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dev_rna_exp0005_2cae617
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NFCORE_RNAFUSION:GENERATE_SAMPLE_TYPE_MAP
1
DEMULTIPLEX:BCLCONVERT
8
DEMULTIPLEX:FLOWCELL_QC
1
DEMULTIPLEX:AGGREGATE_DEMUX_STATS
1
DEMULTIPLEX:CAT_FASTQ
95
DEMULTIPLEX:SAMPLESHEET_FROM_MERGED
1
RNAFUSION:FASTQC
95
3
TRIM_WORKFLOW:FASTP
95
15
TRIM_WORKFLOW:FASTQC_FOR_FASTP
95
1
RNAFUSION:KALLISTO_INDEX
1
RNAFUSION:KALLISTO_QUANT
95
1
RNAFUSION:KALLISTO_TO_TX2GENE_QC
95
RNAFUSION:KALLISTO_TO_MULTIQC
95
RNAFUSION:GTF2BED
1
FASTQ_ALIGN_STAR:STAR_ALIGNMENT
95
3
FASTQ_ALIGN_STAR:SAMTOOLS_INDEX_STAR_ALIGNMENT
95
RNAFUSION:SAMTOOLS_VIEW_ALIGNMENT_CRAM
95
RNAFUSION:SAMTOOLS_INDEX_ALIGNMENT_CRAM
95
ARRIBA_WORKFLOW:ARRIBA
95
2
ARRIBA_WORKFLOW:ARRIBA_FILTER
95
STARFUSION_WORKFLOW:STARFUSION
95
93
STARFUSION_WORKFLOW:STARFUSION_FILTER
95
FUSIONREPORT_WORKFLOW:FUSIONREPORT
95
FUSIONINSPECTOR_WORKFLOW:FUSIONINSPECTOR
87
FUSIONINSPECTOR_WORKFLOW:AGAT_CONVERTSPGFF2TSV
87
FUSIONINSPECTOR_WORKFLOW:VCF_COLLECT
87
FUSIONINSPECTOR_WORKFLOW:ARRIBA_VISUALISATION
87
RNAFUSION:CTATSPLICING_STARTOCANCERINTRONS
95
72
RNAFUSION:CANCER_INTRONS_TO_VCF
95
QC_WORKFLOW:GATK4_MARKDUPLICATES
95
1
QC_WORKFLOW:PICARD_COLLECTRNASEQMETRICS
95
1
QC_WORKFLOW:PICARD_COLLECTINSERTSIZEMETRICS
95
BAM_RSEQC:RSEQC_BAMSTAT
95
6
BAM_RSEQC:RSEQC_INNERDISTANCE
95
BAM_RSEQC:RSEQC_INFEREXPERIMENT
95
BAM_RSEQC:RSEQC_JUNCTIONANNOTATION
95
7
BAM_RSEQC:RSEQC_JUNCTIONSATURATION
95
BAM_RSEQC:RSEQC_READDISTRIBUTION
95
10
BAM_RSEQC:RSEQC_READDUPLICATION
95
QC_WORKFLOW:SEQTOOL_QC
95
2
QC_WORKFLOW:SEQTOOL_WHOLE_BAM_SATURATION
95
1
QC_WORKFLOW:SEQTOOL_TO_MULTIQC
95
QC_WORKFLOW:PRESEQ_LCEXTRAP
95
2
QC_WORKFLOW:PRESEQ_TO_MULTIQC
95
RNA_CONTAMINATION_DETECTION_WORKFLOW:NGSCheckMATE
93
RNA_CONTAMINATION_DETECTION_WORKFLOW:EXTRACT_VAF_FEATURES
93
RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION
93
RNAFUSION:CONTAMINATION_SKIPPED_LOW_READS
2
RNAFUSION:CONTAMINATION_TO_MULTIQC
93
RNAFUSION:MULTIQC
1
RNAFUSION:MULTIQC_GENERAL_STATS_TXT_TO_JSON
1
RNAFUSION:MULTIQC_GENERAL_STATS_TXT_TO_TSV
1
RNAFUSION:MULTIQC_EXTRACT_CONTROLS
1
RNAFUSION:RUN_LEVEL_INTERMEDIATE
1
RNAFUSION:RUN_LEVEL_METRICS
1