NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:GATK4_MARKDUPLICATES (MCF7_FFPE_RNA_0001_B23LG7FLT4_3) - dev_rna_exp0008_1bb6229e - Workflow Tracker

Runs
dev_rna_exp0008_1bb6229e
Tasks
GATK4_MARKDUPLICATES (MCF7_FFPE_RNA_0001_B23LG7FLT4_3)

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Task Info

Status: succeeded
Hash: 1e2becd0daa1
Process: NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:GATK4_MARKDUPLICATES
Tag: MCF7_FFPE_RNA_0001_B23LG7FLT4_3
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: a5/d4c50c
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/biocontainers/mulled-v2-d9e7bad0f7fbc8f4458d5c3ab7ffaaf0235b59fb:f857e2d6cc88d35580d01cf39e0959a68b83c1d9-0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/d4c50c800b627b195236752ae12a34
Native ID: nf-a5d4c50c800b627b195236752ae12a34-00d9a

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.6 / 8
Memory (peak / alloc): 56.2 GB / 82.0 GB
Process I/O (rchar / wchar): 17.9 GB / 10.2 GB
Disk I/O (read / write): - / 10.2 GB
Host: i-002c45397afcdcba9 ( spot)

Runtime

Submitted: Feb 26, 2026 10:56:39 PM
Completed: Feb 26, 2026 11:11:51 PM
Total Duration: 15m 11s

Phases

Queue: 2s
Execution: 14m 17s
Stage/Unstage: 52s

Attempt 1

Execution

Status: succeeded
Hash: a9/334e39
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/biocontainers/mulled-v2-d9e7bad0f7fbc8f4458d5c3ab7ffaaf0235b59fb:f857e2d6cc88d35580d01cf39e0959a68b83c1d9-0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/334e39a87b5723b6da8751e7ed7f89
Native ID: nf-a9334e39a87b5723b6da8751e7ed7f89-3e0e3

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.6 / 8
Memory (peak / alloc): 56.8 GB / 82.0 GB
Process I/O (rchar / wchar): 17.3 GB / 9.9 GB
Disk I/O (read / write): - / 9.9 GB
Host: i-0ad77f5156746cbda ( spot)

Runtime

Submitted: Feb 26, 2026 9:59:34 PM
Completed: Feb 26, 2026 10:14:13 PM
Total Duration: 14m 38s

Phases

Queue: 3s
Execution: 13m 40s
Stage/Unstage: 55s