#FusionName	JunctionReadCount	SpanningFragCount	est_J	est_S	LeftGene	LeftLocalBreakpoint	LeftBreakpoint	RightGene	RightLocalBreakpoint	RightBreakpoint	SpliceType	LargeAnchorSupport	NumCounterFusionLeft	NumCounterFusionRight	FAR_left	FAR_right	LeftBreakDinuc	LeftBreakEntropy	RightBreakDinuc	RightBreakEntropy	FFPM	microh_brkpt_dist	num_microh_near_brkpt
FGFR3--TACC3	4337	8	4337.00	7.98	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	TACC3^ENSG00000013810.20	27590	chr4:1739702:+	ONLY_REF_SPLICE	YES	96	3206	44.80	1.36	GT	1.8892	AG	1.7819	14.7541	627	0
FGFR3--TACC3	6	8	6.00	0.01	FGFR3^ENSG00000068078.20	9880	chr4:1806936:+	TACC3^ENSG00000013810.20	27593	chr4:1739705:+	INCL_NON_REF_SPLICE	YES	29	3286	0.50	0.00	GA	1.8892	TA	1.5219	0.0204	623	0
FGFR3--TACC3	4	8	4.00	0.01	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	TACC3^ENSG00000013810.20	22063	chr4:1730798:+	INCL_NON_REF_SPLICE	NO	96	2889	0.13	0.00	GT	1.8892	AG	1.6895	0.0136	1411	0
FGFR3--TACC3	3	0	3.00	0.00	FGFR3^ENSG00000068078.20	9097	chr4:1806153:+	TACC3^ENSG00000013810.20	27645	chr4:1739757:+	INCL_NON_REF_SPLICE	YES	480	3477	0.01	0.00	AC	1.8892	CC	1.7819	0.0102	129	0
TMPRSS2--ERG	3858	0	3858.00	0.00	TMPRSS2^ENSG00000184012.14	4652	chr21:41508081:-	ERG^ENSG00000157554.19	28751	chr21:38584945:-	ONLY_REF_SPLICE	YES	8	72	428.78	52.86	GT	1.6895	AG	1.9219	13.1005	1104	0
FGFR3--BAIAP2L1	1263	3	1263.00	3.00	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	BAIAP2L1^ENSG00000006453.14	16927	chr7:98362432:-	ONLY_REF_SPLICE	YES	98	55	12.80	22.62	GT	1.8892	AG	1.8062	4.2989	1171	0
ETV6--NTRK3	1183	6	1183.00	5.98	ETV6^ENSG00000139083.11	11237	chr12:11869969:+	NTRK3^ENSG00000140538.16	46238	chr15:87940753:-	ONLY_REF_SPLICE	YES	3011	15	0.40	74.38	GT	1.7819	AG	1.9656	4.0374	1252	0
ETV6--NTRK3	6	4	6.00	0.02	ETV6^ENSG00000139083.11	11230	chr12:11869962:+	NTRK3^ENSG00000140538.16	46232	chr15:87940759:-	INCL_NON_REF_SPLICE	YES	3129	1	0.00	5.50	AT	1.9656	TC	1.9899	0.0205	1258	0
LMNA--NTRK1	1171	5	1171.00	4.99	LMNA^ENSG00000160789.23	17733	chr1:156130773:+	NTRK1^ENSG00000198400.13	40289	chr1:156874906:+	ONLY_REF_SPLICE	YES	3737	307	0.31	3.82	GT	1.7465	AG	1.5058	3.9932	947	0
LMNA--NTRK1	5	0	5.00	0.00	LMNA^ENSG00000160789.23	12545	chr1:156115077:+	NTRK1^ENSG00000198400.13	40366	chr1:156874983:+	INCL_NON_REF_SPLICE	YES	3336	855	0.00	0.01	AC	1.8892	GG	1.7968	0.017	554	0
LMNA--NTRK1	3	4	3.00	0.01	LMNA^ENSG00000160789.23	17734	chr1:156130774:+	NTRK1^ENSG00000198400.13	40292	chr1:156874909:+	INCL_NON_REF_SPLICE	NO	3737	338	0.00	0.02	TG	1.7465	TC	1.4566	0.0102	949	0
NCOA4--RET	1029	2	1029.00	2.00	NCOA4^ENSG00000266412.6	9075	chr10:46012883:-	RET^ENSG00000165731.20	30127	chr10:43116584:+	ONLY_REF_SPLICE	YES	2845	478	0.36	2.15	GT	1.9086	AG	1.8323	3.5009	5144	0
TPM3--NTRK1	1028	1	1028.00	1.00	TPM3^ENSG00000143549.21	13389	chr1:154170400:-	NTRK1^ENSG00000198400.13	42070	chr1:156874571:+	ONLY_REF_SPLICE	YES	7572	34	0.14	29.43	GT	1.9329	AG	1.6895	3.4941	355	0
KIF5B--RET	787	6	787.00	5.97	KIF5B^ENSG00000170759.11	19977	chr10:32017143:-	RET^ENSG00000165731.20	38832	chr10:43114480:+	ONLY_REF_SPLICE	YES	1633	16	0.49	46.71	GT	1.9656	AG	1.9656	2.6927	3178	0
