File Info
- Filename
- NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_2.FusionInspector.fusions.abridged.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0008/B23LG7FLT4/nfcore_rnafusion_100M__1bb6229e--20260226-142939/fusioninspector/NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_2.FusionInspector.fusions.abridged.tsv
- Size
- 11.0 KB
- Workflow Run
- dev_rna_exp0008_1bb6229e
- Published
- Feb 26, 2026 11:23 PM
Content
View in new tab| #FusionName | JunctionReadCount | SpanningFragCount | est_J | est_S | LeftGene | LeftLocalBreakpoint | LeftBreakpoint | RightGene | RightLocalBreakpoint | RightBreakpoint | SpliceType | LargeAnchorSupport | NumCounterFusionLeft | NumCounterFusionRight | FAR_left | FAR_right | LeftBreakDinuc | LeftBreakEntropy | RightBreakDinuc | RightBreakEntropy | FFPM | microh_brkpt_dist | num_microh_near_brkpt |
| STAG3L3--AC090114.3 | 279 | 3 | 279.00 | 2.74 | STAG3L3^ENSG00000174353.17 | 1230 | chr7:73005693:- | AC090114.3^ENSG00000280828.1 | 19364 | chr7:128608118:+ | ONLY_REF_SPLICE | YES | 62 | 240 | 4.49 | 1.17 | GT | 1.9899 | AG | 1.8892 | 2.8625 | 4340 | 0 |
| STAG3L3--AC090114.3 | 27 | 3 | 27.00 | 0.26 | STAG3L3^ENSG00000174353.17 | 1347 | chr7:73005576:- | AC090114.3^ENSG00000280828.1 | 19364 | chr7:128608118:+ | ONLY_REF_SPLICE | YES | 62 | 240 | 0.49 | 0.13 | GT | 1.9656 | AG | 1.8892 | 0.2769 | 4226 | 0 |
| STAG3L3--AC090114.3 | 2 | 0 | 2.00 | 0.00 | STAG3L3^ENSG00000174353.17 | 1230 | chr7:73005693:- | AC090114.3^ENSG00000280828.1 | 21553 | chr7:128615860:+ | ONLY_REF_SPLICE | YES | 62 | 144 | 0.05 | 0.02 | GT | 1.9899 | AG | 1.9656 | 0.0203 | 5299 | 0 |
| EML4--ALK | 239 | 1 | 239.00 | 0.97 | EML4^ENSG00000143924.19 | 8520 | chr2:42264951:+ | ALK^ENSG00000171094.18 | 59003 | chr2:29223528:- | ONLY_REF_SPLICE | YES | 471 | 165 | 0.51 | 1.45 | GT | 1.2419 | AG | 1.9086 | 2.4382 | 1008 | 0 |
| EML4--ALK | 149 | 0 | 149.00 | 0.00 | EML4^ENSG00000143924.19 | 8300 | chr2:42264731:+ | ALK^ENSG00000171094.18 | 59003 | chr2:29223528:- | ONLY_REF_SPLICE | YES | 486 | 165 | 0.31 | 0.90 | GT | 1.7819 | AG | 1.9086 | 1.5139 | 1031 | 0 |
| EML4--ALK | 5 | 1 | 5.00 | 0.02 | EML4^ENSG00000143924.19 | 8519 | chr2:42264950:+ | ALK^ENSG00000171094.18 | 59001 | chr2:29223530:- | INCL_NON_REF_SPLICE | YES | 472 | 147 | 0.01 | 0.05 | GG | 1.2419 | GC | 1.9329 | 0.051 | 1010 | 0 |
