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multiqc_general_stats_controls.tsv
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s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0005/A23LGNLLT4/nfcore_rnafusion__2cae617--20260515-145204/QC/multiqc/multiqc_data/multiqc_general_stats_controls.tsv
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dev_rna_exp0005_2cae617
Published
May 16, 2026 7:30 AM

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sample_id FRAGMENT_LENGTH_MEAN FRAGMENT_LENGTH_MEDIAN PCT_MITO_EST_COUNTS PCT_RIBO_EST_COUNTS PCT_HK_EST_COUNTS PCT_MALE_EST_COUNTS MITOCHONDRIAL_CONTAMINATION RIBOSOMAL_CONTAMINATION PCT_HK_TPM PCT_MALE_TPM TOTAL_READS EXPECTED_DISTINCT READS FRAC_UNMAPPED FRAC_DUPES UNIQUE_READS FRAC_READS_ON_TARGET FRAC_PAIRS_ON_TARGET FRAC_READS_OFF_TARGET FRAC_PAIRS_OFF_TARGET READS_ON_TARGET PAIRS_ON_TARGET READS_OFF_TARGET PAIRS_OFF_TARGET MEAN_DEPTH Q50_DEPTH FRAC_BASES_GT30X FRAC_BASES_GT100X N_Q30 GC_BIAS IS_CONTAMINATED CONTAMINATION_PCT SUMMED_MEDIAN SUMMED_MEAN PERCENT_DUPLICATION PCT_RIBOSOMAL_BASES PCT_MRNA_BASES PROPER_PAIRS_PERCENT UNIQUELY_MAPPED_PERCENT MAPPED_READS PCT_DUPLICATION AFTER_FILTERING_Q30_RATE AFTER_FILTERING_Q30_BASES FILTERING_RESULT_PASSED_FILTER_READS AFTER_FILTERING_GC_CONTENT PCT_SURVIVING PCT_ADAPTER FRAGMENT_LENGTH PERCENT_ALIGNED PSEUDOALIGNED_READS PERCENT_DUPLICATES PERCENT_GC AVG_SEQUENCE_LENGTH MEDIAN_SEQUENCE_LENGTH PERCENT_FAILS TOTAL_SEQUENCES
FFPE_HD789_01_RNA_0002_23LGNLLT4_1 161.4 146.0 0.1 0.83 0.43 0.0 0.22 2.44 0.63 0.0 9999000000.0 652848500.0 592146872.0 0.004692 0.363912 376657238.0 0.907612 0.931734 0.085012 0.068266 341858661.0 173251601.0 32020253.0 12693828.0 728.681885 321.0 0.728935 0.635045 0.97325 0.0 Yes 62.85 204 510.205901 0.365628 9.999999999999999e-05 95.2272 89.05112104526575 95.98 284185948.0 23.924899999999997 0.972382 77243808348.0 592146872.0 0.555427 98.69114533333332 45.57566866666667
FFPE_HD789_01_RNA_0002_23LGNLLT4_2 162.2 148.0 0.11 0.82 0.43 0.0 0.23 2.44 0.62 0.0 9999000000.0 638616626.0 592185572.0 0.004674 0.373334 371102766.0 0.90761 0.931814 0.084931 0.068186 336816734.0 170661040.0 31518274.0 12488136.0 720.459686 326.0 0.729266 0.635351 0.973846 0.0 Yes 62.71 208 543.259268 0.375087 9.999999999999999e-05 95.3512 89.75014812074704 96.16 284730941.0 24.144299999999998 0.97299 77567237890.0 592185572.0 0.549253 98.69759533333334 45.278708
FFPE_HD789_01_RNA_0002_23LGNLLT4_3 155.2 142.0 0.12 0.83 0.43 0.0 0.26 2.46 0.62 0.0 9999000000.0 604389384.0 591285138.0 0.004829 0.389313 361090011.0 0.901475 0.924863 0.090618 0.075137 325513548.0 164697514.0 32721363.0 13380181.0 675.320478 313.0 0.726769 0.631502 0.973571 0.0 Yes 62.67 188 478.04659300000003 0.391202 9.999999999999999e-05 95.1631 89.96276092018537 96.18 284360198.0 24.260399999999997 0.972695 76150829652.0 591285138.0 0.543353 98.547523 49.476155500000004
FFPE_HD789_02_RNA_0011_23LGNLLT4_1 169.9 155.0 0.15 1.7 0.56 0.0 0.32 4.98 0.85 0.0 9990000000.0 480576321.0 594616448.0 0.005364 0.424879 341976572.0 0.881993 0.908262 0.108681 0.091738 301620827.0 153387061.0 37166435.0 15492672.0 661.525549 283.0 0.726533 0.629022 0.977456 0.0 Yes 61.16 224 556.464983 0.42717 9.999999999999999e-05 93.8209 88.71177926940874 95.83 284917304.0 31.7681 0.976627 79986870284.0 594616448.0 0.550197 99.10274133333333 39.178151500000006
NTC_0001_0001_23LGNLLT4_1 42.5 31.0 0.0 0.04 0.02 0.0 0.0 0.12 0.01 0.0 9999000000.0 106835.0 458422.0 0.392187 0.486499 235400.0 0.007774 0.032185 0.228475 0.967815 1830.0 862.0 53783.0 25921.0 0.000669 0.0 0.0 0.0 0.943991 0.0 Skipped N/A 23 24.338618 0.800409 2.5699 6.3182 2.1172850533683056 9.81 22478.0 65.5152 0.924257 28776086.0 458422.0 0.667311 6.853488009812097 52.45170870007353
NTC_0001_0001_23LGNLLT4_2 37.1 31.0 0.0 0.0 0.08 0.0 0.0 0.0 0.21 0.0 9999000000.0 70550.0 81812.0 0.300592 0.440816 45748.0 0.015083 0.03199 0.447364 0.96801 690.0 327.0 20466.0 9895.0 0.000416 0.0 0.0 0.0 0.922359 0.0 Skipped N/A 22 25.249622 0.630269 2.7338 6.0295000000000005 2.309717616319968 12.36 5057.0 54.6452 0.889981 4227167.0 81812.0 0.681479 6.381053702184215 52.28428494323411
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