File Info
- Filename
- FFPE_V4_0001_RNA_0001_B23LG7FLT4_1.fusions.csv
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- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0008/B23LG7FLT4/nfcore_rnafusion_100M__1bb6229e--20260226-142939/fusionreport/FFPE_V4_0001_RNA_0001_B23LG7FLT4_1/FFPE_V4_0001_RNA_0001_B23LG7FLT4_1.fusions.csv
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- 9.9 KB
- Workflow Run
- dev_rna_exp0008_1bb6229e
- Published
- Feb 26, 2026 11:32 PM
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| FGFR3--TACC3 | COSMIC,Mitelman,FusionGDB2 | 0.625 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.500 + 0.000) | position: 4:1806934#4:1739702,reading-frame: in-frame,type: duplication,split_reads1: 304,split_reads2: 300,discordant_mates: 6,coverage1: 3796,coverage2: 10301,confidence: high | position: chr4:1806934:+#chr4:1739702:+,junction_reads: 1275,spanning_reads: 6,ffmp: 13.0232 |
| LMNA--NTRK1 | COSMIC,Mitelman,FusionGDB2 | 0.625 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.500 + 0.000) | position: 1:156130773#1:156874906,reading-frame: in-frame,type: deletion,split_reads1: 250,split_reads2: 259,discordant_mates: 14,coverage1: 8315,coverage2: 4351,confidence: high | position: chr1:156130773:+#chr1:156874906:+,junction_reads: 547,spanning_reads: 14,ffmp: 5.7034 |
| TMPRSS2--ERG | COSMIC,Mitelman,FusionGDB2 | 0.625 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.500 + 0.000) | position: 21:41508081#21:38584945,reading-frame: .,type: deletion,split_reads1: 112,split_reads2: 264,discordant_mates: 0,coverage1: 290,coverage2: 3813,confidence: high | position: chr21:41508081:-#chr21:38584945:-,junction_reads: 541,spanning_reads: 0,ffmp: 5.5001 |
| ETV6--NTRK3 | COSMIC,Mitelman,FusionGDB2 | 0.625 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.500 + 0.000) | position: 12:11869969#15:87940753,reading-frame: in-frame,type: translocation,split_reads1: 250,split_reads2: 146,discordant_mates: 1,coverage1: 7899,coverage2: 471,confidence: high | position: chr12:11869969:+#chr15:87940753:-,junction_reads: 426,spanning_reads: 2,ffmp: 4.3512 |
| FGFR3--BAIAP2L1 | COSMIC,Mitelman,FusionGDB2 | 0.625 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.500 + 0.000) | position: 4:1806934#7:98362432,reading-frame: in-frame,type: translocation,split_reads1: 298,split_reads2: 95,discordant_mates: 2,coverage1: 3796,coverage2: 211,confidence: high | position: chr4:1806934:+#chr7:98362432:-,junction_reads: 415,spanning_reads: 2,ffmp: 4.2394 |
| TPM3--NTRK1 | COSMIC,Mitelman,FusionGDB2 | 0.625 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.500 + 0.000) | position: 1:154170400#1:156874571,reading-frame: in-frame,type: inversion,split_reads1: 231,split_reads2: 103,discordant_mates: 2,coverage1: 36539,coverage2: 1397,confidence: high | position: chr1:154170400:-#chr1:156874571:+,junction_reads: 381,spanning_reads: 2,ffmp: 3.8937 |
| KIF5B--RET | COSMIC,Mitelman,FusionGDB2 | 0.625 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.500 + 0.000) | position: 10:32017143#10:43114480,reading-frame: in-frame,type: inversion,split_reads1: 75,split_reads2: 279,discordant_mates: 6,coverage1: 3617,coverage2: 1126,confidence: high | position: chr10:32017143:-#chr10:43114480:+,junction_reads: 379,spanning_reads: 6,ffmp: 3.9141 |
| CD74--ROS1 | COSMIC,Mitelman,FusionGDB2 | 0.625 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.500 + 0.000) | position: 5:150404680#6:117324415,reading-frame: in-frame,type: translocation,split_reads1: 125,split_reads2: 216,discordant_mates: 5,coverage1: 65535,coverage2: 1334,confidence: medium | position: chr5:150404680:-#chr6:117324415:-,junction_reads: 376,spanning_reads: 5,ffmp: 3.8734 |