| EML4--ALK | 2 | 1 | 2.00 | 0.01 | EML4^ENSG00000143924.19 | 8520 | chr2:42264951:+ | ALK^ENSG00000171094.18 | 57853 | chr2:29224678:- | ONLY_REF_SPLICE | YES | 471 | 1 | 0.01 | 2.00 | GT | 1.2419 | AG | 1.9329 | 0.0204 | 2158 | 0 |
| DCBLD2--STXBP5L | 162 | 5 | 162.00 | 4.99 | DCBLD2^ENSG00000057019.16 | 19629 | chr3:98808081:- | STXBP5L^ENSG00000145087.13 | 53865 | chr3:121318475:+ | ONLY_REF_SPLICE | YES | 1266 | 30 | 0.13 | 5.42 | GT | 1.7819 | AG | 1.9086 | 1.6967 | 4623 | 0 |
| DCBLD2--STXBP5L | 2 | 0 | 2.00 | 0.00 | DCBLD2^ENSG00000057019.16 | 5450 | chr3:98881540:- | STXBP5L^ENSG00000145087.13 | 56024 | chr3:121378716:+ | ONLY_REF_SPLICE | YES | 1170 | 103 | 0.00 | 0.03 | GT | 1.7968 | AG | 1.9219 | 0.0203 | 2226 | 0 |
| DCBLD2--STXBP5L | 2 | 0 | 2.00 | 0.00 | DCBLD2^ENSG00000057019.16 | 6588 | chr3:98849461:- | STXBP5L^ENSG00000145087.13 | 53865 | chr3:121318475:+ | ONLY_REF_SPLICE | YES | 1829 | 30 | 0.00 | 0.10 | GT | 1.6402 | AG | 1.9086 | 0.0203 | 2425 | 0 |
| DCBLD2--STXBP5L | 1 | 1 | 1.00 | 0.01 | DCBLD2^ENSG00000057019.16 | 19629 | chr3:98808081:- | STXBP5L^ENSG00000145087.13 | 56024 | chr3:121378716:+ | ONLY_REF_SPLICE | YES | 1266 | 103 | 0.00 | 0.03 | GT | 1.7819 | AG | 1.9219 | 0.0103 | 2516 | 0 |
| DCBLD2--STXBP5L | 1 | 0 | 1.00 | 0.00 | DCBLD2^ENSG00000057019.16 | 5450 | chr3:98881540:- | STXBP5L^ENSG00000145087.13 | 53865 | chr3:121318475:+ | ONLY_REF_SPLICE | YES | 1170 | 30 | 0.00 | 0.06 | GT | 1.7968 | AG | 1.9086 | 0.0102 | 3107 | 0 |
| DCBLD2--STXBP5L | 1 | 0 | 1.00 | 0.00 | DCBLD2^ENSG00000057019.16 | 6588 | chr3:98849461:- | STXBP5L^ENSG00000145087.13 | 56024 | chr3:121378716:+ | ONLY_REF_SPLICE | YES | 1829 | 103 | 0.00 | 0.02 | GT | 1.6402 | AG | 1.9219 | 0.0102 | 1088 | 0 |
| ALK--PTPN3 | 147 | 1 | 147.00 | 0.99 | ALK^ENSG00000171094.18 | 15377 | chr2:29275099:- | PTPN3^ENSG00000070159.14 | 41256 | chr9:109457399:- | ONLY_REF_SPLICE | YES | 4 | 137 | 29.80 | 1.08 | GT | 1.9086 | AG | 1.7465 | 1.5037 | 2315 | 0 |
| ALK--PTPN3 | 1 | 1 | 1.00 | 0.01 | ALK^ENSG00000171094.18 | 15377 | chr2:29275099:- | PTPN3^ENSG00000070159.14 | 40101 | chr9:109463451:- | ONLY_REF_SPLICE | YES | 4 | 78 | 0.60 | 0.04 | GT | 1.9086 | AG | 1.9329 | 0.0103 | 2159 | 0 |
| SND1--CFTR | 87 | 1 | 87.00 | 0.96 | SND1^ENSG00000197157.11 | 24964 | chr7:127991056:+ | CFTR^ENSG00000001626.16 | 75444 | chr7:117627522:+ | ONLY_REF_SPLICE | YES | 1674 | 18 | 0.05 | 4.68 | GT | 1.8295 | AG | 1.9656 | 0.8937 | 1208 | 0 |
