File Info
- Filename
- FFPE_V4_0001_RNA_0005_23KMKGLT4_26.FusionInspector.fusions.abridged.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0004/B23KMKGLT4/nfcore_rnafusion__2cae617--20260515-145204/fusioninspector/FFPE_V4_0001_RNA_0005_23KMKGLT4_26.FusionInspector.fusions.abridged.tsv
- Size
- 6.1 KB
- Workflow Run
- dev_rna_exp0004_2cae617
- Published
- May 16, 2026 6:45 AM
Content
View in new tab| #FusionName | JunctionReadCount | SpanningFragCount | est_J | est_S | LeftGene | LeftLocalBreakpoint | LeftBreakpoint | RightGene | RightLocalBreakpoint | RightBreakpoint | SpliceType | LargeAnchorSupport | NumCounterFusionLeft | NumCounterFusionRight | FAR_left | FAR_right | LeftBreakDinuc | LeftBreakEntropy | RightBreakDinuc | RightBreakEntropy | FFPM | microh_brkpt_dist | num_microh_near_brkpt |
| FGFR3--TACC3 | 3293 | 4 | 3293.00 | 3.99 | FGFR3^ENSG00000068078.20 | 9878 | chr4:1806934:+ | TACC3^ENSG00000013810.20 | 27590 | chr4:1739702:+ | ONLY_REF_SPLICE | YES | 29 | 1806 | 109.93 | 1.83 | GT | 1.8892 | AG | 1.7819 | 11.1916 | 627 | 0 |
| FGFR3--TACC3 | 5 | 4 | 5.00 | 0.01 | FGFR3^ENSG00000068078.20 | 9882 | chr4:1806938:+ | TACC3^ENSG00000013810.20 | 27596 | chr4:1739708:+ | INCL_NON_REF_SPLICE | YES | 8 | 1900 | 1.11 | 0.01 | GT | 1.8892 | AG | 1.5058 | 0.017 | 620 | 0 |
| TMPRSS2--ERG | 2417 | 0 | 2417.00 | 0.00 | TMPRSS2^ENSG00000184012.14 | 4652 | chr21:41508081:- | ERG^ENSG00000157554.19 | 28751 | chr21:38584945:- | ONLY_REF_SPLICE | YES | 1 | 31 | 1209.00 | 75.56 | GT | 1.6895 | AG | 1.9219 | 8.2045 | 1104 | 0 |
| TPM3--NTRK1 | 863 | 0 | 863.00 | 0.00 | TPM3^ENSG00000143549.21 | 13389 | chr1:154170400:- | NTRK1^ENSG00000198400.13 | 42070 | chr1:156874571:+ | ONLY_REF_SPLICE | YES | 5271 | 14 | 0.16 | 57.60 | GT | 1.9329 | AG | 1.6895 | 2.9295 | 355 | 0 |
| LMNA--NTRK1 | 845 | 4 | 845.00 | 4.00 | LMNA^ENSG00000160789.23 | 17733 | chr1:156130773:+ | NTRK1^ENSG00000198400.13 | 40289 | chr1:156874906:+ | ONLY_REF_SPLICE | YES | 2531 | 162 | 0.34 | 5.21 | GT | 1.7465 | AG | 1.5058 | 2.882 | 947 | 0 |
| ETV6--NTRK3 | 844 | 1 | 844.00 | 1.00 | ETV6^ENSG00000139083.11 | 11237 | chr12:11869969:+ | NTRK3^ENSG00000140538.16 | 46238 | chr15:87940753:- | ONLY_REF_SPLICE | YES | 1564 | 8 | 0.54 | 94.00 | GT | 1.7819 | AG | 1.9656 | 2.8684 | 1252 | 0 |
| FGFR3--BAIAP2L1 | 828 | 0 | 828.00 | 0.00 | FGFR3^ENSG00000068078.20 | 9878 | chr4:1806934:+ | BAIAP2L1^ENSG00000006453.14 | 16927 | chr7:98362432:- | ONLY_REF_SPLICE | YES | 30 | 26 | 26.74 | 30.70 | GT | 1.8892 | AG | 1.8062 | 2.8107 | 1171 | 0 |
| FGFR3--BAIAP2L1 | 4 | 0 | 4.00 | 0.00 | FGFR3^ENSG00000068078.20 | 9095 | chr4:1806151:+ | BAIAP2L1^ENSG00000006453.14 | 18323 | chr7:98355106:- | INCL_NON_REF_SPLICE | YES | 246 | 39 | 0.02 | 0.12 | CT | 1.8892 | GC | 1.9899 | 0.0136 | 541 | 0 |
