#FusionName	JunctionReadCount	SpanningFragCount	est_J	est_S	LeftGene	LeftLocalBreakpoint	LeftBreakpoint	RightGene	RightLocalBreakpoint	RightBreakpoint	SpliceType	LargeAnchorSupport	NumCounterFusionLeft	NumCounterFusionRight	FAR_left	FAR_right	LeftBreakDinuc	LeftBreakEntropy	RightBreakDinuc	RightBreakEntropy	FFPM	microh_brkpt_dist	num_microh_near_brkpt
STAG3L3--AC090114.3	301	4	301.00	3.55	STAG3L3^ENSG00000174353.17	1230	chr7:73005693:-	AC090114.3^ENSG00000280828.1	19364	chr7:128608118:+	ONLY_REF_SPLICE	YES	67	209	4.50	1.46	GT	1.9899	AG	1.8892	3.0967	4340	0
STAG3L3--AC090114.3	37	5	37.00	1.45	STAG3L3^ENSG00000174353.17	1347	chr7:73005576:-	AC090114.3^ENSG00000280828.1	19364	chr7:128608118:+	ONLY_REF_SPLICE	YES	57	209	0.74	0.20	GT	1.9656	AG	1.8892	0.3909	4226	0
STAG3L3--AC090114.3	3	0	3.00	0.00	STAG3L3^ENSG00000174353.17	1230	chr7:73005693:-	AC090114.3^ENSG00000280828.1	21553	chr7:128615860:+	ONLY_REF_SPLICE	YES	67	113	0.06	0.04	GT	1.9899	AG	1.9656	0.0305	5299	0
EML4--ALK	271	0	271.00	0.00	EML4^ENSG00000143924.19	8520	chr2:42264951:+	ALK^ENSG00000171094.18	59003	chr2:29223528:-	ONLY_REF_SPLICE	YES	358	157	0.76	1.72	GT	1.2419	AG	1.9086	2.7555	1008	0
EML4--ALK	166	0	166.00	0.00	EML4^ENSG00000143924.19	8300	chr2:42264731:+	ALK^ENSG00000171094.18	59003	chr2:29223528:-	ONLY_REF_SPLICE	YES	367	157	0.45	1.06	GT	1.7819	AG	1.9086	1.6879	1031	0
EML4--ALK	4	0	4.00	0.00	EML4^ENSG00000143924.19	8519	chr2:42264950:+	ALK^ENSG00000171094.18	59001	chr2:29223530:-	INCL_NON_REF_SPLICE	YES	360	147	0.01	0.03	GG	1.2419	GC	1.9329	0.0407	1010	0
EML4--ALK	3	0	3.00	0.00	EML4^ENSG00000143924.19	8300	chr2:42264731:+	ALK^ENSG00000171094.18	57853	chr2:29224678:-	ONLY_REF_SPLICE	YES	367	0	0.01	4.00	GT	1.7819	AG	1.9329	0.0305	2168	0
DCBLD2--STXBP5L	191	3	191.00	2.99	DCBLD2^ENSG00000057019.16	19629	chr3:98808081:-	STXBP5L^ENSG00000145087.13	53865	chr3:121318475:+	ONLY_REF_SPLICE	YES	1266	15	0.15	12.19	GT	1.7819	AG	1.9086	1.9725	4623	0
DCBLD2--STXBP5L	4	0	4.00	0.00	DCBLD2^ENSG00000057019.16	6588	chr3:98849461:-	STXBP5L^ENSG00000145087.13	53865	chr3:121318475:+	ONLY_REF_SPLICE	YES	1404	15	0.00	0.31	GT	1.6402	AG	1.9086	0.0407	2425	0
DCBLD2--STXBP5L	1	2	1.00	0.01	DCBLD2^ENSG00000057019.16	19629	chr3:98808081:-	STXBP5L^ENSG00000145087.13	56024	chr3:121378716:+	ONLY_REF_SPLICE	YES	1266	87	0.00	0.05	GT	1.7819	AG	1.9219	0.0103	2516	0
