File Info
- Filename
- run_level_intermediate.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0004/B23KMKGLT4/nfcore_rnafusion__2cae617--20260515-145204/QC_run_metrics/intermediate/run_level_intermediate.tsv
- Size
- 2.7 KB
- Workflow Run
- dev_rna_exp0004_2cae617
- Published
- May 16, 2026 7:21 AM
Content
View in new tab| SAMPLE_ID | SOURCE_QC | ANALYTE | PIPELINE_VERSION | QC_METRIC | VALUE | METRIC_ORIGIN |
| RUN | RNA | rnafusion_3.0.2-gunknown | CLUSTER_DENSITY | 9457.29 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | READS_PASSING_FILTER_PERCENT | 75.1831 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | Q30_RUN_WIDE_PERCENT | 93.5577 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | OCCUPANCY_RATE | 89.7428 | bclconvert | |
| RUN | RNA | rnafusion_3.0.2-gunknown | YIELD_IN_GB | 9262.302010816 | bclconvert | |
| FFPE_HD789_02_RNA_0011_23KMKGLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS | 398309082 | bclconvert |
| NTC_0001_0001_23KMKGLT4_1 | NTC | RNA | rnafusion_3.0.2-gunknown | READS | 3096639 | bclconvert |
| FFPE_HD789_02_RNA_0011_23KMKGLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_SEQTOOLS | 591587092.0 | seqtools |
| FFPE_HD789_02_RNA_0011_23KMKGLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_READS_ON_TARGET | 0.911459 | seqtools |
| FFPE_HD789_02_RNA_0011_23KMKGLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_PAIRS_ON_TARGET | 0.935859 | seqtools |
| FFPE_HD789_02_RNA_0011_23KMKGLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_READS_OFF_TARGET | 0.079633 | seqtools |
| FFPE_HD789_02_RNA_0011_23KMKGLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_PAIRS_OFF_TARGET | 0.064141 | seqtools |
| FFPE_HD789_02_RNA_0011_23KMKGLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_ON_TARGET | 295445618.0 | seqtools |
| FFPE_HD789_02_RNA_0011_23KMKGLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PAIRS_ON_TARGET | 149791333.0 | seqtools |
| FFPE_HD789_02_RNA_0011_23KMKGLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | READS_OFF_TARGET | 25812759.0 | seqtools |
| FFPE_HD789_02_RNA_0011_23KMKGLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PAIRS_OFF_TARGET | 10266272.0 | seqtools |
| FFPE_HD789_02_RNA_0011_23KMKGLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | GC_BIAS | 0.0 | seqtools |
| FFPE_HD789_02_RNA_0011_23KMKGLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | MAPPED_READS | 284168082.0 | star |
| FFPE_HD789_02_RNA_0011_23KMKGLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAC_UNMAPPED | 0.004881 | star |
| FFPE_HD789_02_RNA_0011_23KMKGLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | FRAGMENT_LENGTH_MEDIAN | 141.0 | kallisto |
| FFPE_HD789_02_RNA_0011_23KMKGLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | MITOCHONDRIAL_CONTAMINATION | 0.15 | kallisto |
| FFPE_HD789_02_RNA_0011_23KMKGLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | RIBOSOMAL_CONTAMINATION | 4.44 | kallisto |
| FFPE_HD789_02_RNA_0011_23KMKGLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | PCT_CONTAMINATION | 62.58 | contamination |
| NTC_0001_0001_23KMKGLT4_1 | NTC | RNA | rnafusion_3.0.2-gunknown | READS_SEQTOOLS | 995102.0 | seqtools |
| FFPE_HD789_02_RNA_0011_23KMKGLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | NUMBER_ALL_RNA_FUSIONS | 53 | fusion |
| FFPE_HD789_02_RNA_0011_23KMKGLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | NUMBER_TRUE_RNA_FUSIONS | 0 | fusion |
| FFPE_HD789_02_RNA_0011_23KMKGLT4_1 | HD789 | RNA | rnafusion_3.0.2-gunknown | NUMBER_FALSE_RNA_FUSIONS | 53 | fusion |
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