File Info
- Filename
- FFPE_V4_0001_RNA_0001_23KMKGLT4_1.fusions.csv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0004/B23KMKGLT4/nfcore_rnafusion_100M__5f1fa79--20260304-101508/fusionreport/FFPE_V4_0001_RNA_0001_23KMKGLT4_1/FFPE_V4_0001_RNA_0001_23KMKGLT4_1.fusions.csv
- Size
- 8.5 KB
- Workflow Run
- dev_rna_exp0004_5f1fa79
- Published
- Mar 04, 2026 4:34 PM
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| FGFR3--TACC3 | COSMIC,Mitelman,FusionGDB2 | 0.625 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.500 + 0.000) | position: 4:1806934#4:1739702,reading-frame: in-frame,type: duplication,split_reads1: 303,split_reads2: 300,discordant_mates: 8,coverage1: 3703,coverage2: 11307,confidence: high | position: chr4:1806934:+#chr4:1739702:+,junction_reads: 1313,spanning_reads: 7,ffmp: 13.3902 |
| TMPRSS2--ERG | COSMIC,Mitelman,FusionGDB2 | 0.625 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.500 + 0.000) | position: 21:41508081#21:38584945,reading-frame: .,type: deletion,split_reads1: 112,split_reads2: 269,discordant_mates: 0,coverage1: 362,coverage2: 4184,confidence: high | position: chr21:41508081:-#chr21:38584945:-,junction_reads: 611,spanning_reads: 0,ffmp: 6.1981 |
| LMNA--NTRK1 | COSMIC,Mitelman,FusionGDB2 | 0.625 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.500 + 0.000) | position: 1:156130773#1:156874906,reading-frame: in-frame,type: deletion,split_reads1: 228,split_reads2: 244,discordant_mates: 7,coverage1: 10032,coverage2: 3702,confidence: high | position: chr1:156130773:+#chr1:156874906:+,junction_reads: 517,spanning_reads: 8,ffmp: 5.3257 |
| ETV6--NTRK3 | COSMIC,Mitelman,FusionGDB2 | 0.625 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.500 + 0.000) | position: 12:11869969#15:87940753,reading-frame: in-frame,type: translocation,split_reads1: 282,split_reads2: 149,discordant_mates: 0,coverage1: 7375,coverage2: 577,confidence: high | position: chr12:11869969:+#chr15:87940753:-,junction_reads: 480,spanning_reads: 1,ffmp: 4.8793 |
| FGFR3--BAIAP2L1 | COSMIC,Mitelman,FusionGDB2 | 0.625 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.500 + 0.000) | position: 4:1806934#7:98362432,reading-frame: in-frame,type: translocation,split_reads1: 290,split_reads2: 88,discordant_mates: 2,coverage1: 3703,coverage2: 240,confidence: high | position: chr4:1806934:+#chr7:98362432:-,junction_reads: 400,spanning_reads: 2,ffmp: 4.0779 |
| SLC34A2--ROS1 | COSMIC,Mitelman,FusionGDB2 | 0.625 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.500 + 0.000) | position: 4:25664330#6:117324415,reading-frame: in-frame,type: translocation,split_reads1: 46,split_reads2: 263,discordant_mates: 8,coverage1: 957,coverage2: 1475,confidence: high | position: chr4:25664330:+#chr6:117324415:-,junction_reads: 391,spanning_reads: 10,ffmp: 4.0677 |
| TPM3--NTRK1 | COSMIC,Mitelman,FusionGDB2 | 0.625 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.500 + 0.000) | position: 1:154170400#1:156874571,reading-frame: in-frame,type: inversion,split_reads1: 223,split_reads2: 114,discordant_mates: 3,coverage1: 34100,coverage2: 1273,confidence: high | position: chr1:154170400:-#chr1:156874571:+,junction_reads: 387,spanning_reads: 3,ffmp: 3.9562 |
| CD74--ROS1 | COSMIC,Mitelman,FusionGDB2 | 0.625 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.500 + 0.000) | position: 5:150404680#6:117324415,reading-frame: in-frame,type: translocation,split_reads1: 96,split_reads2: 236,discordant_mates: 3,coverage1: 65535,coverage2: 1475,confidence: medium | position: chr5:150404680:-#chr6:117324415:-,junction_reads: 379,spanning_reads: 3,ffmp: 3.875 |
| NCOA4--RET | COSMIC,Mitelman,FusionGDB2 | 0.625 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.500 + 0.000) | position: 10:46012883#10:43116584,reading-frame: in-frame,type: inversion,split_reads1: 140,split_reads2: 181,discordant_mates: 2,coverage1: 7395,coverage2: 2636,confidence: high | position: chr10:46012883:-#chr10:43116584:+,junction_reads: 361,spanning_reads: 2,ffmp: 3.6823 |
| CCDC6--RET | COSMIC,Mitelman,FusionGDB2 | 0.625 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.500 + 0.000) | position: 10:59906122#10:43116584,reading-frame: in-frame,type: inversion,split_reads1: 134,split_reads2: 183,discordant_mates: 1,coverage1: 6479,coverage2: 2636,confidence: high | position: chr10:59906122:-#chr10:43116584:+,junction_reads: 350,spanning_reads: 1,ffmp: 3.5605 |
| KIF5B--RET | COSMIC,Mitelman,FusionGDB2 | 0.625 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.500 + 0.000) | position: 10:32017143#10:43114480,reading-frame: in-frame,type: inversion,split_reads1: 60,split_reads2: 255,discordant_mates: 7,coverage1: 3037,coverage2: 864,confidence: high | position: chr10:32017143:-#chr10:43114480:+,junction_reads: 347,spanning_reads: 7,ffmp: 3.591 |
