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Filename
FFPE_HD834_01_RNA_0001_23LGNLLT4_3.FusionInspector.fusions.abridged.tsv
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0005/A23LGNLLT4/nfcore_rnafusion__2cae617--20260515-145204/fusioninspector/FFPE_HD834_01_RNA_0001_23LGNLLT4_3.FusionInspector.fusions.abridged.tsv
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10.6 KB
Workflow Run
dev_rna_exp0005_2cae617
Published
May 16, 2026 6:20 AM

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#FusionName JunctionReadCount SpanningFragCount est_J est_S LeftGene LeftLocalBreakpoint LeftBreakpoint RightGene RightLocalBreakpoint RightBreakpoint SpliceType LargeAnchorSupport NumCounterFusionLeft NumCounterFusionRight FAR_left FAR_right LeftBreakDinuc LeftBreakEntropy RightBreakDinuc RightBreakEntropy FFPM microh_brkpt_dist num_microh_near_brkpt
SLC34A2--ROS1 10343 224 10343.00 217.08 SLC34A2^ENSG00000157765.13 6084 chr4:25664330:+ ROS1^ENSG00000047936.11 54807 chr6:117329446:- ONLY_REF_SPLICE YES 6071 195 1.74 53.92 GT 1.8892 AG 1.9656 35.7171 2210 0
SLC34A2--ROS1 779 75 779.00 5.07 SLC34A2^ENSG00000157765.13 6084 chr4:25664330:+ ROS1^ENSG00000047936.11 58025 chr6:117324415:- ONLY_REF_SPLICE YES 6071 1689 0.14 0.51 GT 1.8892 AG 1.7465 2.6519 999 0
SLC34A2--ROS1 240 82 240.00 1.72 SLC34A2^ENSG00000157765.13 6084 chr4:25664330:+ ROS1^ENSG00000047936.11 56834 chr6:117326414:- ONLY_REF_SPLICE YES 6071 1346 0.05 0.24 GT 1.8892 AG 1.7232 0.8175 183 0
SLC34A2--ROS1 3 224 3.00 0.06 SLC34A2^ENSG00000157765.13 6081 chr4:25664327:+ ROS1^ENSG00000047936.11 54805 chr6:117329448:- INCL_NON_REF_SPLICE YES 6258 76 0.04 2.96 GA 1.8256 AA 1.9329 0.0103 2212 0
SLC34A2--ROS1 38 15 38.00 0.05 SLC34A2^ENSG00000157765.13 6084 chr4:25664330:+ ROS1^ENSG00000047936.11 59109 chr6:117321394:- ONLY_REF_SPLICE YES 6071 2575 0.01 0.02 GT 1.8892 AG 1.9329 0.1287 2083 0
SLC34A2--ROS1 2 82 2.00 0.01 SLC34A2^ENSG00000157765.13 6084 chr4:25664330:+ ROS1^ENSG00000047936.11 55440 chr6:117328813:- ONLY_REF_SPLICE NO 6071 1007 0.01 0.08 GT 1.8892 AG 1.7465 0.0068 1577 0
SLC34A2--ROS1 9 1 9.00 0.00 SLC34A2^ENSG00000157765.13 6084 chr4:25664330:+ ROS1^ENSG00000047936.11 60245 chr6:117320030:- ONLY_REF_SPLICE YES 6071 3508 0.00 0.00 GT 1.8892 AG 1.5301 0.0304 1884 0
SLC34A2--ROS1 5 0 5.00 0.00 SLC34A2^ENSG00000157765.13 6084 chr4:25664330:+ ROS1^ENSG00000047936.11 67854 chr6:117288802:- ONLY_REF_SPLICE YES 6071 2021 0.00 0.00 GT 1.8892 AG 1.7465 0.0169 1399 0
SLC34A2--ROS1 1 0 1.00 0.00 SLC34A2^ENSG00000157765.13 6084 chr4:25664330:+ ROS1^ENSG00000047936.11 63518 chr6:117311117:- ONLY_REF_SPLICE YES 6071 3110 0.00 0.00 GT 1.8892 AG 1.6049 0.0034 2055 0
QKI--NTRK2 7628 136 7628.00 135.75 QKI^ENSG00000112531.17 13018 chr6:163563719:+ NTRK2^ENSG00000148053.17 51327 chr9:84867243:+ ONLY_REF_SPLICE YES 5264 211 1.47 36.63 GT 1.7819 AG 1.8295 26.2591 1599 0
