File Info
- Filename
- SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_10.FusionInspector.fusions.abridged.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0005/A23LGNLLT4/nfcore_rnafusion__2cae617--20260515-145204/fusioninspector/SS_FFPE_V4_0001_RNA_0011_23LGNLLT4_10.FusionInspector.fusions.abridged.tsv
- Size
- 6.1 KB
- Workflow Run
- dev_rna_exp0005_2cae617
- Published
- May 16, 2026 6:26 AM
Content
View in new tab| #FusionName | JunctionReadCount | SpanningFragCount | est_J | est_S | LeftGene | LeftLocalBreakpoint | LeftBreakpoint | RightGene | RightLocalBreakpoint | RightBreakpoint | SpliceType | LargeAnchorSupport | NumCounterFusionLeft | NumCounterFusionRight | FAR_left | FAR_right | LeftBreakDinuc | LeftBreakEntropy | RightBreakDinuc | RightBreakEntropy | FFPM | microh_brkpt_dist | num_microh_near_brkpt |
| FGFR3--TACC3 | 4346 | 9 | 4346.00 | 8.97 | FGFR3^ENSG00000068078.20 | 9878 | chr4:1806934:+ | TACC3^ENSG00000013810.20 | 27590 | chr4:1739702:+ | ONLY_REF_SPLICE | YES | 67 | 3226 | 64.06 | 1.35 | GT | 1.8892 | AG | 1.7819 | 14.7711 | 627 | 0 |
| FGFR3--TACC3 | 6 | 9 | 6.00 | 0.01 | FGFR3^ENSG00000068078.20 | 9880 | chr4:1806936:+ | TACC3^ENSG00000013810.20 | 27593 | chr4:1739705:+ | INCL_NON_REF_SPLICE | YES | 19 | 3264 | 0.80 | 0.00 | GA | 1.8892 | TA | 1.5219 | 0.0204 | 623 | 0 |
| FGFR3--TACC3 | 6 | 8 | 6.00 | 0.01 | FGFR3^ENSG00000068078.20 | 9872 | chr4:1806928:+ | TACC3^ENSG00000013810.20 | 27586 | chr4:1739698:+ | INCL_NON_REF_SPLICE | YES | 195 | 3151 | 0.08 | 0.00 | AC | 1.8892 | GA | 1.7819 | 0.0204 | 633 | 0 |
| FGFR3--TACC3 | 3 | 9 | 3.00 | 0.01 | FGFR3^ENSG00000068078.20 | 9878 | chr4:1806934:+ | TACC3^ENSG00000013810.20 | 22063 | chr4:1730798:+ | INCL_NON_REF_SPLICE | NO | 67 | 3012 | 0.19 | 0.00 | GT | 1.8892 | AG | 1.6895 | 0.0102 | 1411 | 0 |
| FGFR3--TACC3 | 3 | 0 | 3.00 | 0.00 | FGFR3^ENSG00000068078.20 | 9559 | chr4:1806615:+ | TACC3^ENSG00000013810.20 | 27635 | chr4:1739747:+ | INCL_NON_REF_SPLICE | YES | 1435 | 3387 | 0.00 | 0.00 | GA | 1.7465 | GT | 1.7465 | 0.0102 | 498 | 0 |
| TMPRSS2--ERG | 3555 | 0 | 3555.00 | 0.00 | TMPRSS2^ENSG00000184012.14 | 4652 | chr21:41508081:- | ERG^ENSG00000157554.19 | 28751 | chr21:38584945:- | ONLY_REF_SPLICE | YES | 1 | 78 | 1778.00 | 45.01 | GT | 1.6895 | AG | 1.9219 | 12.0578 | 1104 | 0 |
| ETV6--NTRK3 | 1202 | 5 | 1202.00 | 4.99 | ETV6^ENSG00000139083.11 | 11237 | chr12:11869969:+ | NTRK3^ENSG00000140538.16 | 46238 | chr15:87940753:- | ONLY_REF_SPLICE | YES | 3245 | 18 | 0.37 | 63.58 | GT | 1.7819 | AG | 1.9656 | 4.0938 | 1252 | 0 |
| ETV6--NTRK3 | 4 | 4 | 4.00 | 0.01 | ETV6^ENSG00000139083.11 | 11237 | chr12:11869969:+ | NTRK3^ENSG00000140538.16 | 46240 | chr15:87940751:- | INCL_NON_REF_SPLICE | YES | 3245 | 18 | 0.00 | 0.47 | GT | 1.7819 | AT | 1.9656 | 0.0136 | 1250 | 0 |
