#FusionName	JunctionReadCount	SpanningFragCount	est_J	est_S	LeftGene	LeftLocalBreakpoint	LeftBreakpoint	RightGene	RightLocalBreakpoint	RightBreakpoint	SpliceType	LargeAnchorSupport	NumCounterFusionLeft	NumCounterFusionRight	FAR_left	FAR_right	LeftBreakDinuc	LeftBreakEntropy	RightBreakDinuc	RightBreakEntropy	FFPM	microh_brkpt_dist	num_microh_near_brkpt
FGFR3--TACC3	2314	9	2314.00	8.99	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	TACC3^ENSG00000013810.20	27590	chr4:1739702:+	ONLY_REF_SPLICE	YES	58	2005	39.39	1.16	GT	1.8892	AG	1.7819	23.5647	627	0
FGFR3--TACC3	3	9	3.00	0.01	FGFR3^ENSG00000068078.20	9880	chr4:1806936:+	TACC3^ENSG00000013810.20	27593	chr4:1739705:+	INCL_NON_REF_SPLICE	YES	7	2059	1.62	0.01	GA	1.8892	TA	1.5219	0.0305	623	0
TMPRSS2--ERG	1526	0	1526.00	0.00	TMPRSS2^ENSG00000184012.14	4652	chr21:41508081:-	ERG^ENSG00000157554.19	28751	chr21:38584945:-	ONLY_REF_SPLICE	YES	7	66	190.88	22.79	GT	1.6895	AG	1.9219	15.4799	1104	0
TMPRSS2--ERG	3	0	3.00	0.00	TMPRSS2^ENSG00000184012.14	4654	chr21:41508079:-	ERG^ENSG00000157554.19	28759	chr21:38584937:-	INCL_NON_REF_SPLICE	YES	0	114	4.00	0.03	GA	1.7232	CC	1.9329	0.0304	1112	0
ETV6--NTRK3	682	1	682.00	1.00	ETV6^ENSG00000139083.11	11237	chr12:11869969:+	NTRK3^ENSG00000140538.16	46238	chr15:87940753:-	ONLY_REF_SPLICE	YES	1980	13	0.35	48.86	GT	1.7819	AG	1.9656	6.9284	1252	0
LMNA--NTRK1	668	7	668.00	7.00	LMNA^ENSG00000160789.23	17733	chr1:156130773:+	NTRK1^ENSG00000198400.13	40289	chr1:156874906:+	ONLY_REF_SPLICE	YES	2834	222	0.24	3.03	GT	1.7465	AG	1.5058	6.8473	947	0
FGFR3--BAIAP2L1	640	2	640.00	2.00	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	BAIAP2L1^ENSG00000006453.14	16927	chr7:98362432:-	ONLY_REF_SPLICE	YES	60	24	10.54	25.72	GT	1.8892	AG	1.8062	6.5125	1171	0
TPM3--NTRK1	558	3	558.00	3.00	TPM3^ENSG00000143549.21	13389	chr1:154170400:-	NTRK1^ENSG00000198400.13	42070	chr1:156874571:+	ONLY_REF_SPLICE	YES	5450	23	0.10	23.42	GT	1.9329	AG	1.6895	5.6908	355	0
CCDC6--RET	458	1	458.00	1.00	CCDC6^ENSG00000108091.11	1435	chr10:59906122:-	RET^ENSG00000165731.20	31587	chr10:43116584:+	ONLY_REF_SPLICE	YES	1401	404	0.33	1.14	GT	1.8892	AG	1.8323	4.6561	2092	0
NCOA4--RET	455	2	455.00	2.00	NCOA4^ENSG00000266412.6	9075	chr10:46012883:-	RET^ENSG00000165731.20	30127	chr10:43116584:+	ONLY_REF_SPLICE	YES	1882	404	0.24	1.13	GT	1.9086	AG	1.8323	4.6359	5144	0
KIF5B--RET	439	7	439.00	7.00	KIF5B^ENSG00000170759.11	19977	chr10:32017143:-	RET^ENSG00000165731.20	38832	chr10:43114480:+	ONLY_REF_SPLICE	YES	953	12	0.47	34.38	GT	1.9656	AG	1.9656	4.5243	3178	0
