File Info
- Filename
- NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_1.FusionInspector.fusions.abridged.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0008/B23LG7FLT4/nfcore_rnafusion_100M__1bb6229e--20260226-142939/fusioninspector/NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_1.FusionInspector.fusions.abridged.tsv
- Size
- 10.7 KB
- Workflow Run
- dev_rna_exp0008_1bb6229e
- Published
- Feb 26, 2026 11:40 PM
Content
View in new tab| #FusionName | JunctionReadCount | SpanningFragCount | est_J | est_S | LeftGene | LeftLocalBreakpoint | LeftBreakpoint | RightGene | RightLocalBreakpoint | RightBreakpoint | SpliceType | LargeAnchorSupport | NumCounterFusionLeft | NumCounterFusionRight | FAR_left | FAR_right | LeftBreakDinuc | LeftBreakEntropy | RightBreakDinuc | RightBreakEntropy | FFPM | microh_brkpt_dist | num_microh_near_brkpt |
| EML4--ALK | 239 | 2 | 239.00 | 1.99 | EML4^ENSG00000143924.19 | 8520 | chr2:42264951:+ | ALK^ENSG00000171094.18 | 59003 | chr2:29223528:- | ONLY_REF_SPLICE | YES | 463 | 165 | 0.52 | 1.46 | GT | 1.2419 | AG | 1.9086 | 2.4478 | 1008 | 0 |
| EML4--ALK | 157 | 0 | 157.00 | 0.00 | EML4^ENSG00000143924.19 | 8300 | chr2:42264731:+ | ALK^ENSG00000171094.18 | 59003 | chr2:29223528:- | ONLY_REF_SPLICE | YES | 481 | 165 | 0.33 | 0.95 | GT | 1.7819 | AG | 1.9086 | 1.5947 | 1031 | 0 |
| EML4--ALK | 1 | 2 | 1.00 | 0.01 | EML4^ENSG00000143924.19 | 8520 | chr2:42264951:+ | ALK^ENSG00000171094.18 | 57853 | chr2:29224678:- | ONLY_REF_SPLICE | YES | 463 | 1 | 0.01 | 2.00 | GT | 1.2419 | AG | 1.9329 | 0.0103 | 2158 | 0 |
| STAG3L3--AC090114.3 | 237 | 6 | 237.00 | 5.25 | STAG3L3^ENSG00000174353.17 | 1230 | chr7:73005693:- | AC090114.3^ENSG00000280828.1 | 19364 | chr7:128608118:+ | ONLY_REF_SPLICE | YES | 70 | 220 | 3.44 | 1.10 | GT | 1.9899 | AG | 1.8892 | 2.4606 | 4340 | 0 |
| STAG3L3--AC090114.3 | 34 | 6 | 34.00 | 0.75 | STAG3L3^ENSG00000174353.17 | 1347 | chr7:73005576:- | AC090114.3^ENSG00000280828.1 | 19364 | chr7:128608118:+ | ONLY_REF_SPLICE | YES | 60 | 220 | 0.67 | 0.19 | GT | 1.9656 | AG | 1.8892 | 0.353 | 4226 | 0 |
| ALK--PTPN3 | 174 | 3 | 173.84 | 3.00 | ALK^ENSG00000171094.18 | 15377 | chr2:29275099:- | PTPN3^ENSG00000070159.14 | 41256 | chr9:109457399:- | ONLY_REF_SPLICE | YES | 3 | 150 | 44.50 | 1.18 | GT | 1.9086 | AG | 1.7465 | 1.7963 | 2315 | 0 |
