpoint LeftBreakpoint RightGene RightLocalBreakpoint RightBreakpoint SpliceType LargeAnchorSupport NumCounterFusionLeft NumCounterFusionRight FAR_left FAR_right LeftBreakDinuc LeftBreakEntropy RightBreakDinuc RightBreakEntropy FFPM microh_brkpt_dist num_microh_near_brkpt
FGFR3--TACC3 3896 5 3896.00 4.98 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ TACC3^ENSG00000013810.20 27590 chr4:1739702:+ ONLY_REF_SPLICE YES 41 1460 92.90 2.67 GT 1.8892 AG 1.7819 13.2571 627 0
FGFR3--TACC3 12 5 12.00 0.02 FGFR3^ENSG00000068078.20 9882 chr4:1806938:+ TACC3^ENSG00000013810.20 27596 chr4:1739708:+ INCL_NON_REF_SPLICE YES 18 1530 0.95 0.01 GT 1.8892 AG 1.5058 0.0409 620 0
TMPRSS2--ERG 2443 0 2443.00 0.00 TMPRSS2^ENSG00000184012.14 4652 chr21:41508081:- ERG^ENSG00000157554.19 28751 chr21:38584945:- ONLY_REF_SPLICE YES 1 38 1222.00 62.67 GT 1.6895 AG 1.9219 8.3023 1104 0
TMPRSS2--ERG 11 0 11.00 0.00 TMPRSS2^ENSG00000184012.14 4646 chr21:41508087:- ERG^ENSG00000157554.19 28747 chr21:38584949:- INCL_NON_REF_SPLICE YES 11 0 1.00 12.00 CG 1.5628 AT 1.9656 0.0374 1100 0
FGFR3--BAIAP2L1 1039 1 1039.00 1.00 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ BAIAP2L1^ENSG00000006453.14 16927 chr7:98362432:- ONLY_REF_SPLICE YES 42 20 24.21 49.57 GT 1.8892 AG 1.8062 3.5344 1171 0
LMNA--NTRK1 1024 2 1024.00 1.96 LMNA^ENSG00000160789.23 17733 chr1:156130773:+ NTRK1^ENSG00000198400.13 40289 chr1:156874906:+ ONLY_REF_SPLICE YES 2341 181 0.44 5.64 GT 1.7465 AG 1.5058 3.4867 947 0
LMNA--NTRK1 12 2 12.00 0.02 LMNA^ENSG00000160789.23 17728 chr1:156130768:+ NTRK1^ENSG00000198400.13 40285 chr1:156874902:+ INCL_NON_REF_SPLICE NO 2402 116 0.01 0.13 CC 1.5546 CA 1.7819 0.0409 941 0
LMNA--NTRK1 8 2 8.00 0.02 LMNA^ENSG00000160789.23 17734 chr1:156130774:+ NTRK1^ENSG00000198400.13 40292 chr1:156874909:+ INCL_NON_REF_SPLICE YES 2341 202 0.00 0.05 TG 1.7465 TC 1.4566 0.0273 949 0
ETV6--NTRK3 869 0 869.00 0.00 ETV6^ENSG00000139083.11 11237 chr12:11869969:+ NTRK3^ENSG00000140538.16 46238 chr15:87940753:- ONLY_REF_SPLICE YES 1433 1 0.61 435.00 GT 1.7819 AG 1.9656 2.9532 1252 0
TPM3--NTRK1 858 0 858.00 0.00 TPM3^ENSG00000143549.21 13389 chr1:154170400:- NTRK1^ENSG00000198400.13 42070 chr1:156874571:+ ONLY_REF_SPLICE YES 4911 13 0.17 61.36 GT 1.9329 AG 1.6895 2.9158 355 0
NCOA4--RET 722 3 722.00 3.00 NCOA4^ENSG00000266412.6 9075 chr10:46012883:- RET^ENSG00000165731.20 30127 chr10:43116584:+ ONLY_REF_SPLICE YES 1530 158 0.47 4.57 GT 1.9086 AG 1.8323 2.4639 5144 0
