File Info

Filename
run_level_intermediate.tsv
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0005/A23LGNLLT4/nfcore_rnafusion__2cae617--20260515-145204/QC_run_metrics/intermediate/run_level_intermediate.tsv
Size
8.2 KB
Workflow Run
dev_rna_exp0005_2cae617
Published
May 16, 2026 7:31 AM

Content

View in new tab
SAMPLE_ID SOURCE_QC ANALYTE PIPELINE_VERSION QC_METRIC VALUE METRIC_ORIGIN
RUN RNA rnafusion_3.0.2-gunknown CLUSTER_DENSITY 9457.29 bclconvert
RUN RNA rnafusion_3.0.2-gunknown READS_PASSING_FILTER_PERCENT 79.5227 bclconvert
RUN RNA rnafusion_3.0.2-gunknown Q30_RUN_WIDE_PERCENT 94.4293 bclconvert
RUN RNA rnafusion_3.0.2-gunknown OCCUPANCY_RATE 91.755 bclconvert
RUN RNA rnafusion_3.0.2-gunknown YIELD_IN_GB 9796.925386976 bclconvert
NTC_0001_0001_23LGNLLT4_1 NTC RNA rnafusion_3.0.2-gunknown READS 3344443 bclconvert
FFPE_HD789_02_RNA_0011_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS 586052933 bclconvert
FFPE_HD789_01_RNA_0002_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS 522934407 bclconvert
FFPE_HD789_01_RNA_0002_23LGNLLT4_2 HD789 RNA rnafusion_3.0.2-gunknown READS 480325155 bclconvert
FFPE_HD789_01_RNA_0002_23LGNLLT4_3 HD789 RNA rnafusion_3.0.2-gunknown READS 535136407 bclconvert
NTC_0001_0001_23LGNLLT4_2 NTC RNA rnafusion_3.0.2-gunknown READS 641054 bclconvert
FFPE_HD789_01_RNA_0002_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS_SEQTOOLS 592146872.0 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_READS_ON_TARGET 0.907612 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_PAIRS_ON_TARGET 0.931734 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_READS_OFF_TARGET 0.085012 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_PAIRS_OFF_TARGET 0.068266 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS_ON_TARGET 341858661.0 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown PAIRS_ON_TARGET 173251601.0 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS_OFF_TARGET 32020253.0 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown PAIRS_OFF_TARGET 12693828.0 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown GC_BIAS 0.0 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown MAPPED_READS 284185948.0 star
FFPE_HD789_01_RNA_0002_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_UNMAPPED 0.004692 star
FFPE_HD789_01_RNA_0002_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAGMENT_LENGTH_MEDIAN 146.0 kallisto
FFPE_HD789_01_RNA_0002_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown MITOCHONDRIAL_CONTAMINATION 0.22 kallisto
FFPE_HD789_01_RNA_0002_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown RIBOSOMAL_CONTAMINATION 2.44 kallisto
FFPE_HD789_01_RNA_0002_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown PCT_CONTAMINATION 62.85 contamination
FFPE_HD789_01_RNA_0002_23LGNLLT4_2 HD789 RNA rnafusion_3.0.2-gunknown READS_SEQTOOLS 592185572.0 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_2 HD789 RNA rnafusion_3.0.2-gunknown FRAC_READS_ON_TARGET 0.90761 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_2 HD789 RNA rnafusion_3.0.2-gunknown FRAC_PAIRS_ON_TARGET 0.931814 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_2 HD789 RNA rnafusion_3.0.2-gunknown FRAC_READS_OFF_TARGET 0.084931 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_2 HD789 RNA rnafusion_3.0.2-gunknown FRAC_PAIRS_OFF_TARGET 0.068186 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_2 HD789 RNA rnafusion_3.0.2-gunknown READS_ON_TARGET 336816734.0 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_2 HD789 RNA rnafusion_3.0.2-gunknown PAIRS_ON_TARGET 170661040.0 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_2 HD789 RNA rnafusion_3.0.2-gunknown READS_OFF_TARGET 31518274.0 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_2 HD789 RNA rnafusion_3.0.2-gunknown PAIRS_OFF_TARGET 12488136.0 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_2 HD789 RNA rnafusion_3.0.2-gunknown GC_BIAS 0.0 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_2 HD789 RNA rnafusion_3.0.2-gunknown MAPPED_READS 284730941.0 star
FFPE_HD789_01_RNA_0002_23LGNLLT4_2 HD789 RNA rnafusion_3.0.2-gunknown FRAC_UNMAPPED 0.004674 star
FFPE_HD789_01_RNA_0002_23LGNLLT4_2 HD789 RNA rnafusion_3.0.2-gunknown FRAGMENT_LENGTH_MEDIAN 148.0 kallisto
FFPE_HD789_01_RNA_0002_23LGNLLT4_2 HD789 RNA rnafusion_3.0.2-gunknown MITOCHONDRIAL_CONTAMINATION 0.23 kallisto