SLC34A2--ROS1	416	10	416.00	10.00	SLC34A2^ENSG00000157765.13	6084	chr4:25664330:+	ROS1^ENSG00000047936.11	58025	chr6:117324415:-	ONLY_REF_SPLICE	YES	0	25	427.00	16.42	GT	1.8892	AG	1.7465	4.3213	999	0
CD74--ROS1	402	3	402.00	3.00	CD74^ENSG00000019582.16	4990	chr5:150404680:-	ROS1^ENSG00000047936.11	48731	chr6:117324415:-	ONLY_REF_SPLICE	YES	20351	26	0.02	15.04	GT	1.7819	AG	1.7465	4.1083	2407	0
EML4--ALK	310	0	310.00	0.00	EML4^ENSG00000143924.19	17400	chr2:42295516:+	ALK^ENSG00000171094.18	59003	chr2:29223528:-	ONLY_REF_SPLICE	YES	384	25	0.81	11.96	GT	1.6895	AG	1.9086	3.1447	1550	0
PAX8--PPARG	217	0	217.00	0.00	PAX8^ENSG00000125618.18	9714	chr2:113235394:-	PPARG^ENSG00000132170.23	31404	chr3:12379704:+	ONLY_REF_SPLICE	YES	61	1	3.52	109.00	GT	1.8295	AG	1.9329	2.2013	1923	0
TFG--NTRK1	203	0	203.00	0.00	TFG^ENSG00000114354.15	9135	chr3:100732672:+	NTRK1^ENSG00000198400.13	37655	chr1:156874571:+	ONLY_REF_SPLICE	YES	1285	23	0.16	8.50	GT	1.9329	AG	1.6895	2.0593	883	0
SLC45A3--BRAF	201	0	201.00	0.00	SLC45A3^ENSG00000158715.6	1116	chr1:205680394:-	BRAF^ENSG00000157764.14	25172	chr7:140794467:-	ONLY_REF_SPLICE	YES	0	953	202.00	0.21	GT	1.5628	AG	1.7465	2.039	2599	0
EGFR--SEPTIN14	163	1	163.00	1.00	EGFR^ENSG00000146648.19	30734	chr7:55200413:+	SEPTIN14^ENSG00000154997.9	54769	chr7:55796092:-	ONLY_REF_SPLICE	YES	2	1	55.00	82.50	GT	1.8892	AG	1.9899	1.6636	658	0
AC105105.1--MALT1	7	0	7.00	0.00	AC105105.1^ENSG00000267257.1	2246	chr18:58536660:+	MALT1^ENSG00000172175.15	35537	chr18:58659863:+	INCL_NON_REF_SPLICE	YES	334	2	0.02	2.67	GT	1.9086	AG	1.9086	0.071	290	0
AC105105.1--MALT1	4	0	4.00	0.00	AC105105.1^ENSG00000267257.1	2246	chr18:58536660:+	MALT1^ENSG00000172175.15	56844	chr18:58681170:+	INCL_NON_REF_SPLICE	YES	334	1105	0.01	0.00	GT	1.9086	AG	1.9899	0.0406	227	0
AC105105.1--MALT1	3	0	3.00	0.00	AC105105.1^ENSG00000267257.1	2246	chr18:58536660:+	MALT1^ENSG00000172175.15	34184	chr18:58658510:+	INCL_NON_REF_SPLICE	YES	334	0	0.01	4.00	GT	1.9086	AG	1.9329	0.0304	828	0
TPTE2--MRPS31P2	5	0	5.00	0.00	TPTE2^ENSG00000132958.17	7180	chr13:19475573:-	MRPS31P2^ENSG00000232894.1	24910	chr13:19570288:-	ONLY_REF_SPLICE	YES	26	0	0.22	6.00	GT	1.8295	AG	1.9656	0.0507	4299	0
CCNJ--PBX3	2	0	2.00	0.00	CCNJ^ENSG00000107443.16	2069	chr10:96044462:+	PBX3^ENSG00000167081.18	22314	chr9:125915686:+	ONLY_REF_SPLICE	YES	136	607	0.02	0.00	GT	1.9656	AG	1.9899	0.0203	1173	0