EML4--ALK 646 0 646.00 0.00 EML4^ENSG00000143924.19 17400 chr2:42295516:+ ALK^ENSG00000171094.18 59003 chr2:29223528:- ONLY_REF_SPLICE YES 401 36 1.61 17.49 GT 1.6895 AG 1.9086 2.1954 1550 0
CD74--ROS1 573 1 573.00 0.99 CD74^ENSG00000019582.16 4990 chr5:150404680:- ROS1^ENSG00000047936.11 48731 chr6:117324415:- ONLY_REF_SPLICE YES 17062 30 0.03 18.55 GT 1.7819 AG 1.7465 1.9507 2407 0
CD74--ROS1 3 1 3.00 0.01 CD74^ENSG00000019582.16 4989 chr5:150404681:- ROS1^ENSG00000047936.11 48779 chr6:117324367:- INCL_NON_REF_SPLICE YES 18481 120 0.00 0.04 GG 1.7819 TG 1.7465 0.0102 2384 0
CCDC6--RET 540 3 540.00 3.00 CCDC6^ENSG00000108091.11 1435 chr10:59906122:- RET^ENSG00000165731.20 31587 chr10:43116584:+ ONLY_REF_SPLICE YES 1146 158 0.47 3.42 GT 1.8892 AG 1.8323 1.8453 2092 0
SLC34A2--ROS1 498 4 498.00 4.00 SLC34A2^ENSG00000157765.13 6084 chr4:25664330:+ ROS1^ENSG00000047936.11 58025 chr6:117324415:- ONLY_REF_SPLICE YES 0 29 503.00 16.77 GT 1.8892 AG 1.7465 1.706 999 0
KIF5B--RET 489 3 489.00 3.00 KIF5B^ENSG00000170759.11 19977 chr10:32017143:- RET^ENSG00000165731.20 38832 chr10:43114480:+ ONLY_REF_SPLICE YES 850 7 0.58 61.62 GT 1.9656 AG 1.9656 1.672 3178 0
TFG--NTRK1 323 0 323.00 0.00 TFG^ENSG00000114354.15 9135 chr3:100732672:+ NTRK1^ENSG00000198400.13 37655 chr1:156874571:+ ONLY_REF_SPLICE YES 1178 13 0.27 23.14 GT 1.9329 AG 1.6895 1.0977 883 0
PAX8--PPARG 315 0 315.00 0.00 PAX8^ENSG00000125618.18 9714 chr2:113235394:- PPARG^ENSG00000132170.23 31404 chr3:12379704:+ ONLY_REF_SPLICE YES 46 6 6.72 45.14 GT 1.8295 AG 1.9329 1.0705 1923 0
SLC45A3--BRAF 265 0 265.00 0.00 SLC45A3^ENSG00000158715.6 1116 chr1:205680394:- BRAF^ENSG00000157764.14 25172 chr7:140794467:- ONLY_REF_SPLICE YES 0 829 266.00 0.32 GT 1.5628 AG 1.7465 0.9006 2599 0
EGFR--SEPTIN14 223 5 223.00 5.00 EGFR^ENSG00000146648.19 30734 chr7:55200413:+ SEPTIN14^ENSG00000154997.9 54769 chr7:55796092:- ONLY_REF_SPLICE YES 5 25 38.17 8.81 GT 1.8892 AG 1.9899 0.7748 658 0
STX16--NPEPL1 166 3 166.00 3.00 STX16^ENSG00000124222.22 8855 chr20:58673711:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 824 139 0.21 1.21 GT 1.7968 AG 1.8256 0.5743 1940 0
STX16--NPEPL1 8 0 8.00 0.00 STX16^ENSG00000124222.22 7774 chr20:58671297:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 917 139 0.01 0.06 GT 1.8062 AG 1.8256 0.0272 2729 0
TLK2--AC240565.1 69 0 69.00 0.00 TLK2^ENSG00000146872.18 17137 chr17:62560126:+ AC240565.1^ENSG00000280136.2 41242 chr17:106864:- ONLY_REF_SPLICE YES 391 27 0.18 2.50 GT 1.8892 AG 1.8892 0.2345 1734 0
25 rows