| DCBLD2--STXBP5L | 161 | 7 | 161.00 | 6.99 | DCBLD2^ENSG00000057019.16 | 19629 | chr3:98808081:- | STXBP5L^ENSG00000145087.13 | 53865 | chr3:121318475:+ | ONLY_REF_SPLICE | YES | 1417 | 24 | 0.12 | 6.76 | GT | 1.7819 | AG | 1.9086 | 1.7064 | 4623 | 0 |
| DCBLD2--STXBP5L | 2 | 0 | 2.00 | 0.00 | DCBLD2^ENSG00000057019.16 | 6588 | chr3:98849461:- | STXBP5L^ENSG00000145087.13 | 53865 | chr3:121318475:+ | ONLY_REF_SPLICE | YES | 1989 | 24 | 0.00 | 0.12 | GT | 1.6402 | AG | 1.9086 | 0.0203 | 2425 | 0 |
| DCBLD2--STXBP5L | 1 | 1 | 1.00 | 0.01 | DCBLD2^ENSG00000057019.16 | 18535 | chr3:98811194:- | STXBP5L^ENSG00000145087.13 | 53865 | chr3:121318475:+ | ONLY_REF_SPLICE | NO | 1129 | 24 | 0.00 | 0.12 | GT | 1.7232 | AG | 1.9086 | 0.0103 | 3573 | 0 |
| DCBLD2--STXBP5L | 1 | 0 | 1.00 | 0.00 | DCBLD2^ENSG00000057019.16 | 1574 | chr3:98901122:- | STXBP5L^ENSG00000145087.13 | 58435 | chr3:121407243:+ | ONLY_REF_SPLICE | YES | 1922 | 200 | 0.00 | 0.01 | GT | 1.8256 | AG | 1.7819 | 0.0102 | 401 | 0 |
| DCBLD2--STXBP5L | 1 | 0 | 1.00 | 0.00 | DCBLD2^ENSG00000057019.16 | 6588 | chr3:98849461:- | STXBP5L^ENSG00000145087.13 | 58435 | chr3:121407243:+ | ONLY_REF_SPLICE | YES | 1989 | 200 | 0.00 | 0.01 | GT | 1.6402 | AG | 1.7819 | 0.0102 | 2628 | 0 |
| SND1--CFTR | 102 | 1 | 102.00 | 0.98 | SND1^ENSG00000197157.11 | 24964 | chr7:127991056:+ | CFTR^ENSG00000001626.16 | 75444 | chr7:117627522:+ | ONLY_REF_SPLICE | YES | 1766 | 18 | 0.06 | 5.47 | GT | 1.8295 | AG | 1.9656 | 1.0461 | 1208 | 0 |
| SND1--CFTR | 1 | 1 | 1.00 | 0.01 | SND1^ENSG00000197157.11 | 24964 | chr7:127991056:+ | CFTR^ENSG00000001626.16 | 76833 | chr7:117642438:+ | ONLY_REF_SPLICE | YES | 1766 | 33 | 0.00 | 0.09 | GT | 1.8295 | AG | 1.7465 | 0.0103 | 1635 | 0 |
| SND1--CFTR | 1 | 1 | 1.00 | 0.01 | SND1^ENSG00000197157.11 | 22748 | chr7:127929329:+ | CFTR^ENSG00000001626.16 | 75444 | chr7:117627522:+ | ONLY_REF_SPLICE | YES | 2140 | 18 | 0.00 | 0.16 | GT | 1.7819 | AG | 1.9656 | 0.0103 | 992 | 0 |
| KATNAL1--ZC3H13 | 79 | 1 | 79.00 | 0.67 | KATNAL1^ENSG00000102781.14 | 1221 | chr13:30307331:- | ZC3H13^ENSG00000123200.17 | 32091 | chr13:45989097:- | ONLY_REF_SPLICE | YES | 42 | 99 | 1.88 | 0.81 | GT | 1.8062 | AG | 1.7968 | 0.8092 | 546 | 0 |
| KATNAL1--ZC3H13 | 23 | 1 | 23.00 | 0.19 | KATNAL1^ENSG00000102781.14 | 1612 | chr13:30306940:- | ZC3H13^ENSG00000123200.17 | 32091 | chr13:45989097:- | ONLY_REF_SPLICE | YES | 48 | 99 | 0.51 | 0.25 | GT | 1.2729 | AG | 1.7968 | 0.2355 | 286 | 0 |
