NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:GATK4_MARKDUPLICATES (NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_2) - dev_rna_exp0008_1bb6229e - Workflow Tracker

Runs
dev_rna_exp0008_1bb6229e
Tasks
GATK4_MARKDUPLICATES (NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_2)

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Task Info

Status: succeeded
Hash: 4a7da0202bb7
Process: NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:GATK4_MARKDUPLICATES
Tag: NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_2
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: 2e/d5d80a
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/biocontainers/mulled-v2-d9e7bad0f7fbc8f4458d5c3ab7ffaaf0235b59fb:f857e2d6cc88d35580d01cf39e0959a68b83c1d9-0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/d5d80a2f54c8e43c5a0aadee0fcaeb
Native ID: nf-2ed5d80a2f54c8e43c5a0aadee0fcaeb-0c9dd

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.6 / 8
Memory (peak / alloc): 56.7 GB / 82.0 GB
Process I/O (rchar / wchar): 17.5 GB / 10.0 GB
Disk I/O (read / write): - / 10.0 GB
Host: i-0c06f5a8f4db4e9d0 ( spot)

Runtime

Submitted: Feb 26, 2026 10:52:19 PM
Completed: Feb 26, 2026 11:07:29 PM
Total Duration: 15m 9s

Phases

Queue: 2s
Execution: 14m 13s
Stage/Unstage: 54s

Attempt 1

Execution

Status: succeeded
Hash: f0/9e286c
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/biocontainers/mulled-v2-d9e7bad0f7fbc8f4458d5c3ab7ffaaf0235b59fb:f857e2d6cc88d35580d01cf39e0959a68b83c1d9-0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/9e286caf6d8cd532dfe1145c139eaa
Native ID: nf-f09e286caf6d8cd532dfe1145c139eaa-d6882

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.6 / 8
Memory (peak / alloc): 56.2 GB / 82.0 GB
Process I/O (rchar / wchar): 18.0 GB / 10.2 GB
Disk I/O (read / write): 8.5 GB / 10.2 GB
Host: i-0abb164835f178062 ( spot)

Runtime

Submitted: Feb 26, 2026 9:55:05 PM
Completed: Feb 26, 2026 10:10:42 PM
Total Duration: 15m 36s

Phases

Queue: 2s
Execution: 14m 42s
Stage/Unstage: 52s