DCBLD2--STXBP5L	1	0	1.00	0.00	DCBLD2^ENSG00000057019.16	6588	chr3:98849461:-	STXBP5L^ENSG00000145087.13	56024	chr3:121378716:+	ONLY_REF_SPLICE	YES	1404	87	0.00	0.02	GT	1.6402	AG	1.9219	0.0102	1088	0
DCBLD2--STXBP5L	1	0	1.00	0.00	DCBLD2^ENSG00000057019.16	1574	chr3:98901122:-	STXBP5L^ENSG00000145087.13	53865	chr3:121318475:+	ONLY_REF_SPLICE	YES	1514	15	0.00	0.12	GT	1.8256	AG	1.9086	0.0102	2194	0
ALK--PTPN3	154	1	154.00	1.00	ALK^ENSG00000171094.18	15377	chr2:29275099:-	PTPN3^ENSG00000070159.14	41256	chr9:109457399:-	ONLY_REF_SPLICE	YES	3	132	39.00	1.17	GT	1.9086	AG	1.7465	1.5761	2315	0
SND1--CFTR	85	1	85.00	0.99	SND1^ENSG00000197157.11	24964	chr7:127991056:+	CFTR^ENSG00000001626.16	75444	chr7:117627522:+	ONLY_REF_SPLICE	YES	6	15	12.43	5.44	GT	1.8295	AG	1.9656	0.8744	1208	0
SND1--CFTR	1	1	1.00	0.01	SND1^ENSG00000197157.11	24964	chr7:127991056:+	CFTR^ENSG00000001626.16	76833	chr7:117642438:+	ONLY_REF_SPLICE	YES	6	34	0.43	0.09	GT	1.8295	AG	1.7465	0.0103	1635	0
SND1--CFTR	1	0	1.00	0.00	SND1^ENSG00000197157.11	20479	chr7:127904819:+	CFTR^ENSG00000001626.16	75444	chr7:117627522:+	ONLY_REF_SPLICE	YES	8	15	0.22	0.12	GT	1.9329	AG	1.9656	0.0102	1499	0
SND1--CFTR	1	0	1.00	0.00	SND1^ENSG00000197157.11	22748	chr7:127929329:+	CFTR^ENSG00000001626.16	75444	chr7:117627522:+	ONLY_REF_SPLICE	YES	7	15	0.25	0.12	GT	1.7819	AG	1.9656	0.0102	992	0
AC078846.1--SND1	73	1	73.00	0.41	AC078846.1^ENSG00000273329.1	1269	chr7:129611362:-	SND1^ENSG00000197157.11	17029	chr7:127694828:+	INCL_NON_REF_SPLICE	YES	6	3	10.71	18.75	GC	1.6729	AG	1.8892	0.7465	1355	0
AC078846.1--SND1	42	1	42.00	0.23	AC078846.1^ENSG00000273329.1	1313	chr7:129611318:-	SND1^ENSG00000197157.11	17029	chr7:127694828:+	INCL_NON_REF_SPLICE	YES	4	3	8.80	11.00	GT	1.5656	AG	1.8892	0.4294	1338	0
AC078846.1--SND1	32	1	32.00	0.18	AC078846.1^ENSG00000273329.1	1310	chr7:129611321:-	SND1^ENSG00000197157.11	17029	chr7:127694828:+	INCL_NON_REF_SPLICE	YES	4	3	6.80	8.50	GT	1.5058	AG	1.8892	0.3272	1339	0
AC078846.1--SND1	10	2	10.00	0.38	AC078846.1^ENSG00000273329.1	5935	chr7:129606696:-	SND1^ENSG00000197157.11	17029	chr7:127694828:+	INCL_NON_REF_SPLICE	YES	4	3	2.60	3.25	GC	1.9329	AG	1.8892	0.1056	2345	0
AC078846.1--SND1	9	2	9.00	0.34	AC078846.1^ENSG00000273329.1	5551	chr7:129607080:-	SND1^ENSG00000197157.11	17029	chr7:127694828:+	INCL_NON_REF_SPLICE	YES	2	3	4.00	3.00	GT	1.7465	AG	1.8892	0.095	2399	0