| KATNAL1--ZC3H13 | 7 | 3 | 7.00 | 1.61 | KATNAL1^ENSG00000102781.14 | 1873 | chr13:30306679:- | ZC3H13^ENSG00000123200.17 | 32091 | chr13:45989097:- | INCL_NON_REF_SPLICE | YES | 62 | 99 | 0.17 | 0.11 | GT | 1.7232 | AG | 1.7968 | 0.0875 | 322 | 0 |
| KATNAL1--ZC3H13 | 5 | 2 | 5.00 | 0.38 | KATNAL1^ENSG00000102781.14 | 1792 | chr13:30306760:- | ZC3H13^ENSG00000123200.17 | 32091 | chr13:45989097:- | INCL_NON_REF_SPLICE | YES | 53 | 99 | 0.15 | 0.08 | GT | 1.9656 | AG | 1.7968 | 0.0547 | 288 | 0 |
| KATNAL1--ZC3H13 | 1 | 2 | 1.00 | 0.08 | KATNAL1^ENSG00000102781.14 | 1839 | chr13:30306713:- | ZC3H13^ENSG00000123200.17 | 32091 | chr13:45989097:- | ONLY_REF_SPLICE | YES | 61 | 99 | 0.06 | 0.04 | GT | 1.9656 | AG | 1.7968 | 0.011 | 305 | 0 |
| KATNAL1--ZC3H13 | 1 | 2 | 1.00 | 0.08 | KATNAL1^ENSG00000102781.14 | 1788 | chr13:30306764:- | ZC3H13^ENSG00000123200.17 | 32091 | chr13:45989097:- | ONLY_REF_SPLICE | YES | 53 | 99 | 0.07 | 0.04 | GT | 1.9899 | AG | 1.7968 | 0.011 | 286 | 0 |
| AC078846.1--SND1 | 64 | 1 | 64.00 | 0.34 | AC078846.1^ENSG00000273329.1 | 1269 | chr7:129611362:- | SND1^ENSG00000197157.11 | 17029 | chr7:127694828:+ | INCL_NON_REF_SPLICE | YES | 7 | 2681 | 8.25 | 0.02 | GC | 1.6729 | AG | 1.8892 | 0.6536 | 1355 | 0 |
| AC078846.1--SND1 | 51 | 2 | 51.00 | 0.68 | AC078846.1^ENSG00000273329.1 | 1313 | chr7:129611318:- | SND1^ENSG00000197157.11 | 17029 | chr7:127694828:+ | INCL_NON_REF_SPLICE | YES | 9 | 2681 | 5.40 | 0.02 | GT | 1.5656 | AG | 1.8892 | 0.5249 | 1338 | 0 |
| AC078846.1--SND1 | 38 | 2 | 38.00 | 0.51 | AC078846.1^ENSG00000273329.1 | 1310 | chr7:129611321:- | SND1^ENSG00000197157.11 | 17029 | chr7:127694828:+ | INCL_NON_REF_SPLICE | YES | 9 | 2681 | 4.10 | 0.02 | GT | 1.5058 | AG | 1.8892 | 0.3912 | 1339 | 0 |
| AC078846.1--SND1 | 9 | 4 | 9.00 | 0.74 | AC078846.1^ENSG00000273329.1 | 5675 | chr7:129606956:- | SND1^ENSG00000197157.11 | 17029 | chr7:127694828:+ | INCL_NON_REF_SPLICE | YES | 1 | 2681 | 7.00 | 0.01 | GT | 1.9656 | AG | 1.8892 | 0.0989 | 2376 | 0 |
| AC078846.1--SND1 | 7 | 4 | 7.00 | 0.57 | AC078846.1^ENSG00000273329.1 | 5743 | chr7:129606888:- | SND1^ENSG00000197157.11 | 17029 | chr7:127694828:+ | INCL_NON_REF_SPLICE | YES | 2 | 2681 | 4.00 | 0.00 | GT | 1.9329 | AG | 1.8892 | 0.0769 | 2365 | 0 |
