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Filename
FFPE_V4_0001_RNA_0005_23KMKGLT4_1.FusionInspector.fusions.abridged.tsv
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0004/B23KMKGLT4/nfcore_rnafusion__2cae617--20260515-145204/fusioninspector/FFPE_V4_0001_RNA_0005_23KMKGLT4_1.FusionInspector.fusions.abridged.tsv
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4.8 KB
Workflow Run
dev_rna_exp0004_2cae617
Published
May 16, 2026 6:16 AM

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#FusionName JunctionReadCount SpanningFragCount est_J est_S LeftGene LeftLocalBreakpoint LeftBreakpoint RightGene RightLocalBreakpoint RightBreakpoint SpliceType LargeAnchorSupport NumCounterFusionLeft NumCounterFusionRight FAR_left FAR_right LeftBreakDinuc LeftBreakEntropy RightBreakDinuc RightBreakEntropy FFPM microh_brkpt_dist num_microh_near_brkpt
FGFR3--TACC3 8293 5 8293.00 4.98 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ TACC3^ENSG00000013810.20 27590 chr4:1739702:+ ONLY_REF_SPLICE YES 207 3230 39.90 2.57 GT 1.8892 AG 1.7819 28.0551 627 0
FGFR3--TACC3 22 5 22.00 0.01 FGFR3^ENSG00000068078.20 9880 chr4:1806936:+ TACC3^ENSG00000013810.20 27593 chr4:1739705:+ INCL_NON_REF_SPLICE YES 17 3419 1.56 0.01 GA 1.8892 TA 1.5219 0.0744 623 0
FGFR3--TACC3 12 5 12.00 0.01 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ TACC3^ENSG00000013810.20 22063 chr4:1730798:+ INCL_NON_REF_SPLICE NO 207 2546 0.09 0.01 GT 1.8892 AG 1.6895 0.0406 1411 0
FGFR3--TACC3 7 0 7.00 0.00 FGFR3^ENSG00000068078.20 9555 chr4:1806611:+ TACC3^ENSG00000013810.20 27632 chr4:1739744:+ INCL_NON_REF_SPLICE YES 2063 4257 0.00 0.00 TG 1.7232 GG 1.9656 0.0237 493 0
TMPRSS2--ERG 4719 0 4719.00 0.00 TMPRSS2^ENSG00000184012.14 4652 chr21:41508081:- ERG^ENSG00000157554.19 28751 chr21:38584945:- ONLY_REF_SPLICE YES 59 134 78.67 34.96 GT 1.6895 AG 1.9219 15.9547 1104 0
LMNA--NTRK1 2734 4 2734.00 4.00 LMNA^ENSG00000160789.23 17733 chr1:156130773:+ NTRK1^ENSG00000198400.13 40289 chr1:156874906:+ ONLY_REF_SPLICE YES 3983 393 0.69 6.95 GT 1.7465 AG 1.5058 9.257 947 0
FGFR3--BAIAP2L1 2041 0 2041.00 0.00 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ BAIAP2L1^ENSG00000006453.14 16927 chr7:98362432:- ONLY_REF_SPLICE YES 219 58 9.28 34.61 GT 1.8892 AG 1.8062 6.9005 1171 0
ETV6--NTRK3 1473 2 1473.00 2.00 ETV6^ENSG00000139083.11 11237 chr12:11869969:+ NTRK3^ENSG00000140538.16 46238 chr15:87940753:- ONLY_REF_SPLICE YES 1866 8 0.79 164.00 GT 1.7819 AG 1.9656 4.9869 1252 0
TPM3--NTRK1 1371 2 1371.00 2.00 TPM3^ENSG00000143549.21 13389 chr1:154170400:- NTRK1^ENSG00000198400.13 42070 chr1:156874571:+ ONLY_REF_SPLICE YES 5626 33 0.24 40.41 GT 1.9329 AG 1.6895 4.6421 355 0