| SND1--CFTR | 4 | 1 | 4.00 | 0.04 | SND1^ENSG00000197157.11 | 27680 | chr7:128008144:+ | CFTR^ENSG00000001626.16 | 75444 | chr7:117627522:+ | ONLY_REF_SPLICE | YES | 758 | 18 | 0.01 | 0.32 | GT | 1.4295 | AG | 1.9656 | 0.041 | 1360 | 0 |
| SND1--CFTR | 4 | 0 | 4.00 | 0.00 | SND1^ENSG00000197157.11 | 24964 | chr7:127991056:+ | CFTR^ENSG00000001626.16 | 76833 | chr7:117642438:+ | ONLY_REF_SPLICE | YES | 1674 | 28 | 0.00 | 0.17 | GT | 1.8295 | AG | 1.7465 | 0.0406 | 1635 | 0 |
| SND1--CFTR | 1 | 0 | 1.00 | 0.00 | SND1^ENSG00000197157.11 | 22748 | chr7:127929329:+ | CFTR^ENSG00000001626.16 | 75444 | chr7:117627522:+ | ONLY_REF_SPLICE | YES | 2046 | 18 | 0.00 | 0.11 | GT | 1.7819 | AG | 1.9656 | 0.0102 | 992 | 0 |
| KATNAL1--ZC3H13 | 80 | 0 | 80.00 | 0.00 | KATNAL1^ENSG00000102781.14 | 1221 | chr13:30307331:- | ZC3H13^ENSG00000123200.17 | 32091 | chr13:45989097:- | ONLY_REF_SPLICE | YES | 47 | 78 | 1.69 | 1.03 | GT | 1.8062 | AG | 1.7968 | 0.8128 | 546 | 0 |
| KATNAL1--ZC3H13 | 15 | 0 | 15.00 | 0.00 | KATNAL1^ENSG00000102781.14 | 1612 | chr13:30306940:- | ZC3H13^ENSG00000123200.17 | 32091 | chr13:45989097:- | ONLY_REF_SPLICE | YES | 51 | 78 | 0.31 | 0.20 | GT | 1.2729 | AG | 1.7968 | 0.1524 | 286 | 0 |
| KATNAL1--ZC3H13 | 12 | 0 | 12.00 | 0.00 | KATNAL1^ENSG00000102781.14 | 1873 | chr13:30306679:- | ZC3H13^ENSG00000123200.17 | 32091 | chr13:45989097:- | INCL_NON_REF_SPLICE | YES | 59 | 78 | 0.22 | 0.16 | GT | 1.7232 | AG | 1.7968 | 0.1219 | 322 | 0 |
| KATNAL1--ZC3H13 | 2 | 0 | 2.00 | 0.00 | KATNAL1^ENSG00000102781.14 | 1839 | chr13:30306713:- | ZC3H13^ENSG00000123200.17 | 32091 | chr13:45989097:- | ONLY_REF_SPLICE | YES | 58 | 78 | 0.05 | 0.04 | GT | 1.9656 | AG | 1.7968 | 0.0203 | 305 | 0 |
| AC078846.1--SND1 | 79 | 3 | 79.00 | 1.21 | AC078846.1^ENSG00000273329.1 | 1269 | chr7:129611362:- | SND1^ENSG00000197157.11 | 17029 | chr7:127694828:+ | INCL_NON_REF_SPLICE | YES | 5 | 2508 | 13.83 | 0.03 | GC | 1.6729 | AG | 1.8892 | 0.815 | 1355 | 0 |
| AC078846.1--SND1 | 53 | 8 | 53.00 | 3.21 | AC078846.1^ENSG00000273329.1 | 1313 | chr7:129611318:- | SND1^ENSG00000197157.11 | 17029 | chr7:127694828:+ | INCL_NON_REF_SPLICE | YES | 7 | 2508 | 7.75 | 0.02 | GT | 1.5656 | AG | 1.8892 | 0.5711 | 1338 | 0 |
| AC078846.1--SND1 | 25 | 8 | 25.00 | 1.52 | AC078846.1^ENSG00000273329.1 | 1310 | chr7:129611321:- | SND1^ENSG00000197157.11 | 17029 | chr7:127694828:+ | INCL_NON_REF_SPLICE | YES | 7 | 2508 | 4.25 | 0.01 | GT | 1.5058 | AG | 1.8892 | 0.2694 | 1339 | 0 |