| FGFR3--BAIAP2L1 | 1190 | 3 | 1190.00 | 3.00 | FGFR3^ENSG00000068078.20 | 9878 | chr4:1806934:+ | BAIAP2L1^ENSG00000006453.14 | 16927 | chr7:98362432:- | ONLY_REF_SPLICE | YES | 67 | 41 | 17.56 | 28.43 | GT | 1.8892 | AG | 1.8062 | 4.0464 | 1171 | 0 |
| TPM3--NTRK1 | 1133 | 2 | 1133.00 | 2.00 | TPM3^ENSG00000143549.21 | 13389 | chr1:154170400:- | NTRK1^ENSG00000198400.13 | 42070 | chr1:156874571:+ | ONLY_REF_SPLICE | YES | 8067 | 42 | 0.14 | 26.42 | GT | 1.9329 | AG | 1.6895 | 3.8497 | 355 | 0 |
| LMNA--NTRK1 | 1124 | 8 | 1124.00 | 8.00 | LMNA^ENSG00000160789.23 | 17733 | chr1:156130773:+ | NTRK1^ENSG00000198400.13 | 40289 | chr1:156874906:+ | ONLY_REF_SPLICE | YES | 3854 | 268 | 0.29 | 4.21 | GT | 1.7465 | AG | 1.5058 | 3.8395 | 947 | 0 |
| NCOA4--RET | 912 | 3 | 912.00 | 3.00 | NCOA4^ENSG00000266412.6 | 9075 | chr10:46012883:- | RET^ENSG00000165731.20 | 30127 | chr10:43116584:+ | ONLY_REF_SPLICE | YES | 3069 | 458 | 0.30 | 2.00 | GT | 1.9086 | AG | 1.8323 | 3.1035 | 5144 | 0 |
| KIF5B--RET | 813 | 9 | 813.00 | 8.94 | KIF5B^ENSG00000170759.11 | 19977 | chr10:32017143:- | RET^ENSG00000165731.20 | 38832 | chr10:43114480:+ | ONLY_REF_SPLICE | YES | 1824 | 22 | 0.45 | 35.78 | GT | 1.9656 | AG | 1.9656 | 2.7878 | 3178 | 0 |
| KIF5B--RET | 6 | 8 | 6.00 | 0.06 | KIF5B^ENSG00000170759.11 | 19979 | chr10:32017141:- | RET^ENSG00000165731.20 | 38836 | chr10:43114484:+ | INCL_NON_REF_SPLICE | YES | 1824 | 30 | 0.01 | 0.48 | TA | 1.9656 | CC | 1.9656 | 0.0206 | 3175 | 0 |
| CCDC6--RET | 731 | 4 | 731.00 | 4.00 | CCDC6^ENSG00000108091.11 | 1435 | chr10:59906122:- | RET^ENSG00000165731.20 | 31587 | chr10:43116584:+ | ONLY_REF_SPLICE | YES | 2326 | 458 | 0.32 | 1.60 | GT | 1.8892 | AG | 1.8323 | 2.493 | 2092 | 0 |
| EML4--ALK | 702 | 0 | 702.00 | 0.00 | EML4^ENSG00000143924.19 | 17400 | chr2:42295516:+ | ALK^ENSG00000171094.18 | 59003 | chr2:29223528:- | ONLY_REF_SPLICE | YES | 901 | 51 | 0.78 | 13.52 | GT | 1.6895 | AG | 1.9086 | 2.381 | 1550 | 0 |
| EML4--ALK | 5 | 0 | 5.00 | 0.00 | EML4^ENSG00000143924.19 | 17399 | chr2:42295515:+ | ALK^ENSG00000171094.18 | 59004 | chr2:29223527:- | INCL_NON_REF_SPLICE | YES | 912 | 52 | 0.01 | 0.11 | GG | 1.6895 | GT | 1.8256 | 0.017 | 1552 | 0 |
| CD74--ROS1 | 691 | 9 | 691.00 | 9.00 | CD74^ENSG00000019582.16 | 4990 | chr5:150404680:- | ROS1^ENSG00000047936.11 | 48731 | chr6:117324415:- | ONLY_REF_SPLICE | YES | 22333 | 42 | 0.03 | 16.30 | GT | 1.7819 | AG | 1.7465 | 2.3742 | 2407 | 0 |
| CD74--ROS1 | 3 | 1 | 3.00 | 0.00 | CD74^ENSG00000019582.16 | 4992 | chr5:150404678:- | ROS1^ENSG00000047936.11 | 48735 | chr6:117324411:- | INCL_NON_REF_SPLICE | YES | 22344 | 67 | 0.00 | 0.07 | AC | 1.9329 | GA | 1.8892 | 0.0102 | 2407 | 0 |