QKI--NTRK2 13 136 13.00 0.23 QKI^ENSG00000112531.17 13019 chr6:163563720:+ NTRK2^ENSG00000148053.17 51329 chr9:84867245:+ INCL_NON_REF_SPLICE YES 5063 275 0.03 0.54 TA 1.5219 GC 1.7968 0.0448 1597 0
QKI--NTRK2 5 36 5.00 0.02 QKI^ENSG00000112531.17 12969 chr6:163563670:+ NTRK2^ENSG00000148053.17 51329 chr9:84867245:+ INCL_NON_REF_SPLICE YES 5025 275 0.01 0.15 CC 1.8892 GC 1.7968 0.017 1628 0
QKI--NTRK2 5 0 5.00 0.00 QKI^ENSG00000112531.17 7043 chr6:163455289:+ NTRK2^ENSG00000148053.17 59733 chr9:84934269:+ INCL_NON_REF_SPLICE YES 5302 4187 0.00 0.00 GT 1.7232 AG 1.9329 0.0169 1807 0
TPM3--NTRK1 2037 30 2037.00 30.00 TPM3^ENSG00000143549.21 13389 chr1:154170400:- NTRK1^ENSG00000198400.13 42070 chr1:156874571:+ ONLY_REF_SPLICE YES 6561 80 0.32 25.53 GT 1.9329 AG 1.6895 6.9912 355 0
EML4--ALK 1810 9 1810.00 9.00 EML4^ENSG00000143924.19 17400 chr2:42295516:+ ALK^ENSG00000171094.18 59003 chr2:29223528:- ONLY_REF_SPLICE YES 2002 490 0.91 3.71 GT 1.6895 AG 1.9086 6.1523 1550 0
ETV6--NTRK3 756 18 756.00 17.93 ETV6^ENSG00000139083.11 11237 chr12:11869969:+ NTRK3^ENSG00000140538.16 46238 chr15:87940753:- ONLY_REF_SPLICE YES 3163 49 0.24 15.50 GT 1.7819 AG 1.9656 2.6176 1252 0
ETV6--NTRK3 3 18 3.00 0.07 ETV6^ENSG00000139083.11 11232 chr12:11869964:+ NTRK3^ENSG00000140538.16 46236 chr15:87940755:- INCL_NON_REF_SPLICE YES 3287 45 0.01 0.48 AG 1.9656 AC 1.9656 0.0103 1254 0
CCDC6--RET 743 12 743.00 12.00 CCDC6^ENSG00000108091.11 1435 chr10:59906122:- RET^ENSG00000165731.20 31587 chr10:43116584:+ ONLY_REF_SPLICE YES 3565 71 0.21 10.50 GT 1.8892 AG 1.8323 2.5536 2092 0
CCDC6--RET 1 1 1.00 0.00 CCDC6^ENSG00000108091.11 1435 chr10:59906122:- RET^ENSG00000165731.20 32735 chr10:43118373:+ ONLY_REF_SPLICE YES 3565 535 0.00 0.01 GT 1.8892 AG 1.7465 0.0034 1157 0
PTPN20--BMS1P7 388 0 388.00 0.00 PTPN20^ENSG00000204179.10 16907 chr10:46987555:+ BMS1P7^ENSG00000270025.2 23481 chr10:48060020:- INCL_NON_REF_SPLICE YES 148 0 2.61 389.00 GT 1.8892 AG 1.9899 1.3123 169 0
PTPN20--BMS1P7 159 0 159.00 0.00 PTPN20^ENSG00000204179.10 8386 chr10:46946675:+ BMS1P7^ENSG00000270025.2 23481 chr10:48060020:- INCL_NON_REF_SPLICE YES 853 0 0.19 160.00 GT 1.5628 AG 1.9899 0.5378 4980 0
PTPN20--BMS1P7 83 0 83.00 0.00 PTPN20^ENSG00000204179.10 11926 chr10:46965137:+ BMS1P7^ENSG00000270025.2 23481 chr10:48060020:- INCL_NON_REF_SPLICE YES 308 0 0.27 84.00 GT 1.8256 AG 1.9899 0.2807 4794 0
PTPN20--BMS1P7 17 0 17.00 0.00 PTPN20^ENSG00000204179.10 9666 chr10:46947955:+ BMS1P7^ENSG00000270025.2 23481 chr10:48060020:- INCL_NON_REF_SPLICE YES 673 0 0.03 18.00 GT 1.7465 AG 1.9899 0.0575 5431 0
PTPN20--BMS1P7 10 0 10.00 0.00 PTPN20^ENSG00000204179.10 15691 chr10:46984564:+ BMS1P7^ENSG00000270025.2 23481 chr10:48060020:- INCL_NON_REF_SPLICE YES 373 0 0.03 11.00 GT 1.8892 AG 1.9899 0.0338 1037 0
