File Info
- Filename
- multiqc_general_stats_controls.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0004/B23KMKGLT4/nfcore_rnafusion__2cae617--20260515-145204/QC/multiqc/multiqc_data/multiqc_general_stats_controls.tsv
- Size
- 1.8 KB
- Workflow Run
- dev_rna_exp0004_2cae617
- Published
- May 16, 2026 7:20 AM
Content
View in new tab| sample_id | FRAGMENT_LENGTH_MEAN | FRAGMENT_LENGTH_MEDIAN | PCT_MITO_EST_COUNTS | PCT_RIBO_EST_COUNTS | PCT_HK_EST_COUNTS | PCT_MALE_EST_COUNTS | MITOCHONDRIAL_CONTAMINATION | RIBOSOMAL_CONTAMINATION | PCT_HK_TPM | PCT_MALE_TPM | READS | FRAC_UNMAPPED | FRAC_DUPES | UNIQUE_READS | FRAC_READS_ON_TARGET | FRAC_PAIRS_ON_TARGET | FRAC_READS_OFF_TARGET | FRAC_PAIRS_OFF_TARGET | READS_ON_TARGET | PAIRS_ON_TARGET | READS_OFF_TARGET | PAIRS_OFF_TARGET | MEAN_DEPTH | Q50_DEPTH | FRAC_BASES_GT30X | FRAC_BASES_GT100X | N_Q30 | GC_BIAS | TOTAL_READS | EXPECTED_DISTINCT | IS_CONTAMINATED | CONTAMINATION_PCT | SUMMED_MEDIAN | SUMMED_MEAN | PERCENT_DUPLICATION | PCT_RIBOSOMAL_BASES | PCT_MRNA_BASES | PROPER_PAIRS_PERCENT | UNIQUELY_MAPPED_PERCENT | MAPPED_READS | PCT_DUPLICATION | AFTER_FILTERING_Q30_RATE | AFTER_FILTERING_Q30_BASES | FILTERING_RESULT_PASSED_FILTER_READS | AFTER_FILTERING_GC_CONTENT | PCT_SURVIVING | PCT_ADAPTER | FRAGMENT_LENGTH | PERCENT_ALIGNED | PSEUDOALIGNED_READS | PERCENT_DUPLICATES | PERCENT_GC | AVG_SEQUENCE_LENGTH | MEDIAN_SEQUENCE_LENGTH | PERCENT_FAILS | TOTAL_SEQUENCES |
| FFPE_HD789_02_RNA_0011_23KMKGLT4_1 | 154.7 | 141.0 | 0.07 | 1.52 | 0.48 | 0.0 | 0.15 | 4.44 | 0.76 | 0.0 | 591587092.0 | 0.004881 | 0.452074 | 324145760.0 | 0.911459 | 0.935859 | 0.079633 | 0.064141 | 295445618.0 | 149791333.0 | 25812759.0 | 10266272.0 | 606.816472 | 270.0 | 0.722446 | 0.623627 | 0.970422 | 0.0 | 9999000000.0 | 425342958.0 | Yes | 62.58 | 182 | 419.505564 | 0.454292 | 9.999999999999999e-05 | 95.7892 | 89.42293673314897 | 96.07 | 284168082.0 | 30.3628 | 0.969612 | 75981462866.0 | 591587092.0 | 0.553879 | 98.59784866666666 | 49.874373999999996 | |||||||||
| NTC_0001_0001_23KMKGLT4_1 | 52.3 | 31.0 | 0.02 | 0.02 | 0.01 | 0.0 | 0.01 | 0.06 | 0.0 | 0.0 | 995102.0 | 0.58812 | 0.355787 | 641058.0 | 0.004929 | 0.063038 | 0.082144 | 0.936962 | 3160.0 | 1634.0 | 52659.0 | 24287.0 | 0.004114 | 0.0 | 1e-06 | 0.0 | 0.927214 | 0.0 | 9999000000.0 | 181480.0 | Skipped | N/A | 32 | 29.739752 | 0.863811 | 2.3596 | 5.1007 | 0.8846685170864375 | 2.93 | 14565.0 | 48.7938 | 0.872288 | 63637245.0 | 995102.0 | 0.672851 | 16.067452486389275 | 53.32733327972683 |
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