| SLC34A2--ROS1 | 587 | 11 | 587.00 | 10.97 | SLC34A2^ENSG00000157765.13 | 6084 | chr4:25664330:+ | ROS1^ENSG00000047936.11 | 58025 | chr6:117324415:- | ONLY_REF_SPLICE | YES | 0 | 41 | 599.00 | 14.26 | GT | 1.8892 | AG | 1.7465 | 2.0282 | 999 | 0 |
| SLC34A2--ROS1 | 3 | 5 | 3.00 | 0.03 | SLC34A2^ENSG00000157765.13 | 6088 | chr4:25664334:+ | ROS1^ENSG00000047936.11 | 58031 | chr6:117324409:- | INCL_NON_REF_SPLICE | YES | 0 | 75 | 9.00 | 0.12 | GA | 1.7465 | TT | 1.8892 | 0.0103 | 1005 | 0 |
| TFG--NTRK1 | 471 | 1 | 471.00 | 1.00 | TFG^ENSG00000114354.15 | 9135 | chr3:100732672:+ | NTRK1^ENSG00000198400.13 | 37655 | chr1:156874571:+ | ONLY_REF_SPLICE | YES | 2600 | 42 | 0.18 | 11.00 | GT | 1.9329 | AG | 1.6895 | 1.6009 | 883 | 0 |
| PAX8--PPARG | 451 | 1 | 451.00 | 0.99 | PAX8^ENSG00000125618.18 | 9714 | chr2:113235394:- | PPARG^ENSG00000132170.23 | 31404 | chr3:12379704:+ | ONLY_REF_SPLICE | YES | 97 | 14 | 4.62 | 30.20 | GT | 1.8295 | AG | 1.9329 | 1.5331 | 1923 | 0 |
| PAX8--PPARG | 3 | 1 | 3.00 | 0.01 | PAX8^ENSG00000125618.18 | 9710 | chr2:113235398:- | PPARG^ENSG00000132170.23 | 31399 | chr3:12379699:+ | INCL_NON_REF_SPLICE | YES | 107 | 10 | 0.05 | 0.45 | TC | 1.6402 | CT | 1.8892 | 0.0102 | 1927 | 0 |
| EGFR--SEPTIN14 | 382 | 2 | 382.00 | 2.00 | EGFR^ENSG00000146648.19 | 30734 | chr7:55200413:+ | SEPTIN14^ENSG00000154997.9 | 54769 | chr7:55796092:- | ONLY_REF_SPLICE | YES | 14 | 33 | 25.67 | 11.32 | GT | 1.8892 | AG | 1.9899 | 1.3025 | 658 | 0 |
| SLC45A3--BRAF | 380 | 0 | 380.00 | 0.00 | SLC45A3^ENSG00000158715.6 | 1116 | chr1:205680394:- | BRAF^ENSG00000157764.14 | 25172 | chr7:140794467:- | ONLY_REF_SPLICE | YES | 0 | 1766 | 381.00 | 0.22 | GT | 1.5628 | AG | 1.7465 | 1.2889 | 2599 | 0 |
| STX16--NPEPL1 | 170 | 3 | 170.00 | 3.00 | STX16^ENSG00000124222.22 | 8855 | chr20:58673711:+ | NPEPL1^ENSG00000215440.12 | 17277 | chr20:58691724:+ | ONLY_REF_SPLICE | YES | 1313 | 199 | 0.13 | 0.87 | GT | 1.7968 | AG | 1.8256 | 0.5868 | 1940 | 0 |
| STX16--NPEPL1 | 6 | 0 | 6.00 | 0.00 | STX16^ENSG00000124222.22 | 7774 | chr20:58671297:+ | NPEPL1^ENSG00000215440.12 | 17277 | chr20:58691724:+ | ONLY_REF_SPLICE | YES | 1268 | 199 | 0.01 | 0.04 | GT | 1.8062 | AG | 1.8256 | 0.0204 | 2729 | 0 |
| STX16--NPEPL1 | 1 | 0 | 1.00 | 0.00 | STX16^ENSG00000124222.22 | 1835 | chr20:58652087:+ | NPEPL1^ENSG00000215440.12 | 17277 | chr20:58691724:+ | ONLY_REF_SPLICE | YES | 2100 | 199 | 0.00 | 0.01 | GT | 1.9899 | AG | 1.8256 | 0.0034 | 1258 | 0 |
| TLK2--AC240565.1 | 63 | 0 | 63.00 | 0.00 | TLK2^ENSG00000146872.18 | 17137 | chr17:62560126:+ | AC240565.1^ENSG00000280136.2 | 41242 | chr17:106864:- | ONLY_REF_SPLICE | YES | 570 | 33 | 0.11 | 1.88 | GT | 1.8892 | AG | 1.8892 | 0.2137 | 1734 | 0 |
31 rows