#FusionName	JunctionReadCount	SpanningFragCount	est_J	est_S	LeftGene	LeftLocalBreakpoint	LeftBreakpoint	RightGene	RightLocalBreakpoint	RightBreakpoint	SpliceType	LargeAnchorSupport	NumCounterFusionLeft	NumCounterFusionRight	FAR_left	FAR_right	LeftBreakDinuc	LeftBreakEntropy	RightBreakDinuc	RightBreakEntropy	FFPM	microh_brkpt_dist	num_microh_near_brkpt
FGFR3--TACC3	5613	8	5613.00	7.98	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	TACC3^ENSG00000013810.20	27590	chr4:1739702:+	ONLY_REF_SPLICE	YES	87	2982	63.89	1.88	GT	1.8892	AG	1.7819	19.0513	627	0
FGFR3--TACC3	12	0	12.00	0.00	FGFR3^ENSG00000068078.20	9603	chr4:1806659:+	TACC3^ENSG00000013810.20	27862	chr4:1739974:+	INCL_NON_REF_SPLICE	YES	2015	3198	0.01	0.00	GC	1.7819	AG	1.7819	0.0407	630	0
FGFR3--TACC3	8	8	8.00	0.01	FGFR3^ENSG00000068078.20	9880	chr4:1806936:+	TACC3^ENSG00000013810.20	27593	chr4:1739705:+	INCL_NON_REF_SPLICE	YES	33	3070	0.50	0.01	GA	1.8892	TA	1.5219	0.0271	623	0
FGFR3--TACC3	7	8	7.00	0.01	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	TACC3^ENSG00000013810.20	22063	chr4:1730798:+	INCL_NON_REF_SPLICE	NO	87	2986	0.18	0.01	GT	1.8892	AG	1.6895	0.0237	1411	0
TMPRSS2--ERG	4642	0	4642.00	0.00	TMPRSS2^ENSG00000184012.14	4652	chr21:41508081:-	ERG^ENSG00000157554.19	28751	chr21:38584945:-	ONLY_REF_SPLICE	YES	12	106	357.15	43.39	GT	1.6895	AG	1.9219	15.7332	1104	0
TMPRSS2--ERG	4	0	4.00	0.00	TMPRSS2^ENSG00000184012.14	4654	chr21:41508079:-	ERG^ENSG00000157554.19	28752	chr21:38584944:-	INCL_NON_REF_SPLICE	YES	0	116	5.00	0.04	GA	1.7232	GG	1.8295	0.0136	1105	0
ETV6--NTRK3	1680	8	1680.00	8.00	ETV6^ENSG00000139083.11	11237	chr12:11869969:+	NTRK3^ENSG00000140538.16	46238	chr15:87940753:-	ONLY_REF_SPLICE	YES	2980	22	0.57	73.43	GT	1.7819	AG	1.9656	5.7212	1252	0
FGFR3--BAIAP2L1	1668	5	1668.00	5.00	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	BAIAP2L1^ENSG00000006453.14	16927	chr7:98362432:-	ONLY_REF_SPLICE	YES	88	60	18.81	27.44	GT	1.8892	AG	1.8062	5.6703	1171	0
LMNA--NTRK1	1632	10	1632.00	9.99	LMNA^ENSG00000160789.23	17733	chr1:156130773:+	NTRK1^ENSG00000198400.13	40289	chr1:156874906:+	ONLY_REF_SPLICE	YES	4787	408	0.34	4.02	GT	1.7465	AG	1.5058	5.5653	947	0
LMNA--NTRK1	3	8	3.00	0.01	LMNA^ENSG00000160789.23	17734	chr1:156130774:+	NTRK1^ENSG00000198400.13	40292	chr1:156874909:+	INCL_NON_REF_SPLICE	YES	4787	467	0.00	0.03	TG	1.7465	TC	1.4566	0.0102	949	0
TPM3--NTRK1	1480	4	1480.00	4.00	TPM3^ENSG00000143549.21	13389	chr1:154170400:-	NTRK1^ENSG00000198400.13	42070	chr1:156874571:+	ONLY_REF_SPLICE	YES	7881	38	0.19	38.08	GT	1.9329	AG	1.6895	5.0298	355	0
NCOA4--RET	1412	6	1412.00	6.00	NCOA4^ENSG00000266412.6	9075	chr10:46012883:-	RET^ENSG00000165731.20	30127	chr10:43116584:+	ONLY_REF_SPLICE	YES	3125	578	0.45	2.45	GT	1.9086	AG	1.8323	4.806	5144	0
CCDC6--RET	1251	5	1251.00	5.00	CCDC6^ENSG00000108091.11	1435	chr10:59906122:-	RET^ENSG00000165731.20	31587	chr10:43116584:+	ONLY_REF_SPLICE	YES	2288	578	0.55	2.17	GT	1.8892	AG	1.8323	4.2569	2092	0
KIF5B--RET	1063	10	1063.00	10.00	KIF5B^ENSG00000170759.11	19977	chr10:32017143:-	RET^ENSG00000165731.20	38832	chr10:43114480:+	ONLY_REF_SPLICE	YES	1770	21	0.61	48.82	GT	1.9656	AG	1.9656	3.6367	3178	0