AC078846.1--SND1	5	2	5.00	0.19	AC078846.1^ENSG00000273329.1	5743	chr7:129606888:-	SND1^ENSG00000197157.11	17029	chr7:127694828:+	INCL_NON_REF_SPLICE	YES	1	3	4.00	2.00	GT	1.9329	AG	1.8892	0.0527	2365	0
AC078846.1--SND1	4	2	4.00	0.15	AC078846.1^ENSG00000273329.1	5675	chr7:129606956:-	SND1^ENSG00000197157.11	17029	chr7:127694828:+	INCL_NON_REF_SPLICE	YES	3	3	1.75	1.75	GT	1.9656	AG	1.8892	0.0422	2376	0
AC078846.1--SND1	3	2	3.00	0.11	AC078846.1^ENSG00000273329.1	1562	chr7:129611069:-	SND1^ENSG00000197157.11	17029	chr7:127694828:+	INCL_NON_REF_SPLICE	YES	0	3	6.00	1.50	GT	1.5219	AG	1.8892	0.0316	1268	0
KATNAL1--ZC3H13	67	0	67.00	0.00	KATNAL1^ENSG00000102781.14	1221	chr13:30307331:-	ZC3H13^ENSG00000123200.17	32091	chr13:45989097:-	ONLY_REF_SPLICE	YES	47	72	1.42	0.93	GT	1.8062	AG	1.7968	0.6813	546	0
KATNAL1--ZC3H13	8	0	8.00	0.00	KATNAL1^ENSG00000102781.14	1612	chr13:30306940:-	ZC3H13^ENSG00000123200.17	32091	chr13:45989097:-	ONLY_REF_SPLICE	YES	48	72	0.18	0.12	GT	1.2729	AG	1.7968	0.0813	286	0
KATNAL1--ZC3H13	6	0	6.00	0.00	KATNAL1^ENSG00000102781.14	1839	chr13:30306713:-	ZC3H13^ENSG00000123200.17	32091	chr13:45989097:-	ONLY_REF_SPLICE	YES	59	72	0.12	0.10	GT	1.9656	AG	1.7968	0.061	305	0
KATNAL1--ZC3H13	4	0	4.00	0.00	KATNAL1^ENSG00000102781.14	1792	chr13:30306760:-	ZC3H13^ENSG00000123200.17	32091	chr13:45989097:-	INCL_NON_REF_SPLICE	YES	53	72	0.09	0.07	GT	1.9656	AG	1.7968	0.0407	288	0
KATNAL1--ZC3H13	3	1	3.00	1.00	KATNAL1^ENSG00000102781.14	1873	chr13:30306679:-	ZC3H13^ENSG00000123200.17	32091	chr13:45989097:-	INCL_NON_REF_SPLICE	YES	58	72	0.08	0.07	GT	1.7232	AG	1.7968	0.0407	322	0
KATNAL1--ZC3H13	1	0	1.00	0.00	KATNAL1^ENSG00000102781.14	1788	chr13:30306764:-	ZC3H13^ENSG00000123200.17	32091	chr13:45989097:-	ONLY_REF_SPLICE	YES	53	72	0.04	0.03	GT	1.9899	AG	1.7968	0.0102	286	0
TRMT61B--ALK	55	2	55.00	1.31	TRMT61B^ENSG00000171103.11	1731	chr2:28869579:-	ALK^ENSG00000171094.18	22621	chr2:29297057:-	ONLY_REF_SPLICE	YES	65	8	0.88	6.44	GT	1.7465	AG	1.9329	0.5725	5174	0
TRMT61B--ALK	24	3	24.00	1.60	TRMT61B^ENSG00000171103.11	2834	chr2:28865017:-	ALK^ENSG00000171094.18	22621	chr2:29297057:-	ONLY_REF_SPLICE	YES	64	8	0.43	3.11	GT	1.9086	AG	1.9329	0.2603	5388	0
TRMT61B--ALK	4	2	4.00	0.10	TRMT61B^ENSG00000171103.11	1750	chr2:28869560:-	ALK^ENSG00000171094.18	22621	chr2:29297057:-	INCL_NON_REF_SPLICE	YES	62	8	0.11	0.78	GT	1.7819	AG	1.9329	0.0417	5176	0