FFPE_HD789_01_RNA_0002_23LGNLLT4_2 HD789 RNA rnafusion_3.0.2-gunknown RIBOSOMAL_CONTAMINATION 2.44 kallisto
FFPE_HD789_01_RNA_0002_23LGNLLT4_2 HD789 RNA rnafusion_3.0.2-gunknown PCT_CONTAMINATION 62.71 contamination
FFPE_HD789_01_RNA_0002_23LGNLLT4_3 HD789 RNA rnafusion_3.0.2-gunknown READS_SEQTOOLS 591285138.0 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_3 HD789 RNA rnafusion_3.0.2-gunknown FRAC_READS_ON_TARGET 0.901475 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_3 HD789 RNA rnafusion_3.0.2-gunknown FRAC_PAIRS_ON_TARGET 0.924863 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_3 HD789 RNA rnafusion_3.0.2-gunknown FRAC_READS_OFF_TARGET 0.090618 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_3 HD789 RNA rnafusion_3.0.2-gunknown FRAC_PAIRS_OFF_TARGET 0.075137 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_3 HD789 RNA rnafusion_3.0.2-gunknown READS_ON_TARGET 325513548.0 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_3 HD789 RNA rnafusion_3.0.2-gunknown PAIRS_ON_TARGET 164697514.0 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_3 HD789 RNA rnafusion_3.0.2-gunknown READS_OFF_TARGET 32721363.0 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_3 HD789 RNA rnafusion_3.0.2-gunknown PAIRS_OFF_TARGET 13380181.0 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_3 HD789 RNA rnafusion_3.0.2-gunknown GC_BIAS 0.0 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_3 HD789 RNA rnafusion_3.0.2-gunknown MAPPED_READS 284360198.0 star
FFPE_HD789_01_RNA_0002_23LGNLLT4_3 HD789 RNA rnafusion_3.0.2-gunknown FRAC_UNMAPPED 0.004829 star
FFPE_HD789_01_RNA_0002_23LGNLLT4_3 HD789 RNA rnafusion_3.0.2-gunknown FRAGMENT_LENGTH_MEDIAN 142.0 kallisto
FFPE_HD789_01_RNA_0002_23LGNLLT4_3 HD789 RNA rnafusion_3.0.2-gunknown MITOCHONDRIAL_CONTAMINATION 0.26 kallisto
FFPE_HD789_01_RNA_0002_23LGNLLT4_3 HD789 RNA rnafusion_3.0.2-gunknown RIBOSOMAL_CONTAMINATION 2.46 kallisto
FFPE_HD789_01_RNA_0002_23LGNLLT4_3 HD789 RNA rnafusion_3.0.2-gunknown PCT_CONTAMINATION 62.67 contamination
FFPE_HD789_02_RNA_0011_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS_SEQTOOLS 594616448.0 seqtools
FFPE_HD789_02_RNA_0011_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_READS_ON_TARGET 0.881993 seqtools
FFPE_HD789_02_RNA_0011_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_PAIRS_ON_TARGET 0.908262 seqtools
FFPE_HD789_02_RNA_0011_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_READS_OFF_TARGET 0.108681 seqtools
FFPE_HD789_02_RNA_0011_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_PAIRS_OFF_TARGET 0.091738 seqtools
FFPE_HD789_02_RNA_0011_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS_ON_TARGET 301620827.0 seqtools
FFPE_HD789_02_RNA_0011_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown PAIRS_ON_TARGET 153387061.0 seqtools
FFPE_HD789_02_RNA_0011_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown READS_OFF_TARGET 37166435.0 seqtools
FFPE_HD789_02_RNA_0011_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown PAIRS_OFF_TARGET 15492672.0 seqtools
FFPE_HD789_02_RNA_0011_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown GC_BIAS 0.0 seqtools
FFPE_HD789_02_RNA_0011_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown MAPPED_READS 284917304.0 star
FFPE_HD789_02_RNA_0011_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAC_UNMAPPED 0.005364 star
FFPE_HD789_02_RNA_0011_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown FRAGMENT_LENGTH_MEDIAN 155.0 kallisto
FFPE_HD789_02_RNA_0011_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown MITOCHONDRIAL_CONTAMINATION 0.32 kallisto
FFPE_HD789_02_RNA_0011_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown RIBOSOMAL_CONTAMINATION 4.98 kallisto
FFPE_HD789_02_RNA_0011_23LGNLLT4_1 HD789 RNA rnafusion_3.0.2-gunknown PCT_CONTAMINATION 61.16 contamination
NTC_0001_0001_23LGNLLT4_1 NTC RNA rnafusion_3.0.2-gunknown READS_SEQTOOLS 458422.0 seqtools
NTC_0001_0001_23LGNLLT4_2 NTC RNA rnafusion_3.0.2-gunknown READS_SEQTOOLS 81812.0 seqtools
FFPE_HD789_01_RNA_0002_23LGNLLT4_2 HD789 RNA rnafusion_3.0.2-gunknown NUMBER_ALL_RNA_FUSIONS 54 fusion
FFPE_HD789_01_RNA_0002_23LGNLLT4_2 HD789 RNA rnafusion_3.0.2-gunknown NUMBER_TRUE_RNA_FUSIONS 0 fusion
FFPE_HD789_01_RNA_0002_23LGNLLT4_2 HD789 RNA rnafusion_3.0.2-gunknown NUMBER_FALSE_RNA_FUSIONS 54 fusion
81 rows