| SLC34A2--ROS1 | COSMIC,Mitelman,FusionGDB2 | 0.625 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.500 + 0.000) | position: 4:25664330#6:117324415,reading-frame: in-frame,type: translocation,split_reads1: 52,split_reads2: 229,discordant_mates: 13,coverage1: 1216,coverage2: 1334,confidence: high | position: chr4:25664330:+#chr6:117324415:-,junction_reads: 357,spanning_reads: 13,ffmp: 3.7616 |
| NCOA4--RET | COSMIC,Mitelman,FusionGDB2 | 0.625 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.500 + 0.000) | position: 10:46012883#10:43116584,reading-frame: in-frame,type: inversion,split_reads1: 150,split_reads2: 157,discordant_mates: 3,coverage1: 7647,coverage2: 2417,confidence: high | position: chr10:46012883:-#chr10:43116584:+,junction_reads: 337,spanning_reads: 4,ffmp: 3.4668 |
| CCDC6--RET | COSMIC,Mitelman,FusionGDB2 | 0.625 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.500 + 0.000) | position: 10:59906122#10:43116584,reading-frame: in-frame,type: inversion,split_reads1: 136,split_reads2: 154,discordant_mates: 2,coverage1: 7044,coverage2: 2417,confidence: high | position: chr10:59906122:-#chr10:43116584:+,junction_reads: 324,spanning_reads: 2,ffmp: 3.3142 |
| PAX8--PPARG | COSMIC,Mitelman,FusionGDB2 | 0.625 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.500 + 0.000) | position: 2:113235394#3:12379704,reading-frame: in-frame,type: translocation,split_reads1: 93,split_reads2: 74,discordant_mates: 1,coverage1: 570,coverage2: 176,confidence: high | position: chr2:113235394:-#chr3:12379704:+,junction_reads: 173,spanning_reads: 1,ffmp: 1.769 |
| SLC45A3--BRAF | COSMIC,Mitelman,FusionGDB2 | 0.625 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.500 + 0.000) | position: 1:205680394#7:140794467,reading-frame: .,type: translocation,split_reads1: 15,split_reads2: 121,discordant_mates: 0,coverage1: 22,coverage2: 4224,confidence: high | position: chr1:205680394:-#chr7:140794467:-,junction_reads: 160,spanning_reads: 0,ffmp: 1.6266 |
| EGFR--SEPTIN14 | Mitelman | 0.375 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500) | position: 7:55200413#7:55796092,reading-frame: in-frame,type: inversion,split_reads1: 7,split_reads2: 23,discordant_mates: 0,coverage1: 329,coverage2: 57,confidence: high | position: chr7:55200413:+#chr7:55796092:-,junction_reads: 141,spanning_reads: 0,ffmp: 1.4335 |
| TFG--NTRK1 | COSMIC,Mitelman,FusionGDB2 | 0.625 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.500 + 0.000) | position: 3:100732672#1:156874571,reading-frame: in-frame,type: translocation,split_reads1: 59,split_reads2: 45,discordant_mates: 3,coverage1: 3321,coverage2: 1397,confidence: high | position: chr3:100732672:+#chr1:156874571:+,junction_reads: 129,spanning_reads: 3,ffmp: 1.342 |
| EML4--ALK | COSMIC,Mitelman,FusionGDB2 | 0.625 | 0.5 * (0.125 + 0.125) + 0.5 * (0.500 + 0.500 + 0.000) | position: 2:42295516#2:29223528,reading-frame: in-frame,type: inversion,split_reads1: 20,split_reads2: 70,discordant_mates: 0,coverage1: 3188,coverage2: 648,confidence: high | position: chr2:42295516:+#chr2:29223528:-,junction_reads: 113,spanning_reads: 0,ffmp: 1.1488 |
| EGFR--AC069287.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: 7:55200413#11:121426,reading-frame: out-of-frame,type: translocation,split_reads1: 56,split_reads2: 14,discordant_mates: 0,coverage1: 329,coverage2: 44,confidence: high | ||
| NOM1--MNX1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: 7:156992944#7:156994181,reading-frame: .,type: duplication,split_reads1: 7,split_reads2: 7,discordant_mates: 0,coverage1: 8,coverage2: 102,confidence: high | ||
| MNX1--MNX1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: 7:156992944#7:156994181,reading-frame: .,type: duplication,split_reads1: 7,split_reads2: 7,discordant_mates: 0,coverage1: 8,coverage2: 102,confidence: high | ||