PTPN3--ALK	35	2	35.00	2.00	PTPN3^ENSG00000070159.14	2250	chr9:109463297:-	ALK^ENSG00000171094.18	51926	chr2:29275496:-	ONLY_REF_SPLICE	YES	127	22	0.30	1.65	GT	1.7819	AG	1.9086	0.3762	2554	0
PTPN3--ALK	1	0	1.00	0.00	PTPN3^ENSG00000070159.14	2250	chr9:109463297:-	ALK^ENSG00000171094.18	52195	chr2:29275227:-	ONLY_REF_SPLICE	YES	127	110	0.02	0.02	GT	1.7819	AG	1.8323	0.0102	2285	0
PTCH1--LUC7L2	14	1	14.00	0.93	PTCH1^ENSG00000185920.16	5449	chr9:95506407:-	LUC7L2^ENSG00000146963.18	47136	chr7:139376062:+	ONLY_REF_SPLICE	YES	20	484	0.76	0.03	GT	1.6729	AG	1.9656	0.1519	1124	0
PTCH1--LUC7L2	1	1	1.00	0.07	PTCH1^ENSG00000185920.16	5449	chr9:95506407:-	LUC7L2^ENSG00000146963.18	45475	chr7:139374401:+	ONLY_REF_SPLICE	YES	20	446	0.14	0.01	GT	1.6729	AG	1.7968	0.0109	978	0
DELEC1--SENP7	10	0	10.00	0.00	DELEC1^ENSG00000173077.16	9192	chr9:115087454:+	SENP7^ENSG00000138468.16	35354	chr3:101459052:-	ONLY_REF_SPLICE	YES	0	71	11.00	0.15	GT	1.9329	AG	1.8323	0.1017	3579	0
DELEC1--SENP7	3	0	3.00	0.00	DELEC1^ENSG00000173077.16	8077	chr9:115084383:+	SENP7^ENSG00000138468.16	35354	chr3:101459052:-	ONLY_REF_SPLICE	YES	270	71	0.01	0.06	GT	1.9329	AG	1.8323	0.0305	2464	0
DELEC1--SENP7	1	0	1.00	0.00	DELEC1^ENSG00000173077.16	6948	chr9:115069070:+	SENP7^ENSG00000138468.16	36452	chr3:101417790:-	ONLY_REF_SPLICE	YES	2	52	0.67	0.04	GT	1.8892	AG	1.8892	0.0102	1663	0
COX7A2L--MAP4K3	6	0	6.00	0.00	COX7A2L^ENSG00000115944.15	8717	chr2:42361090:-	MAP4K3^ENSG00000011566.15	30938	chr2:39315388:-	ONLY_REF_SPLICE	YES	360	170	0.02	0.04	GT	1.8892	AG	1.7465	0.061	5650	0
COX7A2L--MAP4K3	5	1	5.00	1.00	COX7A2L^ENSG00000115944.15	16383	chr2:42333667:-	MAP4K3^ENSG00000011566.15	30938	chr2:39315388:-	INCL_NON_REF_SPLICE	YES	2	170	2.33	0.04	GT	1.5656	AG	1.7465	0.061	2144	0
GPT2--ZNF646	6	0	6.00	0.00	GPT2^ENSG00000166123.14	1597	chr16:46884958:+	ZNF646^ENSG00000167395.10	29133	chr16:31082971:+	ONLY_REF_SPLICE	YES	209	81	0.03	0.09	GT	1.8323	AG	1.7819	0.061	145	0
GPT2--ZNF646	1	0	1.00	0.00	GPT2^ENSG00000166123.14	1597	chr16:46884958:+	ZNF646^ENSG00000167395.10	22408	chr16:31076246:+	ONLY_REF_SPLICE	YES	209	16	0.01	0.12	GT	1.8323	AG	1.6729	0.0102	486	0
SND1--AC078846.1	5	0	5.00	0.00	SND1^ENSG00000197157.11	24964	chr7:127991056:+	AC078846.1^ENSG00000273329.1	45010	chr7:129607233:-	INCL_NON_REF_SPLICE	YES	6	0	0.86	6.00	GT	1.8295	AG	1.6402	0.0508	803	0
PTCH1--FMC1	4	0	4.00	0.00	PTCH1^ENSG00000185920.16	5449	chr9:95506407:-	FMC1^ENSG00000164898.13	45098	chr7:139345501:+	ONLY_REF_SPLICE	YES	20	123	0.24	0.04	GT	1.6729	AG	1.8892	0.0407	757	0