NCOA4--RET 1370 0 1370.00 0.00 NCOA4^ENSG00000266412.6 9075 chr10:46012883:- RET^ENSG00000165731.20 30127 chr10:43116584:+ ONLY_REF_SPLICE YES 1799 419 0.76 3.26 GT 1.9086 AG 1.8323 4.6319 5144 0
NCOA4--RET 6 0 6.00 0.00 NCOA4^ENSG00000266412.6 7500 chr10:46014458:- RET^ENSG00000165731.20 30123 chr10:43116580:+ INCL_NON_REF_SPLICE YES 1241 401 0.01 0.02 CT 1.9656 AC 1.7968 0.0203 5486 0
CCDC6--RET 1323 4 1323.00 4.00 CCDC6^ENSG00000108091.11 1435 chr10:59906122:- RET^ENSG00000165731.20 31587 chr10:43116584:+ ONLY_REF_SPLICE YES 1688 419 0.79 3.16 GT 1.8892 AG 1.8323 4.4865 2092 0
SLC45A3--BRAF 674 0 674.00 0.00 SLC45A3^ENSG00000158715.6 1116 chr1:205680394:- BRAF^ENSG00000157764.14 25172 chr7:140794467:- ONLY_REF_SPLICE YES 1 811 337.50 0.83 GT 1.5628 AG 1.7465 2.2788 2599 0
KIF5B--RET 663 2 663.00 2.00 KIF5B^ENSG00000170759.11 19977 chr10:32017143:- RET^ENSG00000165731.20 38832 chr10:43114480:+ ONLY_REF_SPLICE YES 872 16 0.76 39.18 GT 1.9656 AG 1.9656 2.2484 3178 0
PAX8--PPARG 625 0 625.00 0.00 PAX8^ENSG00000125618.18 9714 chr2:113235394:- PPARG^ENSG00000132170.23 31404 chr3:12379704:+ ONLY_REF_SPLICE YES 89 15 6.96 39.12 GT 1.8295 AG 1.9329 2.1131 1923 0
EML4--ALK 619 0 619.00 0.00 EML4^ENSG00000143924.19 17400 chr2:42295516:+ ALK^ENSG00000171094.18 59003 chr2:29223528:- ONLY_REF_SPLICE YES 225 70 2.74 8.73 GT 1.6895 AG 1.9086 2.0928 1550 0
CD74--ROS1 564 1 564.00 0.98 CD74^ENSG00000019582.16 4990 chr5:150404680:- ROS1^ENSG00000047936.11 48731 chr6:117324415:- ONLY_REF_SPLICE YES 30724 10 0.02 51.45 GT 1.7819 AG 1.7465 1.9102 2407 0
CD74--ROS1 6 1 6.00 0.01 CD74^ENSG00000019582.16 4992 chr5:150404678:- ROS1^ENSG00000047936.11 48734 chr6:117324412:- INCL_NON_REF_SPLICE YES 30733 17 0.00 0.44 AC 1.9329 TG 1.8892 0.0203 2407 0
CD74--ROS1 6 1 6.00 0.01 CD74^ENSG00000019582.16 4990 chr5:150404680:- ROS1^ENSG00000047936.11 48729 chr6:117324417:- INCL_NON_REF_SPLICE YES 30724 0 0.00 8.00 GT 1.7819 TT 1.5301 0.0203 2408 0
SLC34A2--ROS1 353 2 353.00 2.00 SLC34A2^ENSG00000157765.13 6084 chr4:25664330:+ ROS1^ENSG00000047936.11 58025 chr6:117324415:- ONLY_REF_SPLICE YES 0 11 356.00 29.67 GT 1.8892 AG 1.7465 1.2003 999 0
SLC34A2--ROS1 6 0 6.00 0.00 SLC34A2^ENSG00000157765.13 6088 chr4:25664334:+ ROS1^ENSG00000047936.11 58030 chr6:117324410:- INCL_NON_REF_SPLICE YES 0 25 7.00 0.27 GA 1.7465 AT 1.9086 0.0203 1004 0
EGFR--SEPTIN14 343 1 343.00 1.00 EGFR^ENSG00000146648.19 30734 chr7:55200413:+ SEPTIN14^ENSG00000154997.9 54769 chr7:55796092:- ONLY_REF_SPLICE YES 11 16 28.75 20.29 GT 1.8892 AG 1.9899 1.1631 658 0
TFG--NTRK1 252 1 252.00 1.00 TFG^ENSG00000114354.15 9135 chr3:100732672:+ NTRK1^ENSG00000198400.13 37655 chr1:156874571:+ ONLY_REF_SPLICE YES 678 33 0.37 7.47 GT 1.9329 AG 1.6895 0.8554 883 0
24 rows