| NCOA4--RET | 709 | 4 | 709.00 | 3.94 | NCOA4^ENSG00000266412.6 | 9075 | chr10:46012883:- | RET^ENSG00000165731.20 | 30127 | chr10:43116584:+ | ONLY_REF_SPLICE | YES | 1646 | 175 | 0.43 | 4.06 | GT | 1.9086 | AG | 1.8323 | 2.4201 | 5144 | 0 |
| NCOA4--RET | 11 | 4 | 11.00 | 0.06 | NCOA4^ENSG00000266412.6 | 9076 | chr10:46012882:- | RET^ENSG00000165731.20 | 30129 | chr10:43116586:+ | INCL_NON_REF_SPLICE | YES | 1641 | 190 | 0.01 | 0.08 | TC | 1.8323 | GA | 1.8323 | 0.0375 | 5142 | 0 |
| EML4--ALK | 585 | 0 | 585.00 | 0.00 | EML4^ENSG00000143924.19 | 17400 | chr2:42295516:+ | ALK^ENSG00000171094.18 | 59003 | chr2:29223528:- | ONLY_REF_SPLICE | YES | 389 | 57 | 1.50 | 10.10 | GT | 1.6895 | AG | 1.9086 | 1.9858 | 1550 | 0 |
| CCDC6--RET | 569 | 0 | 569.00 | 0.00 | CCDC6^ENSG00000108091.11 | 1435 | chr10:59906122:- | RET^ENSG00000165731.20 | 31587 | chr10:43116584:+ | ONLY_REF_SPLICE | YES | 1252 | 175 | 0.45 | 3.24 | GT | 1.8892 | AG | 1.8323 | 1.9315 | 2092 | 0 |
| SLC34A2--ROS1 | 547 | 6 | 547.00 | 5.97 | SLC34A2^ENSG00000157765.13 | 6084 | chr4:25664330:+ | ROS1^ENSG00000047936.11 | 58025 | chr6:117324415:- | ONLY_REF_SPLICE | YES | 0 | 24 | 554.00 | 22.16 | GT | 1.8892 | AG | 1.7465 | 1.8771 | 999 | 0 |
| SLC34A2--ROS1 | 4 | 2 | 4.00 | 0.01 | SLC34A2^ENSG00000157765.13 | 6088 | chr4:25664334:+ | ROS1^ENSG00000047936.11 | 58030 | chr6:117324410:- | INCL_NON_REF_SPLICE | YES | 0 | 41 | 7.00 | 0.17 | GA | 1.7465 | AT | 1.9086 | 0.0136 | 1004 | 0 |
| SLC34A2--ROS1 | 3 | 2 | 3.00 | 0.01 | SLC34A2^ENSG00000157765.13 | 6088 | chr4:25664334:+ | ROS1^ENSG00000047936.11 | 58028 | chr6:117324412:- | INCL_NON_REF_SPLICE | YES | 0 | 36 | 6.00 | 0.16 | GA | 1.7465 | TG | 1.8892 | 0.0102 | 1002 | 0 |
| KIF5B--RET | 522 | 3 | 522.00 | 2.93 | KIF5B^ENSG00000170759.11 | 19977 | chr10:32017143:- | RET^ENSG00000165731.20 | 38832 | chr10:43114480:+ | ONLY_REF_SPLICE | YES | 983 | 8 | 0.53 | 58.44 | GT | 1.9656 | AG | 1.9656 | 1.7818 | 3178 | 0 |
| KIF5B--RET | 8 | 3 | 8.00 | 0.04 | KIF5B^ENSG00000170759.11 | 19970 | chr10:32017150:- | RET^ENSG00000165731.20 | 38827 | chr10:43114475:+ | INCL_NON_REF_SPLICE | YES | 1025 | 1 | 0.01 | 6.00 | CA | 1.9656 | CC | 1.9656 | 0.0273 | 3187 | 0 |
| KIF5B--RET | 8 | 0 | 8.00 | 0.00 | KIF5B^ENSG00000170759.11 | 19876 | chr10:32017244:- | RET^ENSG00000165731.20 | 38956 | chr10:43114604:+ | INCL_NON_REF_SPLICE | YES | 1317 | 126 | 0.01 | 0.07 | TG | 1.3753 | CC | 1.8892 | 0.0272 | 3222 | 0 |
| KIF5B--RET | 4 | 3 | 4.00 | 0.02 | KIF5B^ENSG00000170759.11 | 19975 | chr10:32017145:- | RET^ENSG00000165731.20 | 38862 | chr10:43114510:+ | INCL_NON_REF_SPLICE | NO | 1005 | 48 | 0.01 | 0.16 | TG | 1.9899 | GG | 1.9086 | 0.0137 | 3168 | 0 |