| AC078846.1--SND1 | 11 | 9 | 11.00 | 1.02 | AC078846.1^ENSG00000273329.1 | 5935 | chr7:129606696:- | SND1^ENSG00000197157.11 | 17029 | chr7:127694828:+ | INCL_NON_REF_SPLICE | YES | 3 | 2508 | 5.25 | 0.01 | GC | 1.9329 | AG | 1.8892 | 0.1222 | 2345 | 0 |
| AC078846.1--SND1 | 7 | 9 | 7.00 | 0.65 | AC078846.1^ENSG00000273329.1 | 1562 | chr7:129611069:- | SND1^ENSG00000197157.11 | 17029 | chr7:127694828:+ | INCL_NON_REF_SPLICE | YES | 1 | 2508 | 8.50 | 0.01 | GT | 1.5219 | AG | 1.8892 | 0.0777 | 1268 | 0 |
| AC078846.1--SND1 | 6 | 9 | 6.00 | 0.56 | AC078846.1^ENSG00000273329.1 | 5551 | chr7:129607080:- | SND1^ENSG00000197157.11 | 17029 | chr7:127694828:+ | INCL_NON_REF_SPLICE | YES | 1 | 2508 | 8.00 | 0.01 | GT | 1.7465 | AG | 1.8892 | 0.0667 | 2399 | 0 |
| AC078846.1--SND1 | 3 | 9 | 3.00 | 0.28 | AC078846.1^ENSG00000273329.1 | 5675 | chr7:129606956:- | SND1^ENSG00000197157.11 | 17029 | chr7:127694828:+ | INCL_NON_REF_SPLICE | YES | 1 | 2508 | 6.50 | 0.01 | GT | 1.9656 | AG | 1.8892 | 0.0333 | 2376 | 0 |
| AC078846.1--SND1 | 3 | 9 | 3.00 | 0.28 | AC078846.1^ENSG00000273329.1 | 5743 | chr7:129606888:- | SND1^ENSG00000197157.11 | 17029 | chr7:127694828:+ | INCL_NON_REF_SPLICE | YES | 0 | 2508 | 13.00 | 0.01 | GT | 1.9329 | AG | 1.8892 | 0.0333 | 2365 | 0 |
| AC078846.1--SND1 | 3 | 9 | 3.00 | 0.28 | AC078846.1^ENSG00000273329.1 | 6973 | chr7:129605658:- | SND1^ENSG00000197157.11 | 17029 | chr7:127694828:+ | INCL_NON_REF_SPLICE | YES | 3 | 2508 | 3.25 | 0.01 | GT | 1.9086 | AG | 1.8892 | 0.0333 | 2357 | 0 |
| AC078846.1--SND1 | 4 | 0 | 4.00 | 0.00 | AC078846.1^ENSG00000273329.1 | 1211 | chr7:129611420:- | SND1^ENSG00000197157.11 | 17125 | chr7:127694924:+ | INCL_NON_REF_SPLICE | YES | 7 | 3301 | 0.62 | 0.00 | GC | 1.9656 | AG | 1.9656 | 0.0406 | 1466 | 0 |
| TRMT61B--ALK | 60 | 0 | 60.00 | 0.00 | TRMT61B^ENSG00000171103.11 | 1731 | chr2:28869579:- | ALK^ENSG00000171094.18 | 22621 | chr2:29297057:- | ONLY_REF_SPLICE | YES | 65 | 8 | 0.92 | 6.78 | GT | 1.7465 | AG | 1.9329 | 0.6096 | 5174 | 0 |
| TRMT61B--ALK | 30 | 0 | 30.00 | 0.00 | TRMT61B^ENSG00000171103.11 | 2834 | chr2:28865017:- | ALK^ENSG00000171094.18 | 22621 | chr2:29297057:- | ONLY_REF_SPLICE | YES | 68 | 8 | 0.45 | 3.44 | GT | 1.9086 | AG | 1.9329 | 0.3048 | 5388 | 0 |