| AC078846.1--SND1 | 6 | 4 | 6.00 | 0.49 | AC078846.1^ENSG00000273329.1 | 5935 | chr7:129606696:- | SND1^ENSG00000197157.11 | 17029 | chr7:127694828:+ | INCL_NON_REF_SPLICE | YES | 4 | 2681 | 2.20 | 0.00 | GC | 1.9329 | AG | 1.8892 | 0.0659 | 2345 | 0 |
| AC078846.1--SND1 | 6 | 3 | 6.00 | 0.26 | AC078846.1^ENSG00000273329.1 | 1562 | chr7:129611069:- | SND1^ENSG00000197157.11 | 17029 | chr7:127694828:+ | INCL_NON_REF_SPLICE | YES | 0 | 2681 | 10.00 | 0.00 | GT | 1.5219 | AG | 1.8892 | 0.0635 | 1268 | 0 |
| AC078846.1--SND1 | 5 | 4 | 5.00 | 0.41 | AC078846.1^ENSG00000273329.1 | 5551 | chr7:129607080:- | SND1^ENSG00000197157.11 | 17029 | chr7:127694828:+ | INCL_NON_REF_SPLICE | YES | 0 | 2681 | 10.00 | 0.00 | GT | 1.7465 | AG | 1.8892 | 0.055 | 2399 | 0 |
| AC078846.1--SND1 | 5 | 0 | 5.00 | 0.00 | AC078846.1^ENSG00000273329.1 | 1211 | chr7:129611420:- | SND1^ENSG00000197157.11 | 17125 | chr7:127694924:+ | INCL_NON_REF_SPLICE | YES | 3 | 3456 | 1.50 | 0.00 | GC | 1.9656 | AG | 1.9656 | 0.0508 | 1466 | 0 |
| TRMT61B--ALK | 58 | 1 | 58.00 | 0.65 | TRMT61B^ENSG00000171103.11 | 1731 | chr2:28869579:- | ALK^ENSG00000171094.18 | 22621 | chr2:29297057:- | ONLY_REF_SPLICE | YES | 66 | 5 | 0.90 | 10.00 | GT | 1.7465 | AG | 1.9329 | 0.5957 | 5174 | 0 |
| TRMT61B--ALK | 27 | 1 | 27.00 | 0.30 | TRMT61B^ENSG00000171103.11 | 2834 | chr2:28865017:- | ALK^ENSG00000171094.18 | 22621 | chr2:29297057:- | ONLY_REF_SPLICE | YES | 64 | 5 | 0.45 | 4.83 | GT | 1.9086 | AG | 1.9329 | 0.2773 | 5388 | 0 |
| TRMT61B--ALK | 4 | 1 | 4.00 | 0.04 | TRMT61B^ENSG00000171103.11 | 1750 | chr2:28869560:- | ALK^ENSG00000171094.18 | 22621 | chr2:29297057:- | INCL_NON_REF_SPLICE | YES | 66 | 5 | 0.09 | 1.00 | GT | 1.7819 | AG | 1.9329 | 0.041 | 5176 | 0 |
| PTPN3--ALK | 34 | 0 | 33.16 | 0.00 | PTPN3^ENSG00000070159.14 | 2250 | chr9:109463297:- | ALK^ENSG00000171094.18 | 51926 | chr2:29275496:- | ONLY_REF_SPLICE | YES | 145 | 18 | 0.24 | 1.84 | GT | 1.7819 | AG | 1.9086 | 0.3368 | 2554 | 0 |
| PTPN3--ALK | 1 | 0 | 1.00 | 0.00 | PTPN3^ENSG00000070159.14 | 2250 | chr9:109463297:- | ALK^ENSG00000171094.18 | 52195 | chr2:29275227:- | ONLY_REF_SPLICE | YES | 145 | 114 | 0.01 | 0.02 | GT | 1.7819 | AG | 1.8323 | 0.0102 | 2285 | 0 |
| PTCH1--LUC7L2 | 16 | 0 | 16.00 | 0.00 | PTCH1^ENSG00000185920.16 | 5449 | chr9:95506407:- | LUC7L2^ENSG00000146963.18 | 47136 | chr7:139376062:+ | ONLY_REF_SPLICE | YES | 21 | 640 | 0.77 | 0.03 | GT | 1.6729 | AG | 1.9656 | 0.1625 | 1124 | 0 |
