#FusionName	JunctionReadCount	SpanningFragCount	est_J	est_S	LeftGene	LeftLocalBreakpoint	LeftBreakpoint	RightGene	RightLocalBreakpoint	RightBreakpoint	SpliceType	LargeAnchorSupport	NumCounterFusionLeft	NumCounterFusionRight	FAR_left	FAR_right	LeftBreakDinuc	LeftBreakEntropy	RightBreakDinuc	RightBreakEntropy	FFPM	microh_brkpt_dist	num_microh_near_brkpt
FGFR3--TACC3	6503	13	6503.00	12.97	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	TACC3^ENSG00000013810.20	27590	chr4:1739702:+	ONLY_REF_SPLICE	YES	93	3525	69.33	1.85	GT	1.8892	AG	1.7819	22.0827	627	0
FGFR3--TACC3	9	13	9.00	0.02	FGFR3^ENSG00000068078.20	9880	chr4:1806936:+	TACC3^ENSG00000013810.20	27591	chr4:1739703:+	INCL_NON_REF_SPLICE	YES	20	3576	1.10	0.01	GA	1.8892	GG	1.7819	0.0306	625	0
FGFR3--TACC3	4	10	4.00	0.01	FGFR3^ENSG00000068078.20	9872	chr4:1806928:+	TACC3^ENSG00000013810.20	27587	chr4:1739699:+	INCL_NON_REF_SPLICE	YES	299	3460	0.05	0.00	AC	1.8892	AG	1.7819	0.0136	633	0
FGFR3--TACC3	3	13	3.00	0.01	FGFR3^ENSG00000068078.20	9885	chr4:1806941:+	TACC3^ENSG00000013810.20	27598	chr4:1739710:+	INCL_NON_REF_SPLICE	YES	20	3759	0.81	0.00	CT	1.9086	GC	1.4295	0.0102	617	0
FGFR3--TACC3	3	3	3.00	0.00	FGFR3^ENSG00000068078.20	9831	chr4:1806887:+	TACC3^ENSG00000013810.20	27618	chr4:1739730:+	INCL_NON_REF_SPLICE	YES	509	3671	0.01	0.00	AG	1.8295	GG	1.7968	0.0102	628	0
TMPRSS2--ERG	5908	0	5908.00	0.00	TMPRSS2^ENSG00000184012.14	4652	chr21:41508081:-	ERG^ENSG00000157554.19	28751	chr21:38584945:-	ONLY_REF_SPLICE	YES	4	96	1181.80	60.92	GT	1.6895	AG	1.9219	20.0222	1104	0
FGFR3--BAIAP2L1	2026	7	2026.00	7.00	FGFR3^ENSG00000068078.20	9878	chr4:1806934:+	BAIAP2L1^ENSG00000006453.14	16927	chr7:98362432:-	ONLY_REF_SPLICE	YES	95	67	21.19	29.91	GT	1.8892	AG	1.8062	6.8898	1171	0
ETV6--NTRK3	1905	3	1905.00	3.00	ETV6^ENSG00000139083.11	11237	chr12:11869969:+	NTRK3^ENSG00000140538.16	46238	chr15:87940753:-	ONLY_REF_SPLICE	YES	3561	23	0.54	79.54	GT	1.7819	AG	1.9656	6.4663	1252	0
ETV6--NTRK3	1	0	1.00	0.00	ETV6^ENSG00000139083.11	9691	chr12:11853561:+	NTRK3^ENSG00000140538.16	40814	chr15:88033045:-	ONLY_REF_SPLICE	YES	2071	0	0.00	2.00	GT	1.6402	AG	1.8256	0.0034	1246	0
LMNA--NTRK1	1637	9	1637.00	8.97	LMNA^ENSG00000160789.23	17733	chr1:156130773:+	NTRK1^ENSG00000198400.13	40289	chr1:156874906:+	ONLY_REF_SPLICE	YES	4894	441	0.34	3.73	GT	1.7465	AG	1.5058	5.5782	947	0
LMNA--NTRK1	5	9	5.00	0.03	LMNA^ENSG00000160789.23	17734	chr1:156130774:+	NTRK1^ENSG00000198400.13	40292	chr1:156874909:+	INCL_NON_REF_SPLICE	YES	4893	497	0.00	0.03	TG	1.7465	TC	1.4566	0.017	949	0
TPM3--NTRK1	1589	4	1589.00	4.00	TPM3^ENSG00000143549.21	13389	chr1:154170400:-	NTRK1^ENSG00000198400.13	42070	chr1:156874571:+	ONLY_REF_SPLICE	YES	8293	40	0.19	38.88	GT	1.9329	AG	1.6895	5.3987	355	0
NCOA4--RET	1410	4	1410.00	3.99	NCOA4^ENSG00000266412.6	9075	chr10:46012883:-	RET^ENSG00000165731.20	30127	chr10:43116584:+	ONLY_REF_SPLICE	YES	3471	687	0.41	2.06	GT	1.9086	AG	1.8323	4.792	5144	0
NCOA4--RET	3	4	3.00	0.01	NCOA4^ENSG00000266412.6	9075	chr10:46012883:-	RET^ENSG00000165731.20	30130	chr10:43116587:+	INCL_NON_REF_SPLICE	YES	3471	735	0.00	0.01	GT	1.9086	AG	1.8323	0.0102	5141	0
KIF5B--RET	1258	8	1258.00	7.98	KIF5B^ENSG00000170759.11	19977	chr10:32017143:-	RET^ENSG00000165731.20	38832	chr10:43114480:+	ONLY_REF_SPLICE	YES	1922	23	0.66	52.79	GT	1.9656	AG	1.9656	4.2904	3178	0