PTPN20--BMS1P7 8 0 8.00 0.00 PTPN20^ENSG00000204179.10 1106 chr10:46911501:+ BMS1P7^ENSG00000270025.2 23481 chr10:48060020:- INCL_NON_REF_SPLICE YES 254 0 0.04 9.00 GT 1.3996 AG 1.9899 0.0271 79 1
PTPN20--BMS1P7 5 0 5.00 0.00 PTPN20^ENSG00000204179.10 13017 chr10:46968047:+ BMS1P7^ENSG00000270025.2 23481 chr10:48060020:- INCL_NON_REF_SPLICE YES 274 0 0.02 6.00 GT 1.8892 AG 1.9899 0.0169 3704 0
PTPN20--BMS1P7 1 0 1.00 0.00 PTPN20^ENSG00000204179.10 8386 chr10:46946675:+ BMS1P7^ENSG00000270025.2 24571 chr10:48058930:- ONLY_REF_SPLICE YES 853 67 0.00 0.03 GT 1.5628 AG 1.9329 0.0034 4219 0
WAC--SFMBT2 346 5 346.00 4.99 WAC^ENSG00000095787.24 4265 chr10:28535757:+ SFMBT2^ENSG00000198879.12 35905 chr10:7285954:- ONLY_REF_SPLICE YES 1916 411 0.18 0.85 GT 1.3383 AG 1.7232 1.1872 693 0
WAC--SFMBT2 3 1 3.00 0.01 WAC^ENSG00000095787.24 4265 chr10:28535757:+ SFMBT2^ENSG00000198879.12 38956 chr10:7276989:- ONLY_REF_SPLICE NO 1916 590 0.00 0.01 GT 1.3383 AG 1.7819 0.0101 1214 0
WAC--SFMBT2 2 0 2.00 0.00 WAC^ENSG00000095787.24 4265 chr10:28535757:+ SFMBT2^ENSG00000198879.12 42304 chr10:7227937:- ONLY_REF_SPLICE YES 1916 436 0.00 0.01 GT 1.3383 AG 1.9329 0.0068 1138 0
WAC--SFMBT2 1 0 1.00 0.00 WAC^ENSG00000095787.24 4265 chr10:28535757:+ SFMBT2^ENSG00000198879.12 40054 chr10:7248649:- ONLY_REF_SPLICE YES 1916 610 0.00 0.00 GT 1.3383 AG 1.9899 0.0034 1103 0
PPL--SEC14L5 114 4 114.00 3.97 PPL^ENSG00000118898.16 10903 chr16:4895261:- SEC14L5^ENSG00000103184.12 28506 chr16:4987557:+ ONLY_REF_SPLICE YES 741 46 0.16 2.53 GT 1.6729 AG 1.9329 0.399 368 0
PPL--SEC14L5 4 1 4.00 0.03 PPL^ENSG00000118898.16 10903 chr16:4895261:- SEC14L5^ENSG00000103184.12 29098 chr16:4988149:+ ONLY_REF_SPLICE YES 741 157 0.01 0.04 GT 1.6729 AG 1.8892 0.0136 563 0
PEX3--AIG1 96 2 96.00 2.00 PEX3^ENSG00000034693.15 2443 chr6:143459216:+ AIG1^ENSG00000146416.19 27389 chr6:143333282:+ ONLY_REF_SPLICE YES 356 893 0.28 0.11 GT 1.9656 AG 1.6402 0.3315 2434 0
TLK2--AC240565.1 95 0 95.00 0.00 TLK2^ENSG00000146872.18 17137 chr17:62560126:+ AC240565.1^ENSG00000280136.2 41242 chr17:106864:- ONLY_REF_SPLICE YES 1028 61 0.09 1.55 GT 1.8892 AG 1.8892 0.3213 1734 0
TLK2--AC240565.1 1 0 1.00 0.00 TLK2^ENSG00000146872.18 14714 chr17:62552397:+ AC240565.1^ENSG00000280136.2 41242 chr17:106864:- ONLY_REF_SPLICE YES 1401 61 0.00 0.03 GT 1.5219 AG 1.8892 0.0034 1594 0
THAP12--ACO1 60 1 60.00 1.00 THAP12^ENSG00000137492.8 1385 chr11:76380748:- ACO1^ENSG00000122729.19 20094 chr9:32405485:+ ONLY_REF_SPLICE YES 1324 575 0.05 0.11 GT 1.7056 AG 1.9329 0.2063 2186 0
PCSK6--GOLGA8F 48 0 48.00 0.00 PCSK6^ENSG00000140479.18 2734 chr15:101489374:- GOLGA8F^ENSG00000153684.15 62596 chr15:28387602:+ ONLY_REF_SPLICE YES 505 0 0.10 49.00 GT 1.9656 AG 1.5329 0.1623 756 0
EFNA5--IKBKB 46 0 46.00 0.00 EFNA5^ENSG00000184349.14 1449 chr5:107670489:- IKBKB^ENSG00000104365.16 18065 chr8:42290156:+ ONLY_REF_SPLICE YES 1078 756 0.04 0.06 GT 1.5058 AG 1.6402 0.1556 2477 0