| CD74--ROS1 | 493 | 0 | 493.00 | 0.00 | CD74^ENSG00000019582.16 | 4990 | chr5:150404680:- | ROS1^ENSG00000047936.11 | 48731 | chr6:117324415:- | ONLY_REF_SPLICE | YES | 18230 | 24 | 0.03 | 19.76 | GT | 1.7819 | AG | 1.7465 | 1.6735 | 2407 | 0 |
| CD74--ROS1 | 9 | 0 | 9.00 | 0.00 | CD74^ENSG00000019582.16 | 4992 | chr5:150404678:- | ROS1^ENSG00000047936.11 | 48732 | chr6:117324414:- | INCL_NON_REF_SPLICE | YES | 18241 | 25 | 0.00 | 0.38 | AC | 1.9329 | GA | 1.8295 | 0.0306 | 2408 | 0 |
| TFG--NTRK1 | 288 | 1 | 288.00 | 1.00 | TFG^ENSG00000114354.15 | 9135 | chr3:100732672:+ | NTRK1^ENSG00000198400.13 | 37655 | chr1:156874571:+ | ONLY_REF_SPLICE | YES | 1245 | 14 | 0.23 | 19.33 | GT | 1.9329 | AG | 1.6895 | 0.981 | 883 | 0 |
| PAX8--PPARG | 262 | 0 | 262.00 | 0.00 | PAX8^ENSG00000125618.18 | 9714 | chr2:113235394:- | PPARG^ENSG00000132170.23 | 31404 | chr3:12379704:+ | ONLY_REF_SPLICE | YES | 34 | 9 | 7.51 | 26.30 | GT | 1.8295 | AG | 1.9329 | 0.8894 | 1923 | 0 |
| SLC45A3--BRAF | 248 | 0 | 248.00 | 0.00 | SLC45A3^ENSG00000158715.6 | 1116 | chr1:205680394:- | BRAF^ENSG00000157764.14 | 25172 | chr7:140794467:- | ONLY_REF_SPLICE | YES | 2 | 928 | 83.00 | 0.27 | GT | 1.5628 | AG | 1.7465 | 0.8418 | 2599 | 0 |
| EGFR--SEPTIN14 | 247 | 1 | 247.00 | 1.00 | EGFR^ENSG00000146648.19 | 30734 | chr7:55200413:+ | SEPTIN14^ENSG00000154997.9 | 54769 | chr7:55796092:- | ONLY_REF_SPLICE | YES | 8 | 23 | 27.67 | 10.38 | GT | 1.8892 | AG | 1.9899 | 0.8418 | 658 | 0 |
| STX16--NPEPL1 | 157 | 0 | 157.00 | 0.00 | STX16^ENSG00000124222.22 | 8855 | chr20:58673711:+ | NPEPL1^ENSG00000215440.12 | 17277 | chr20:58691724:+ | ONLY_REF_SPLICE | YES | 908 | 144 | 0.17 | 1.09 | GT | 1.7968 | AG | 1.8256 | 0.5329 | 1940 | 0 |
| STX16--NPEPL1 | 4 | 0 | 4.00 | 0.00 | STX16^ENSG00000124222.22 | 7774 | chr20:58671297:+ | NPEPL1^ENSG00000215440.12 | 17277 | chr20:58691724:+ | ONLY_REF_SPLICE | YES | 965 | 144 | 0.01 | 0.03 | GT | 1.8062 | AG | 1.8256 | 0.0136 | 2729 | 0 |
| STX16--NPEPL1 | 1 | 0 | 1.00 | 0.00 | STX16^ENSG00000124222.22 | 8855 | chr20:58673711:+ | NPEPL1^ENSG00000215440.12 | 21146 | chr20:58698684:+ | ONLY_REF_SPLICE | YES | 908 | 485 | 0.00 | 0.00 | GT | 1.7968 | AG | 1.9899 | 0.0034 | 2583 | 0 |
| TLK2--AC240565.1 | 63 | 0 | 63.00 | 0.00 | TLK2^ENSG00000146872.18 | 17137 | chr17:62560126:+ | AC240565.1^ENSG00000280136.2 | 41242 | chr17:106864:- | ONLY_REF_SPLICE | YES | 401 | 40 | 0.16 | 1.56 | GT | 1.8892 | AG | 1.8892 | 0.2139 | 1734 | 0 |
| EFL1--GOLGA6L11P | 16 | 0 | 16.00 | 0.00 | EFL1^ENSG00000140598.15 | 16923 | chr15:82214717:- | GOLGA6L11P^ENSG00000223698.3 | 29147 | chrY:24169914:+ | ONLY_REF_SPLICE | YES | 257 | 0 | 0.07 | 17.00 | GT | 1.9086 | AG | 1.5058 | 0.0543 | 2639 | 0 |
31 rows