KIF5B--RET	4	6	4.00	0.03	KIF5B^ENSG00000170759.11	19980	chr10:32017140:-	RET^ENSG00000165731.20	38836	chr10:43114484:+	INCL_NON_REF_SPLICE	YES	1631	27	0.01	0.39	AG	1.9656	CC	1.9656	0.0137	3174	0
CD74--ROS1	748	5	748.00	4.95	CD74^ENSG00000019582.16	4990	chr5:150404680:-	ROS1^ENSG00000047936.11	48731	chr6:117324415:-	ONLY_REF_SPLICE	YES	23206	42	0.03	17.53	GT	1.7819	AG	1.7465	2.5568	2407	0
CD74--ROS1	7	5	7.00	0.05	CD74^ENSG00000019582.16	4992	chr5:150404678:-	ROS1^ENSG00000047936.11	48732	chr6:117324414:-	INCL_NON_REF_SPLICE	YES	23214	46	0.00	0.28	AC	1.9329	GA	1.8295	0.024	2408	0
EML4--ALK	721	0	721.00	0.00	EML4^ENSG00000143924.19	17400	chr2:42295516:+	ALK^ENSG00000171094.18	59003	chr2:29223528:-	ONLY_REF_SPLICE	YES	779	53	0.93	13.37	GT	1.6895	AG	1.9086	2.4483	1550	0
CCDC6--RET	680	2	680.00	2.00	CCDC6^ENSG00000108091.11	1435	chr10:59906122:-	RET^ENSG00000165731.20	31587	chr10:43116584:+	ONLY_REF_SPLICE	YES	2276	478	0.30	1.43	GT	1.8892	AG	1.8323	2.3159	2092	0
SLC34A2--ROS1	535	9	535.00	9.00	SLC34A2^ENSG00000157765.13	6084	chr4:25664330:+	ROS1^ENSG00000047936.11	58025	chr6:117324415:-	ONLY_REF_SPLICE	YES	1	42	272.50	12.67	GT	1.8892	AG	1.7465	1.8473	999	0
SLC34A2--ROS1	3	0	3.00	0.00	SLC34A2^ENSG00000157765.13	4925	chr4:25662812:+	ROS1^ENSG00000047936.11	60312	chr6:117319963:-	INCL_NON_REF_SPLICE	YES	611	1341	0.01	0.00	CT	1.7968	GT	1.9086	0.0102	1153	0
SLC45A3--BRAF	460	0	460.00	0.00	SLC45A3^ENSG00000158715.6	1116	chr1:205680394:-	BRAF^ENSG00000157764.14	25172	chr7:140794467:-	ONLY_REF_SPLICE	YES	0	1689	461.00	0.27	GT	1.5628	AG	1.7465	1.562	2599	0
PAX8--PPARG	431	3	431.00	3.00	PAX8^ENSG00000125618.18	9714	chr2:113235394:-	PPARG^ENSG00000132170.23	31404	chr3:12379704:+	ONLY_REF_SPLICE	YES	128	18	3.37	22.89	GT	1.8295	AG	1.9329	1.4737	1923	0
EGFR--SEPTIN14	368	1	368.00	1.00	EGFR^ENSG00000146648.19	30734	chr7:55200413:+	SEPTIN14^ENSG00000154997.9	54769	chr7:55796092:-	ONLY_REF_SPLICE	YES	7	37	46.25	9.74	GT	1.8892	AG	1.9899	1.253	658	0
TFG--NTRK1	363	1	363.00	1.00	TFG^ENSG00000114354.15	9135	chr3:100732672:+	NTRK1^ENSG00000198400.13	37655	chr1:156874571:+	ONLY_REF_SPLICE	YES	2153	34	0.17	10.43	GT	1.9329	AG	1.6895	1.236	883	0
STX16--NPEPL1	139	2	139.00	1.97	STX16^ENSG00000124222.22	8855	chr20:58673711:+	NPEPL1^ENSG00000215440.12	17277	chr20:58691724:+	ONLY_REF_SPLICE	YES	1125	177	0.13	0.80	GT	1.7968	AG	1.8256	0.4787	1940	0
STX16--NPEPL1	4	1	4.00	0.03	STX16^ENSG00000124222.22	7774	chr20:58671297:+	NPEPL1^ENSG00000215440.12	17277	chr20:58691724:+	ONLY_REF_SPLICE	YES	1165	177	0.01	0.03	GT	1.8062	AG	1.8256	0.0137	2729	0
STX16--NPEPL1	1	0	1.00	0.00	STX16^ENSG00000124222.22	1835	chr20:58652087:+	NPEPL1^ENSG00000215440.12	17277	chr20:58691724:+	ONLY_REF_SPLICE	YES	2098	177	0.00	0.01	GT	1.9899	AG	1.8256	0.0034	1258	0
TLK2--FAM157A	45	0	45.00	0.00	TLK2^ENSG00000146872.18	17137	chr17:62560126:+	FAM157A^ENSG00000236438.7	45187	chr3:198180755:+	ONLY_REF_SPLICE	YES	578	39	0.08	1.15	GT	1.8892	AG	1.8892	0.1528	2733	0
BX571818.1--TMEM200A	23	0	23.00	0.00	BX571818.1^ENSG00000285417.1	5765	chr1:206053265:+	TMEM200A^ENSG00000164484.12	19910	chr6:130440407:+	ONLY_REF_SPLICE	YES	228	131	0.10	0.18	GT	1.9656	AG	1.7465	0.0781	1493	0