| AL356387.2--PIFO | 0.062 | 0.5 * (0.125) + 0.5 * () | position: 1:111333485#1:111346910,reading-frame: .,type: deletion/read-through,split_reads1: 5,split_reads2: 6,discordant_mates: 0,coverage1: 18,coverage2: 93,confidence: high | ||
| PIFO--PIFO | 0.062 | 0.5 * (0.125) + 0.5 * () | position: 1:111333485#1:111346910,reading-frame: .,type: deletion/read-through,split_reads1: 5,split_reads2: 6,discordant_mates: 0,coverage1: 18,coverage2: 93,confidence: high | ||
| IGHG3--FP671120.4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: 14:105770295#21:8216921,reading-frame: .,type: translocation,split_reads1: 19,split_reads2: 0,discordant_mates: 0,coverage1: 65535,coverage2: 21226,confidence: medium | ||
| RNU6-1013P--SGCB | 0.062 | 0.5 * (0.125) + 0.5 * () | position: 9:111895510#4:52033640,reading-frame: .,type: translocation,split_reads1: 0,split_reads2: 2,discordant_mates: 0,coverage1: 0,coverage2: 98,confidence: medium | ||
| UGCG--SGCB | 0.062 | 0.5 * (0.125) + 0.5 * () | position: 9:111895510#4:52033640,reading-frame: .,type: translocation,split_reads1: 0,split_reads2: 2,discordant_mates: 0,coverage1: 0,coverage2: 98,confidence: medium | ||
| RET--ROBO2 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: 10:43119686#3:77634153,reading-frame: out-of-frame,type: translocation/5'-5',split_reads1: 6,split_reads2: 0,discordant_mates: 0,coverage1: 803,coverage2: 1,confidence: low | ||
| OR2T35--OR2T34 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: 1:248642666#1:248574777,reading-frame: .,type: deletion/read-through,split_reads1: 1,split_reads2: 4,discordant_mates: 0,coverage1: 7,coverage2: 145,confidence: low | ||
| C20orf96--SENP6 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: 20:277058#6:75644356,reading-frame: .,type: translocation,split_reads1: 0,split_reads2: 0,discordant_mates: 3,coverage1: 68,coverage2: 11,confidence: low | ||
| CD80--ADPRH | 0.062 | 0.5 * (0.125) + 0.5 * () | position: 3:119562419#3:119586285,reading-frame: .,type: deletion/read-through,split_reads1: 1,split_reads2: 2,discordant_mates: 0,coverage1: 22,coverage2: 723,confidence: low | ||
| AC073352.2--ADPRH | 0.062 | 0.5 * (0.125) + 0.5 * () | position: 3:119562419#3:119586285,reading-frame: .,type: deletion/read-through,split_reads1: 1,split_reads2: 2,discordant_mates: 0,coverage1: 22,coverage2: 723,confidence: low | ||
| Y_RNA--ILDR1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: 3:122034755#3:122007161,reading-frame: .,type: deletion/read-through,split_reads1: 1,split_reads2: 2,discordant_mates: 0,coverage1: 5,coverage2: 326,confidence: low | ||
| CD86--ILDR1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: 3:122034755#3:122007161,reading-frame: .,type: deletion/read-through,split_reads1: 1,split_reads2: 2,discordant_mates: 0,coverage1: 5,coverage2: 326,confidence: low | ||
| RAB11FIP3--CYTH1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: 16:489000#17:78709732,reading-frame: out-of-frame,type: translocation,split_reads1: 0,split_reads2: 2,discordant_mates: 0,coverage1: 632,coverage2: 2803,confidence: low | ||
| MOSPD2--MAD1L1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: X:14873758#7:1898390,reading-frame: in-frame,type: translocation,split_reads1: 0,split_reads2: 2,discordant_mates: 0,coverage1: 203,coverage2: 1531,confidence: low | ||
| MOSPD2--AC069288.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: X:14873758#7:1898390,reading-frame: out-of-frame,type: translocation,split_reads1: 0,split_reads2: 2,discordant_mates: 0,coverage1: 203,coverage2: 1531,confidence: low |
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