SLC34A2--ROS1	866	21	866.00	20.77	SLC34A2^ENSG00000157765.13	6084	chr4:25664330:+	ROS1^ENSG00000047936.11	58025	chr6:117324415:-	ONLY_REF_SPLICE	YES	0	48	888.00	18.12	GT	1.8892	AG	1.7465	3.0056	999	0
SLC34A2--ROS1	7	15	7.00	0.12	SLC34A2^ENSG00000157765.13	6088	chr4:25664334:+	ROS1^ENSG00000047936.11	58028	chr6:117324412:-	INCL_NON_REF_SPLICE	YES	0	88	23.00	0.26	GA	1.7465	TG	1.8892	0.0241	1002	0
SLC34A2--ROS1	3	21	3.00	0.07	SLC34A2^ENSG00000157765.13	6088	chr4:25664334:+	ROS1^ENSG00000047936.11	58027	chr6:117324413:-	INCL_NON_REF_SPLICE	YES	0	71	25.00	0.35	GA	1.7465	AT	1.8892	0.0104	1001	0
SLC34A2--ROS1	3	12	3.00	0.04	SLC34A2^ENSG00000157765.13	6088	chr4:25664334:+	ROS1^ENSG00000047936.11	58031	chr6:117324409:-	INCL_NON_REF_SPLICE	YES	0	116	16.00	0.14	GA	1.7465	TT	1.8892	0.0103	1005	0
SLC34A2--ROS1	4	0	4.00	0.00	SLC34A2^ENSG00000157765.13	4724	chr4:25662611:+	ROS1^ENSG00000047936.11	58054	chr6:117324386:-	INCL_NON_REF_SPLICE	YES	520	213	0.01	0.02	AG	1.2419	TC	1.4295	0.0136	1699	0
EML4--ALK	818	0	818.00	0.00	EML4^ENSG00000143924.19	17400	chr2:42295516:+	ALK^ENSG00000171094.18	59003	chr2:29223528:-	ONLY_REF_SPLICE	YES	745	71	1.10	11.38	GT	1.6895	AG	1.9086	2.7725	1550	0
CD74--ROS1	786	3	786.00	2.95	CD74^ENSG00000019582.16	4990	chr5:150404680:-	ROS1^ENSG00000047936.11	48731	chr6:117324415:-	ONLY_REF_SPLICE	YES	23161	49	0.03	15.80	GT	1.7819	AG	1.7465	2.674	2407	0
CD74--ROS1	6	3	6.00	0.02	CD74^ENSG00000019582.16	4992	chr5:150404678:-	ROS1^ENSG00000047936.11	48732	chr6:117324414:-	INCL_NON_REF_SPLICE	YES	23162	55	0.00	0.18	AC	1.9329	GA	1.8295	0.0204	2408	0
CD74--ROS1	6	3	6.00	0.02	CD74^ENSG00000019582.16	4989	chr5:150404681:-	ROS1^ENSG00000047936.11	12651	chr6:117425921:-	INCL_NON_REF_SPLICE	NO	25084	0	0.00	10.00	GG	1.7819	TT	1.9656	0.0204	3299	0
CD74--ROS1	3	2	3.00	0.01	CD74^ENSG00000019582.16	4992	chr5:150404678:-	ROS1^ENSG00000047936.11	48734	chr6:117324412:-	INCL_NON_REF_SPLICE	NO	23162	89	0.00	0.07	AC	1.9329	TG	1.8892	0.0102	2407	0
TFG--NTRK1	608	1	608.00	1.00	TFG^ENSG00000114354.15	9135	chr3:100732672:+	NTRK1^ENSG00000198400.13	37655	chr1:156874571:+	ONLY_REF_SPLICE	YES	2393	37	0.25	16.05	GT	1.9329	AG	1.6895	2.0641	883	0
EGFR--SEPTIN14	505	4	505.00	4.00	EGFR^ENSG00000146648.19	30734	chr7:55200413:+	SEPTIN14^ENSG00000154997.9	54769	chr7:55796092:-	ONLY_REF_SPLICE	YES	18	21	26.84	23.18	GT	1.8892	AG	1.9899	1.7252	658	0
PAX8--PPARG	502	1	502.00	1.00	PAX8^ENSG00000125618.18	9714	chr2:113235394:-	PPARG^ENSG00000132170.23	31404	chr3:12379704:+	ONLY_REF_SPLICE	YES	82	17	6.07	28.00	GT	1.8295	AG	1.9329	1.7048	1923	0
SLC45A3--BRAF	488	0	488.00	0.00	SLC45A3^ENSG00000158715.6	1116	chr1:205680394:-	BRAF^ENSG00000157764.14	25172	chr7:140794467:-	ONLY_REF_SPLICE	YES	1	1576	244.50	0.31	GT	1.5628	AG	1.7465	1.654	2599	0
STX16--NPEPL1	159	0	159.00	0.00	STX16^ENSG00000124222.22	8855	chr20:58673711:+	NPEPL1^ENSG00000215440.12	17277	chr20:58691724:+	ONLY_REF_SPLICE	YES	1164	166	0.14	0.96	GT	1.7968	AG	1.8256	0.5389	1940	0
STX16--NPEPL1	3	0	3.00	0.00	STX16^ENSG00000124222.22	7774	chr20:58671297:+	NPEPL1^ENSG00000215440.12	17277	chr20:58691724:+	ONLY_REF_SPLICE	YES	1154	166	0.00	0.02	GT	1.8062	AG	1.8256	0.0102	2729	0
STX16--NPEPL1	2	0	2.00	0.00	STX16^ENSG00000124222.22	1835	chr20:58652087:+	NPEPL1^ENSG00000215440.12	17277	chr20:58691724:+	ONLY_REF_SPLICE	YES	2180	166	0.00	0.02	GT	1.9899	AG	1.8256	0.0068	1258	0