| TRMT61B--ALK | 3 | 0 | 3.00 | 0.00 | TRMT61B^ENSG00000171103.11 | 1648 | chr2:28869662:- | ALK^ENSG00000171094.18 | 22621 | chr2:29297057:- | INCL_NON_REF_SPLICE | YES | 67 | 8 | 0.06 | 0.44 | GT | 1.9086 | AG | 1.9329 | 0.0305 | 5167 | 0 |
| PTPN3--ALK | 34 | 1 | 34.00 | 1.00 | PTPN3^ENSG00000070159.14 | 2250 | chr9:109463297:- | ALK^ENSG00000171094.18 | 51926 | chr2:29275496:- | ONLY_REF_SPLICE | YES | 129 | 12 | 0.28 | 2.77 | GT | 1.7819 | AG | 1.9086 | 0.3556 | 2554 | 0 |
| PTCH1--LUC7L2 | 19 | 0 | 19.00 | 0.00 | PTCH1^ENSG00000185920.16 | 5449 | chr9:95506407:- | LUC7L2^ENSG00000146963.18 | 47136 | chr7:139376062:+ | ONLY_REF_SPLICE | YES | 8 | 569 | 2.22 | 0.04 | GT | 1.6729 | AG | 1.9656 | 0.193 | 1124 | 0 |
| DELEC1--SENP7 | 9 | 1 | 9.00 | 0.56 | DELEC1^ENSG00000173077.16 | 8077 | chr9:115084383:+ | SENP7^ENSG00000138468.16 | 35354 | chr3:101459052:- | ONLY_REF_SPLICE | YES | 351 | 80 | 0.03 | 0.14 | GT | 1.9329 | AG | 1.8323 | 0.0971 | 2464 | 0 |
| DELEC1--SENP7 | 7 | 1 | 7.00 | 0.44 | DELEC1^ENSG00000173077.16 | 9192 | chr9:115087454:+ | SENP7^ENSG00000138468.16 | 35354 | chr3:101459052:- | ONLY_REF_SPLICE | YES | 0 | 80 | 9.00 | 0.11 | GT | 1.9329 | AG | 1.8323 | 0.0756 | 3579 | 0 |
| COX7A2L--MAP4K3 | 9 | 0 | 9.00 | 0.00 | COX7A2L^ENSG00000115944.15 | 8717 | chr2:42361090:- | MAP4K3^ENSG00000011566.15 | 30938 | chr2:39315388:- | ONLY_REF_SPLICE | YES | 382 | 163 | 0.03 | 0.06 | GT | 1.8892 | AG | 1.7465 | 0.0914 | 5650 | 0 |
| COX7A2L--MAP4K3 | 5 | 0 | 5.00 | 0.00 | COX7A2L^ENSG00000115944.15 | 16383 | chr2:42333667:- | MAP4K3^ENSG00000011566.15 | 30938 | chr2:39315388:- | INCL_NON_REF_SPLICE | YES | 1 | 163 | 3.00 | 0.04 | GT | 1.5656 | AG | 1.7465 | 0.0508 | 2144 | 0 |
| COX7A2L--MAP4K3 | 2 | 0 | 2.00 | 0.00 | COX7A2L^ENSG00000115944.15 | 11833 | chr2:42353212:- | MAP4K3^ENSG00000011566.15 | 30938 | chr2:39315388:- | ONLY_REF_SPLICE | YES | 483 | 163 | 0.01 | 0.02 | GT | 1.9086 | AG | 1.7465 | 0.0203 | 3186 | 0 |
| SENP7--STX17-AS1 | 7 | 0 | 7.00 | 0.00 | SENP7^ENSG00000138468.16 | 10429 | chr3:101366430:- | STX17-AS1^ENSG00000255145.3 | 33022 | chr9:99895005:- | ONLY_REF_SPLICE | YES | 25 | 0 | 0.31 | 8.00 | GT | 1.9086 | AG | 1.9329 | 0.0711 | 4194 | 0 |
| GPT2--ZNF646 | 6 | 0 | 6.00 | 0.00 | GPT2^ENSG00000166123.14 | 1597 | chr16:46884958:+ | ZNF646^ENSG00000167395.10 | 29133 | chr16:31082971:+ | ONLY_REF_SPLICE | YES | 238 | 102 | 0.03 | 0.07 | GT | 1.8323 | AG | 1.7819 | 0.061 | 145 | 0 |