KIF5B--RET	3	8	3.00	0.02	KIF5B^ENSG00000170759.11	19975	chr10:32017145:-	RET^ENSG00000165731.20	38831	chr10:43114479:+	INCL_NON_REF_SPLICE	NO	1944	2	0.01	4.00	TG	1.9899	CA	1.9656	0.0103	3181	0
CCDC6--RET	1092	6	1092.00	6.00	CCDC6^ENSG00000108091.11	1435	chr10:59906122:-	RET^ENSG00000165731.20	31587	chr10:43116584:+	ONLY_REF_SPLICE	YES	2573	687	0.43	1.60	GT	1.8892	AG	1.8323	3.7211	2092	0
EML4--ALK	977	1	977.00	1.00	EML4^ENSG00000143924.19	17400	chr2:42295516:+	ALK^ENSG00000171094.18	59003	chr2:29223528:-	ONLY_REF_SPLICE	YES	965	59	1.01	16.32	GT	1.6895	AG	1.9086	3.3145	1550	0
CD74--ROS1	901	10	901.00	9.96	CD74^ENSG00000019582.16	4990	chr5:150404680:-	ROS1^ENSG00000047936.11	48731	chr6:117324415:-	ONLY_REF_SPLICE	YES	23958	52	0.04	17.21	GT	1.7819	AG	1.7465	3.0873	2407	0
CD74--ROS1	4	10	4.00	0.04	CD74^ENSG00000019582.16	4992	chr5:150404678:-	ROS1^ENSG00000047936.11	48732	chr6:117324414:-	INCL_NON_REF_SPLICE	YES	23969	57	0.00	0.26	AC	1.9329	GA	1.8295	0.0137	2408	0
SLC34A2--ROS1	751	22	751.00	21.89	SLC34A2^ENSG00000157765.13	6084	chr4:25664330:+	ROS1^ENSG00000047936.11	58025	chr6:117324415:-	ONLY_REF_SPLICE	YES	0	51	774.00	14.88	GT	1.8892	AG	1.7465	2.6193	999	0
SLC34A2--ROS1	5	17	5.00	0.11	SLC34A2^ENSG00000157765.13	6088	chr4:25664334:+	ROS1^ENSG00000047936.11	58028	chr6:117324412:-	INCL_NON_REF_SPLICE	YES	0	91	23.00	0.25	GA	1.7465	TG	1.8892	0.0173	1002	0
PAX8--PPARG	711	0	711.00	0.00	PAX8^ENSG00000125618.18	9714	chr2:113235394:-	PPARG^ENSG00000132170.23	31404	chr3:12379704:+	ONLY_REF_SPLICE	YES	124	15	5.70	44.50	GT	1.8295	AG	1.9329	2.4096	1923	0
PAX8--PPARG	5	0	5.00	0.00	PAX8^ENSG00000125618.18	9681	chr2:113235427:-	PPARG^ENSG00000132170.23	31573	chr3:12379873:+	INCL_NON_REF_SPLICE	YES	143	110	0.04	0.05	AC	1.8256	AC	1.8295	0.0169	1959	0
SLC45A3--BRAF	705	0	705.00	0.00	SLC45A3^ENSG00000158715.6	1116	chr1:205680394:-	BRAF^ENSG00000157764.14	25172	chr7:140794467:-	ONLY_REF_SPLICE	YES	0	1833	706.00	0.38	GT	1.5628	AG	1.7465	2.3892	2599	0
TFG--NTRK1	662	3	662.00	3.00	TFG^ENSG00000114354.15	9135	chr3:100732672:+	NTRK1^ENSG00000198400.13	37655	chr1:156874571:+	ONLY_REF_SPLICE	YES	2780	40	0.24	16.24	GT	1.9329	AG	1.6895	2.2537	883	0
EGFR--SEPTIN14	506	4	506.00	4.00	EGFR^ENSG00000146648.19	30734	chr7:55200413:+	SEPTIN14^ENSG00000154997.9	54769	chr7:55796092:-	ONLY_REF_SPLICE	YES	16	33	30.06	15.03	GT	1.8892	AG	1.9899	1.7284	658	0
STX16--NPEPL1	168	1	168.00	1.00	STX16^ENSG00000124222.22	8855	chr20:58673711:+	NPEPL1^ENSG00000215440.12	17277	chr20:58691724:+	ONLY_REF_SPLICE	YES	1191	179	0.14	0.94	GT	1.7968	AG	1.8256	0.5728	1940	0
STX16--NPEPL1	6	0	6.00	0.00	STX16^ENSG00000124222.22	7774	chr20:58671297:+	NPEPL1^ENSG00000215440.12	17277	chr20:58691724:+	ONLY_REF_SPLICE	YES	1206	179	0.01	0.04	GT	1.8062	AG	1.8256	0.0203	2729	0
STX16--NPEPL1	2	0	2.00	0.00	STX16^ENSG00000124222.22	1835	chr20:58652087:+	NPEPL1^ENSG00000215440.12	17277	chr20:58691724:+	ONLY_REF_SPLICE	YES	2253	179	0.00	0.02	GT	1.9899	AG	1.8256	0.0068	1258	0
STX16--NPEPL1	1	0	1.00	0.00	STX16^ENSG00000124222.22	8855	chr20:58673711:+	NPEPL1^ENSG00000215440.12	19290	chr20:58693737:+	ONLY_REF_SPLICE	YES	1191	1280	0.00	0.00	GT	1.7968	AG	1.7819	0.0034	1248	0
TLK2--AC240565.1	43	0	43.00	0.00	TLK2^ENSG00000146872.18	17137	chr17:62560126:+	AC240565.1^ENSG00000280136.2	41242	chr17:106864:-	ONLY_REF_SPLICE	YES	593	19	0.07	2.20	GT	1.8892	AG	1.8892	0.1457	1734	0