EFNA5--IKBKB 3 0 3.00 0.00 EFNA5^ENSG00000184349.14 1449 chr5:107670489:- IKBKB^ENSG00000104365.16 16970 chr8:42288634:+ ONLY_REF_SPLICE YES 1078 885 0.00 0.00 GT 1.5058 AG 1.7056 0.0101 1399 0
EFNA5--IKBKB 1 0 1.00 0.00 EFNA5^ENSG00000184349.14 1449 chr5:107670489:- IKBKB^ENSG00000104365.16 15623 chr8:42272083:+ ONLY_REF_SPLICE YES 1078 416 0.00 0.00 GT 1.5058 AG 1.9656 0.0034 324 0
DIS3L2--ALPP 40 0 40.00 0.00 DIS3L2^ENSG00000144535.20 16335 chr2:232210405:+ ALPP^ENSG00000163283.7 39266 chr2:232378971:+ ONLY_REF_SPLICE YES 330 397 0.12 0.10 GT 1.8892 AG 1.8323 0.1353 1453 0
ATG16L2--C11orf80 39 0 39.00 0.00 ATG16L2^ENSG00000168010.11 14594 chr11:72828508:+ C11orf80^ENSG00000173715.18 34922 chr11:66821643:+ ONLY_REF_SPLICE YES 346 591 0.12 0.07 GT 1.9086 AG 1.9219 0.1319 1004 0
ATG16L2--C11orf80 1 0 1.00 0.00 ATG16L2^ENSG00000168010.11 14594 chr11:72828508:+ C11orf80^ENSG00000173715.18 36954 chr11:66828266:+ ONLY_REF_SPLICE YES 346 785 0.01 0.00 GT 1.9086 AG 1.7819 0.0034 1074 0
KDM5C--AL592043.1 28 1 28.00 1.00 KDM5C^ENSG00000126012.12 11205 chrX:53210414:- AL592043.1^ENSG00000233571.1 27972 chrX:34206817:- ONLY_REF_SPLICE YES 1066 0 0.03 30.00 GT 1.9329 AG 1.9656 0.0981 2188 0
EFCAB2--AL359764.3 24 1 24.00 1.00 EFCAB2^ENSG00000203666.12 9604 chr1:245083688:+ AL359764.3^ENSG00000287738.1 26459 chr1:241465909:- ONLY_REF_SPLICE YES 69 1 0.37 13.00 GT 1.7465 AG 1.9899 0.0846 1392 0
R3HDM2--ANKS1B 17 0 17.00 0.00 R3HDM2^ENSG00000179912.20 1286 chr12:57430720:- ANKS1B^ENSG00000185046.18 32655 chr12:99825389:- ONLY_REF_SPLICE YES 59 270 0.30 0.07 GT 1.7819 AG 1.8323 0.0575 5808 0
AL391056.1--ATAD5 16 0 16.00 0.00 AL391056.1^ENSG00000227619.3 5982 chr9:129582768:+ ATAD5^ENSG00000176208.9 15120 chr17:30837206:+ ONLY_REF_SPLICE YES 0 480 17.00 0.04 GT 1.9329 AG 1.8295 0.0541 1935 0
AL359764.3--RGS7 13 0 13.00 0.00 AL359764.3^ENSG00000287738.1 3545 chr1:241465796:- RGS7^ENSG00000182901.17 12959 chr1:241098762:- ONLY_REF_SPLICE YES 1 64 7.00 0.22 GT 1.5058 AG 1.8892 0.044 2142 0
AL359764.3--RGS7 5 0 5.00 0.00 AL359764.3^ENSG00000287738.1 4717 chr1:241456532:- RGS7^ENSG00000182901.17 12959 chr1:241098762:- INCL_NON_REF_SPLICE YES 0 64 6.00 0.09 GT 1.7465 AG 1.8892 0.0169 970 0
AL359764.3--RGS7 1 0 1.00 0.00 AL359764.3^ENSG00000287738.1 3545 chr1:241465796:- RGS7^ENSG00000182901.17 15107 chr1:240936706:- ONLY_REF_SPLICE YES 1 113 1.00 0.02 GT 1.5058 AG 1.9329 0.0034 3010 0
CUL4B--TMEM255A 11 2 11.00 2.00 CUL4B^ENSG00000158290.19 20975 chrX:120542966:- TMEM255A^ENSG00000125355.16 62479 chrX:120294051:- ONLY_REF_SPLICE YES 826 143 0.02 0.10 GT 1.8892 AG 1.8256 0.044 2778 0
RTF1--NR2F2 9 0 9.00 0.00 RTF1^ENSG00000137815.14 2384 chr15:41417313:+ NR2F2^ENSG00000185551.15 29020 chr15:96334076:+ ONLY_REF_SPLICE YES 614 3238 0.02 0.00 GT 1.9086 AG 1.6729 0.0304 449 0
54 rows