File Info
- Filename
- FFPE_HD835_01_RNA_0001_23LGNLLT4_3.fusions.csv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0005/A23LGNLLT4/nfcore_rnafusion__2cae617--20260515-145204/fusionreport/FFPE_HD835_01_RNA_0001_23LGNLLT4_3/FFPE_HD835_01_RNA_0001_23LGNLLT4_3.fusions.csv
- Size
- 6.3 KB
- Workflow Run
- dev_rna_exp0005_2cae617
- Published
- May 16, 2026 6:05 AM
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| PANK2--MAVS | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr20:3889728#chr20:3854558,reading-frame: out-of-frame,type: duplication,split_reads1: 300,split_reads2: 298,discordant_mates: 35,coverage1: 4092,coverage2: 1056,confidence: high | position: chr20:3889728:+#chr20:3854558:+,junction_reads: 1244,spanning_reads: 36,ffmp: 4.3306 | |
| TCF7L2--AL158212.1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr10:113040126#chr10:112888735,reading-frame: out-of-frame,type: duplication,split_reads1: 291,split_reads2: 92,discordant_mates: 31,coverage1: 13289,coverage2: 170,confidence: high | position: chr10:113040126:+#chr10:112888735:+,junction_reads: 723,spanning_reads: 30,ffmp: 2.5249 | |
| SPAG9--MBTD1 | Mitelman,FusionGDB2 | 0.375 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.000) | position: chr17:51120354#chr17:51201696,reading-frame: in-frame,type: duplication,split_reads1: 112,split_reads2: 55,discordant_mates: 3,coverage1: 3923,coverage2: 1580,confidence: high | position: chr17:51120354:-#chr17:51201696:-,junction_reads: 173,spanning_reads: 3,ffmp: 0.595 |
| GDPD5--MAP6 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr11:75477619#chr11:75608322,reading-frame: out-of-frame,type: duplication,split_reads1: 30,split_reads2: 57,discordant_mates: 7,coverage1: 1240,coverage2: 105,confidence: high | position: chr11:75477619:-#chr11:75608322:-,junction_reads: 90,spanning_reads: 12,ffmp: 0.3451 | |
| ARHGAP29-AS1--NME2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:94249519:+#chr17:51169937:+,junction_reads: 22,spanning_reads: 0,ffmp: 0.0744 | ||
| PALLD--PPM1D | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr4:168711923#chr17:60656599,reading-frame: out-of-frame,type: translocation,split_reads1: 8,split_reads2: 10,discordant_mates: 1,coverage1: 149,coverage2: 1084,confidence: high | position: chr4:168711923:+#chr17:60656599:+,junction_reads: 18,spanning_reads: 1,ffmp: 0.0643 | |
| MIR4713HG--GLDN | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr15:51037681:+#chr15:51377449:+,junction_reads: 17,spanning_reads: 3,ffmp: 0.0667 | ||
| TLK2--AC240565.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:62560126:+#chr17:106864:-,junction_reads: 10,spanning_reads: 0,ffmp: 0.0103 | ||
| GUSBP13--NAIP | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr5:69920867:+#chr5:71003857:-,junction_reads: 9,spanning_reads: 0,ffmp: 0.0051 | ||
| COMMD10--AP3S1 | Mitelman,FusionGDB2 | 0.312 | 0.5 * (0.125) + 0.5 * (0.500 + 0.000) | position: chr5:116092700#chr5:115895087,reading-frame: in-frame,type: duplication,split_reads1: 96,split_reads2: 179,discordant_mates: 13,coverage1: 2313,coverage2: 16213,confidence: high | |
| SND1--ZNF800 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr7:127698953#chr7:127405119,reading-frame: out-of-frame,type: duplication/5'-5',split_reads1: 133,split_reads2: 79,discordant_mates: 6,coverage1: 36295,coverage2: 132,confidence: high | ||
| SMAD3--AC087482.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr15:67165384#chr15:67030801,reading-frame: out-of-frame,type: duplication/5'-5',split_reads1: 80,split_reads2: 52,discordant_mates: 9,coverage1: 6327,coverage2: 85,confidence: high | ||
| AC005993.1--RGS6 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr14:71916030#chr14:71964772,reading-frame: .,type: deletion/read-through,split_reads1: 33,split_reads2: 90,discordant_mates: 11,coverage1: 193,coverage2: 838,confidence: high | |
| NPIPA1--AC138969.3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr16:14932796#chr16:16351593,reading-frame: .,type: deletion/5'-5',split_reads1: 26,split_reads2: 55,discordant_mates: 0,coverage1: 2874,coverage2: 629,confidence: high | ||
| PKD1P3--AC138969.3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr16:14932796#chr16:16351593,reading-frame: .,type: deletion/5'-5',split_reads1: 26,split_reads2: 55,discordant_mates: 0,coverage1: 2874,coverage2: 629,confidence: high | ||
| NMT2--AL590365.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr10:15112796#chr10:15189954,reading-frame: out-of-frame,type: duplication,split_reads1: 22,split_reads2: 13,discordant_mates: 0,coverage1: 894,coverage2: 19,confidence: high | ||
| NMT2--FAM171A1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr10:15112796#chr10:15189954,reading-frame: out-of-frame,type: duplication,split_reads1: 22,split_reads2: 13,discordant_mates: 0,coverage1: 894,coverage2: 19,confidence: high | ||
| ACSL1--AC093844.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr4:184760357#chr4:183387470,reading-frame: out-of-frame,type: deletion,split_reads1: 20,split_reads2: 6,discordant_mates: 0,coverage1: 379,coverage2: 9,confidence: high | ||
| ACSL1--AC112698.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr4:184760357#chr4:183387470,reading-frame: out-of-frame,type: deletion,split_reads1: 20,split_reads2: 6,discordant_mates: 0,coverage1: 379,coverage2: 9,confidence: high | ||
| TCF7L2--AL158212.4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr10:113089540#chr10:112886918,reading-frame: out-of-frame,type: duplication,split_reads1: 15,split_reads2: 3,discordant_mates: 0,coverage1: 1597,coverage2: 13,confidence: high | ||
| CDKAL1--AL132775.2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr6:20548705#chr6:20401117,reading-frame: out-of-frame,type: duplication,split_reads1: 15,split_reads2: 2,discordant_mates: 0,coverage1: 1378,coverage2: 6,confidence: high | ||
| CDKAL1--E2F3 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr6:20548705#chr6:20401117,reading-frame: out-of-frame,type: duplication,split_reads1: 15,split_reads2: 2,discordant_mates: 0,coverage1: 1378,coverage2: 6,confidence: high | |
| RN7SKP172--AC078820.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr12:76332804#chr12:75694975,reading-frame: .,type: deletion,split_reads1: 4,split_reads2: 5,discordant_mates: 1,coverage1: 23,coverage2: 21,confidence: high | ||
| BBS10--AC078820.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr12:76332804#chr12:75694975,reading-frame: .,type: deletion,split_reads1: 4,split_reads2: 5,discordant_mates: 1,coverage1: 23,coverage2: 21,confidence: high | ||
| TMEM63A--LEFTY2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:225877395#chr1:225962808,reading-frame: out-of-frame,type: duplication,split_reads1: 5,split_reads2: 3,discordant_mates: 0,coverage1: 957,coverage2: 4,confidence: high | ||
| TMEM63A--NDUFA3P3 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:225877395#chr1:225962808,reading-frame: out-of-frame,type: duplication,split_reads1: 5,split_reads2: 3,discordant_mates: 0,coverage1: 957,coverage2: 4,confidence: high |
27 rows