| COX7A2L--MAP4K3 | 9 | 0 | 9.00 | 0.00 | COX7A2L^ENSG00000115944.15 | 16383 | chr2:42333667:- | MAP4K3^ENSG00000011566.15 | 30938 | chr2:39315388:- | INCL_NON_REF_SPLICE | YES | 2 | 169 | 3.33 | 0.06 | GT | 1.5656 | AG | 1.7465 | 0.0914 | 2144 | 0 |
| COX7A2L--MAP4K3 | 2 | 0 | 2.00 | 0.00 | COX7A2L^ENSG00000115944.15 | 11833 | chr2:42353212:- | MAP4K3^ENSG00000011566.15 | 30938 | chr2:39315388:- | ONLY_REF_SPLICE | YES | 538 | 169 | 0.01 | 0.02 | GT | 1.9086 | AG | 1.7465 | 0.0203 | 3186 | 0 |
| COX7A2L--MAP4K3 | 2 | 0 | 2.00 | 0.00 | COX7A2L^ENSG00000115944.15 | 8717 | chr2:42361090:- | MAP4K3^ENSG00000011566.15 | 30938 | chr2:39315388:- | ONLY_REF_SPLICE | YES | 407 | 169 | 0.01 | 0.02 | GT | 1.8892 | AG | 1.7465 | 0.0203 | 5650 | 0 |
| DELEC1--SENP7 | 9 | 0 | 9.00 | 0.00 | DELEC1^ENSG00000173077.16 | 9192 | chr9:115087454:+ | SENP7^ENSG00000138468.16 | 35354 | chr3:101459052:- | ONLY_REF_SPLICE | YES | 0 | 71 | 10.00 | 0.14 | GT | 1.9329 | AG | 1.8323 | 0.0914 | 3579 | 0 |
| DELEC1--SENP7 | 7 | 0 | 7.00 | 0.00 | DELEC1^ENSG00000173077.16 | 8077 | chr9:115084383:+ | SENP7^ENSG00000138468.16 | 35354 | chr3:101459052:- | ONLY_REF_SPLICE | YES | 401 | 71 | 0.02 | 0.11 | GT | 1.9329 | AG | 1.8323 | 0.0711 | 2464 | 0 |
| SENP7--STX17-AS1 | 9 | 0 | 9.00 | 0.00 | SENP7^ENSG00000138468.16 | 10429 | chr3:101366430:- | STX17-AS1^ENSG00000255145.3 | 33022 | chr9:99895005:- | ONLY_REF_SPLICE | YES | 33 | 0 | 0.29 | 10.00 | GT | 1.9086 | AG | 1.9329 | 0.0914 | 4194 | 0 |
| APLP2--LRRC4C | 6 | 0 | 6.00 | 0.00 | APLP2^ENSG00000084234.18 | 2258 | chr11:130070082:+ | LRRC4C^ENSG00000148948.8 | 31342 | chr11:41223008:- | ONLY_REF_SPLICE | YES | 1635 | 0 | 0.00 | 7.00 | GT | 1.9086 | AG | 1.7232 | 0.0609 | 3631 | 0 |
| CEP170P1--RAD51B | 5 | 0 | 5.00 | 0.00 | CEP170P1^ENSG00000154608.14 | 6653 | chr4:118493845:+ | RAD51B^ENSG00000182185.18 | 38517 | chr14:68291884:+ | ONLY_REF_SPLICE | YES | 8 | 174 | 0.67 | 0.03 | GT | 1.7232 | AG | 1.8892 | 0.0508 | 2312 | 0 |
| GPT2--ZNF646 | 5 | 0 | 5.00 | 0.00 | GPT2^ENSG00000166123.14 | 1597 | chr16:46884958:+ | ZNF646^ENSG00000167395.10 | 29133 | chr16:31082971:+ | ONLY_REF_SPLICE | YES | 265 | 114 | 0.02 | 0.05 | GT | 1.8323 | AG | 1.7819 | 0.0508 | 145 | 0 |