| PTCH1--FMC1 | 5 | 0 | 5.00 | 0.00 | PTCH1^ENSG00000185920.16 | 5449 | chr9:95506407:- | FMC1^ENSG00000164898.13 | 45098 | chr7:139345501:+ | ONLY_REF_SPLICE | YES | 8 | 124 | 0.67 | 0.05 | GT | 1.6729 | AG | 1.8892 | 0.0508 | 757 | 0 |
| SND1--AC078846.1 | 5 | 0 | 5.00 | 0.00 | SND1^ENSG00000197157.11 | 24964 | chr7:127991056:+ | AC078846.1^ENSG00000273329.1 | 42569 | chr7:129609674:- | INCL_NON_REF_SPLICE | YES | 1677 | 5 | 0.00 | 1.00 | GT | 1.8295 | AG | 1.5301 | 0.0508 | 1196 | 0 |
| AC025575.2--PTPRR | 3 | 0 | 3.00 | 0.00 | AC025575.2^ENSG00000258053.1 | 2287 | chr12:71115850:- | PTPRR^ENSG00000153233.13 | 7972 | chr12:70892977:- | ONLY_REF_SPLICE | YES | 0 | 1 | 4.00 | 2.00 | GT | 1.9656 | AG | 1.9086 | 0.0305 | 5157 | 0 |
| PPP2R3A--PCCB | 3 | 0 | 3.00 | 0.00 | PPP2R3A^ENSG00000073711.11 | 19188 | chr3:136106322:+ | PCCB^ENSG00000114054.14 | 30228 | chr3:136255856:+ | ONLY_REF_SPLICE | YES | 49 | 102 | 0.08 | 0.04 | GT | 1.8892 | AG | 1.8062 | 0.0305 | 709 | 0 |
| RPSAP52--HMGA2 | 3 | 0 | 3.00 | 0.00 | RPSAP52^ENSG00000241749.4 | 1155 | chr12:65826843:- | HMGA2^ENSG00000149948.14 | 8958 | chr12:65828001:+ | ONLY_REF_SPLICE | YES | 0 | 475 | 4.00 | 0.01 | GT | 1.9329 | AG | 1.8256 | 0.0305 | 799 | 0 |
| TNC--DELEC1 | 3 | 0 | 3.00 | 0.00 | TNC^ENSG00000041982.16 | 1276 | chr9:115117982:- | DELEC1^ENSG00000173077.16 | 49125 | chr9:115084255:+ | ONLY_REF_SPLICE | YES | 50 | 4 | 0.08 | 0.80 | GT | 1.9329 | AG | 1.8892 | 0.0305 | 3527 | 0 |
| STXBP5L--DCBLD2 | 2 | 0 | 2.00 | 0.00 | STXBP5L^ENSG00000145087.13 | 25096 | chr3:121318540:+ | DCBLD2^ENSG00000057019.16 | 49391 | chr3:98825366:- | ONLY_REF_SPLICE | YES | 90 | 1748 | 0.03 | 0.00 | GT | 1.8892 | AG | 1.6402 | 0.0203 | 2103 | 0 |
| STXBP5L--DCBLD2 | 1 | 0 | 1.00 | 0.00 | STXBP5L^ENSG00000145087.13 | 25096 | chr3:121318540:+ | DCBLD2^ENSG00000057019.16 | 51957 | chr3:98820288:- | ONLY_REF_SPLICE | YES | 90 | 1084 | 0.02 | 0.00 | GT | 1.8892 | AG | 1.9899 | 0.0102 | 3299 | 0 |
| COTL1--BMERB1 | 1 | 0 | 1.00 | 0.00 | COTL1^ENSG00000103187.8 | 1578 | chr16:84617501:- | BMERB1^ENSG00000166780.11 | 21898 | chr16:15567983:+ | ONLY_REF_SPLICE | YES | 1258 | 472 | 0.00 | 0.00 | GT | 1.9329 | AG | 1.9656 | 0.0102 | 1762 | 0 |
| HIP1--AC004875.1 | 1 | 0 | 1.00 | 0.00 | HIP1^ENSG00000127946.17 | 22727 | chr7:75553453:- | AC004875.1^ENSG00000227743.2 | 40532 | chr7:121650405:- | ONLY_REF_SPLICE | YES | 245 | 3 | 0.01 | 0.50 | GT | 1.8062 | AG | 1.9899 | 0.0102 | 2537 | 0 |
56 rows