NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:GATK4_MARKDUPLICATES (A673_FFPE_RNA_0001_B23LG7FLT4_3) - dev_rna_exp0008_1bb6229e - Workflow Tracker

Runs
dev_rna_exp0008_1bb6229e
Tasks
GATK4_MARKDUPLICATES (A673_FFPE_RNA_0001_B23LG7FLT4_3)

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Task Info

Status: succeeded
Hash: 5bba15e54a06
Process: NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:GATK4_MARKDUPLICATES
Tag: A673_FFPE_RNA_0001_B23LG7FLT4_3
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: 19/835372
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/biocontainers/mulled-v2-d9e7bad0f7fbc8f4458d5c3ab7ffaaf0235b59fb:f857e2d6cc88d35580d01cf39e0959a68b83c1d9-0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/8353720516ea2e9b0527eb340f13b5
Native ID: nf-198353720516ea2e9b0527eb340f13b5-542dd

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.6 / 8
Memory (peak / alloc): 56.4 GB / 82.0 GB
Process I/O (rchar / wchar): 16.9 GB / 9.6 GB
Disk I/O (read / write): 220.0 KB / 9.6 GB
Host: i-0abb164835f178062 ( spot)

Runtime

Submitted: Feb 26, 2026 10:28:09 PM
Completed: Feb 26, 2026 10:44:21 PM
Total Duration: 16m 11s

Phases

Queue: 3s
Execution: 15m 18s
Stage/Unstage: 50s

Attempt 1

Execution

Status: succeeded
Hash: 04/b0163e
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/biocontainers/mulled-v2-d9e7bad0f7fbc8f4458d5c3ab7ffaaf0235b59fb:f857e2d6cc88d35580d01cf39e0959a68b83c1d9-0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/b0163ea409a1539c304a740eaa202f
Native ID: nf-04b0163ea409a1539c304a740eaa202f-4b958

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.6 / 8
Memory (peak / alloc): 56.7 GB / 82.0 GB
Process I/O (rchar / wchar): 17.3 GB / 9.8 GB
Disk I/O (read / write): - / 9.8 GB
Host: i-0e53b64db067f9eae ( spot)

Runtime

Submitted: Feb 26, 2026 9:29:55 PM
Completed: Feb 26, 2026 9:46:44 PM
Total Duration: 16m 48s

Phases

Queue: 19s
Execution: 15m 39s
Stage/Unstage: 50s