| GPT2--ZNF646 | 2 | 0 | 2.00 | 0.00 | GPT2^ENSG00000166123.14 | 1597 | chr16:46884958:+ | ZNF646^ENSG00000167395.10 | 22408 | chr16:31076246:+ | ONLY_REF_SPLICE | YES | 265 | 40 | 0.01 | 0.07 | GT | 1.8323 | AG | 1.6729 | 0.0203 | 486 | 0 |
| PTCH1--FMC1 | 5 | 0 | 5.00 | 0.00 | PTCH1^ENSG00000185920.16 | 5449 | chr9:95506407:- | FMC1^ENSG00000164898.13 | 45098 | chr7:139345501:+ | ONLY_REF_SPLICE | YES | 21 | 132 | 0.27 | 0.05 | GT | 1.6729 | AG | 1.8892 | 0.0508 | 757 | 0 |
| APBA1--AL161910.1 | 4 | 0 | 4.00 | 0.00 | APBA1^ENSG00000107282.8 | 6770 | chr9:69467823:- | AL161910.1^ENSG00000285907.1 | 31016 | chr9:89600815:- | ONLY_REF_SPLICE | YES | 15 | 0 | 0.31 | 5.00 | GT | 1.8323 | AG | 1.9899 | 0.0406 | 1086 | 0 |
| APBA1--AL161910.1 | 3 | 0 | 3.00 | 0.00 | APBA1^ENSG00000107282.8 | 6770 | chr9:69467823:- | AL161910.1^ENSG00000285907.1 | 31097 | chr9:89600734:- | ONLY_REF_SPLICE | YES | 15 | 0 | 0.25 | 4.00 | GT | 1.8323 | AG | 1.9086 | 0.0305 | 1005 | 0 |
| TNC--SENP7 | 3 | 0 | 3.00 | 0.00 | TNC^ENSG00000041982.16 | 1276 | chr9:115117982:- | SENP7^ENSG00000138468.16 | 45474 | chr3:101459052:- | ONLY_REF_SPLICE | YES | 36 | 71 | 0.11 | 0.06 | GT | 1.9329 | AG | 1.8323 | 0.0305 | 92 | 1 |
| TNC--SENP7 | 1 | 0 | 1.00 | 0.00 | TNC^ENSG00000041982.16 | 1276 | chr9:115117982:- | SENP7^ENSG00000138468.16 | 47770 | chr3:101399055:- | ONLY_REF_SPLICE | YES | 36 | 56 | 0.05 | 0.04 | GT | 1.9329 | AG | 1.9656 | 0.0102 | 2195 | 0 |
| PALM2AKAP2--APBA1 | 2 | 0 | 2.00 | 0.00 | PALM2AKAP2^ENSG00000157654.19 | 2472 | chr9:109514611:+ | APBA1^ENSG00000107282.8 | 55191 | chr9:69457139:- | ONLY_REF_SPLICE | YES | 5 | 16 | 0.50 | 0.18 | GT | 1.9656 | AG | 1.9329 | 0.0203 | 3273 | 0 |
| SHC3--INTS10 | 2 | 0 | 2.00 | 0.00 | SHC3^ENSG00000148082.10 | 1832 | chr9:89177987:- | INTS10^ENSG00000104613.12 | 26331 | chr8:19818275:+ | ONLY_REF_SPLICE | YES | 9 | 480 | 0.30 | 0.01 | GT | 1.9899 | AG | 1.9656 | 0.0203 | 848 | 0 |
| SHC3--INTS10 | 1 | 0 | 1.00 | 0.00 | SHC3^ENSG00000148082.10 | 1832 | chr9:89177987:- | INTS10^ENSG00000104613.12 | 27629 | chr8:19819573:+ | ONLY_REF_SPLICE | YES | 9 | 439 | 0.20 | 0.00 | GT | 1.9899 | AG | 1.8295 | 0.0102 | 2052 | 0 |
| LRMDA--ADK | 1 | 1 | 1.00 | 1.00 | LRMDA^ENSG00000148655.15 | 2232 | chr10:75438494:+ | ADK^ENSG00000156110.15 | 39754 | chr10:74394141:+ | ONLY_REF_SPLICE | YES | 126 | 759 | 0.02 | 0.00 | GT | 1.8892 | AG | 1.9329 | 0.0204 | 2106 | 0 |
55 rows