| SLC45A3--BRAF | COSMIC,Mitelman,FusionGDB2 | 0.625 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.500 + 0.000) | position: 1:205680394#7:140794467,reading-frame: .,type: translocation,split_reads1: 26,split_reads2: 129,discordant_mates: 0,coverage1: 31,coverage2: 3362,confidence: high | position: chr1:205680394:-#chr7:140794467:-,junction_reads: 171,spanning_reads: 0,ffmp: 1.7346 |
| PAX8--PPARG | COSMIC,Mitelman,FusionGDB2 | 0.625 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.500 + 0.000) | position: 2:113235394#3:12379704,reading-frame: in-frame,type: translocation,split_reads1: 89,split_reads2: 74,discordant_mates: 0,coverage1: 528,coverage2: 143,confidence: high | position: chr2:113235394:-#chr3:12379704:+,junction_reads: 162,spanning_reads: 0,ffmp: 1.6433 |
| TFG--NTRK1 | COSMIC,Mitelman,FusionGDB2 | 0.625 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.500 + 0.000) | position: 3:100732672#1:156874571,reading-frame: in-frame,type: translocation,split_reads1: 55,split_reads2: 46,discordant_mates: 0,coverage1: 2938,coverage2: 1273,confidence: high | position: chr3:100732672:+#chr1:156874571:+,junction_reads: 128,spanning_reads: 0,ffmp: 1.2984 |
| EML4--ALK | COSMIC,Mitelman,FusionGDB2 | 0.625 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.500 + 0.000) | position: 2:42295516#2:29223528,reading-frame: in-frame,type: inversion,split_reads1: 15,split_reads2: 76,discordant_mates: 0,coverage1: 2518,coverage2: 541,confidence: high | position: chr2:42295516:+#chr2:29223528:-,junction_reads: 119,spanning_reads: 0,ffmp: 1.2071 |
| EGFR--SEPTIN14 | Mitelman | 0.375 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500) | position: 7:55200413#7:55796092,reading-frame: in-frame,type: inversion,split_reads1: 2,split_reads2: 17,discordant_mates: 1,coverage1: 258,coverage2: 53,confidence: high | position: chr7:55200413:+#chr7:55796092:-,junction_reads: 110,spanning_reads: 1,ffmp: 1.126 |
| TPTE2--MRPS31P2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr13:19475573:-#chr13:19570288:-,junction_reads: 6,spanning_reads: 0,ffmp: 0.0609 | ||
| EGFR--AC069287.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: 7:55200413#11:121426,reading-frame: out-of-frame,type: translocation,split_reads1: 50,split_reads2: 15,discordant_mates: 0,coverage1: 258,coverage2: 49,confidence: high | ||
| NOM1--MNX1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: 7:156992944#7:156994181,reading-frame: .,type: duplication,split_reads1: 2,split_reads2: 5,discordant_mates: 0,coverage1: 2,coverage2: 86,confidence: high | ||
| MNX1--MNX1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: 7:156992944#7:156994181,reading-frame: .,type: duplication,split_reads1: 2,split_reads2: 5,discordant_mates: 0,coverage1: 2,coverage2: 86,confidence: high | ||
| AF254983.1--MRPS31P2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: 21:10559544#13:19570288,reading-frame: .,type: translocation,split_reads1: 4,split_reads2: 1,discordant_mates: 0,coverage1: 4,coverage2: 10,confidence: high | ||
| TPTE--MRPS31P2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: 21:10559544#13:19570288,reading-frame: out-of-frame,type: translocation,split_reads1: 4,split_reads2: 1,discordant_mates: 0,coverage1: 4,coverage2: 10,confidence: high | ||
| IGHV3-48--AHCTF1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: 14:106537812#1:246903669,reading-frame: out-of-frame,type: translocation,split_reads1: 25,split_reads2: 0,discordant_mates: 0,coverage1: 10973,coverage2: 3,confidence: medium | ||
| BUB1B-PAK6--BUB1B | 0.062 | 0.5 * (0.125) + 0.5 * () | position: 15:40220717#15:40165053,reading-frame: .,type: duplication,split_reads1: 3,split_reads2: 2,discordant_mates: 0,coverage1: 635,coverage2: 588,confidence: medium | ||
| MRPS18A--GAPVD1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: 6:43687668#9:125329021,reading-frame: out-of-frame,type: translocation/5'-5',split_reads1: 2,split_reads2: 1,discordant_mates: 0,coverage1: 1536,coverage2: 5,confidence: medium | ||
| RET--ROBO2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: 10:43119686#3:77634153,reading-frame: out-of-frame,type: translocation/5'-5',split_reads1: 8,split_reads2: 0,discordant_mates: 0,coverage1: 835,coverage2: 3,confidence: low | ||
| AC105105.1--MALT1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: 18:58536660#18:58681170,reading-frame: .,type: deletion/read-through,split_reads1: 0,split_reads2: 4,discordant_mates: 0,coverage1: 740,coverage2: 2326,confidence: low | ||
| CCNJ--PBX3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: 10:96044462#9:125915686,reading-frame: out-of-frame,type: translocation,split_reads1: 1,split_reads2: 1,discordant_mates: 0,coverage1: 255,coverage2: 1101,confidence: low |
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