SENP7--STX17-AS1	3	0	3.00	0.00	SENP7^ENSG00000138468.16	10429	chr3:101366430:-	STX17-AS1^ENSG00000255145.3	33022	chr9:99895005:-	ONLY_REF_SPLICE	YES	35	0	0.11	4.00	GT	1.9086	AG	1.9329	0.0305	4194	0
CFTR--SND1	2	0	2.00	0.00	CFTR^ENSG00000001626.16	36080	chr7:117627770:+	SND1^ENSG00000197157.11	58732	chr7:127694828:+	ONLY_REF_SPLICE	YES	37	3	0.08	0.75	GT	1.8892	AG	1.8892	0.0203	2357	0
EGFR--SND1	2	0	2.00	0.00	EGFR^ENSG00000146648.19	1349	chr7:55019365:+	SND1^ENSG00000197157.11	67625	chr7:127990947:+	ONLY_REF_SPLICE	YES	2412	7	0.00	0.38	GT	1.2729	AG	1.9656	0.0203	2612	0
EGFR--SND1	1	0	1.00	0.00	EGFR^ENSG00000146648.19	1349	chr7:55019365:+	SND1^ENSG00000197157.11	58369	chr7:127721287:+	ONLY_REF_SPLICE	YES	2412	24	0.00	0.08	GT	1.2729	AG	1.8323	0.0102	4435	0
EGFR--SND1	1	0	1.00	0.00	EGFR^ENSG00000146648.19	26366	chr7:55181478:+	SND1^ENSG00000197157.11	67625	chr7:127990947:+	ONLY_REF_SPLICE	YES	2082	7	0.00	0.25	GT	1.9086	AG	1.9656	0.0102	1025	0
EGFR--SND1	1	0	1.00	0.00	EGFR^ENSG00000146648.19	1349	chr7:55019365:+	SND1^ENSG00000197157.11	59483	chr7:127807484:+	ONLY_REF_SPLICE	YES	2412	29	0.00	0.07	GT	1.2729	AG	1.3753	0.0102	4331	0
GLI3--CNTNAP2	2	0	2.00	0.00	GLI3^ENSG00000106571.15	6741	chr7:42223130:-	CNTNAP2^ENSG00000174469.23	86836	chr7:148229646:+	ONLY_REF_SPLICE	YES	146	0	0.02	3.00	GT	1.9329	AG	1.9656	0.0203	1734	0
PALM2AKAP2--APBA1	2	0	2.00	0.00	PALM2AKAP2^ENSG00000157654.19	2472	chr9:109514611:+	APBA1^ENSG00000107282.8	55191	chr9:69457139:-	ONLY_REF_SPLICE	YES	3	14	0.75	0.20	GT	1.9656	AG	1.9329	0.0203	3273	0
STXBP5L--DCBLD2	2	0	2.00	0.00	STXBP5L^ENSG00000145087.13	28600	chr3:121381532:+	DCBLD2^ENSG00000057019.16	49391	chr3:98825366:-	ONLY_REF_SPLICE	YES	140	1346	0.02	0.00	GT	1.9086	AG	1.6402	0.0203	1391	0
STXBP5L--DCBLD2	1	0	1.00	0.00	STXBP5L^ENSG00000145087.13	28600	chr3:121381532:+	DCBLD2^ENSG00000057019.16	46952	chr3:98881767:-	ONLY_REF_SPLICE	YES	140	1461	0.01	0.00	GT	1.9086	AG	1.7465	0.0102	2078	0
SENP7--DELEC1	1	0	1.00	0.00	SENP7^ENSG00000138468.16	6788	chr3:101398861:-	DELEC1^ENSG00000173077.16	38918	chr9:115084255:+	ONLY_REF_SPLICE	YES	62	113	0.03	0.02	GT	1.6895	AG	1.8892	0.0102	3279	0
TNC--DELEC1	1	0	1.00	0.00	TNC^ENSG00000041982.16	30084	chr9:115036098:-	DELEC1^ENSG00000173077.16	51369	chr9:115120956:+	ONLY_REF_SPLICE	YES	446	0	0.00	2.00	GT	1.8323	AG	1.5546	0.0102	1130	0