NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:GATK4_MARKDUPLICATES (NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_3) - dev_rna_exp0008_1bb6229e - Workflow Tracker

Runs
dev_rna_exp0008_1bb6229e
Tasks
GATK4_MARKDUPLICATES (NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_3)

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Task Info

Status: succeeded
Hash: 5f238272f630
Process: NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:GATK4_MARKDUPLICATES
Tag: NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_3
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: f1/704742
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/biocontainers/mulled-v2-d9e7bad0f7fbc8f4458d5c3ab7ffaaf0235b59fb:f857e2d6cc88d35580d01cf39e0959a68b83c1d9-0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/704742e58eae376f327abca79ffc5e
Native ID: nf-f1704742e58eae376f327abca79ffc5e-46841

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.6 / 8
Memory (peak / alloc): 56.7 GB / 82.0 GB
Process I/O (rchar / wchar): 17.1 GB / 9.7 GB
Disk I/O (read / write): - / 9.7 GB
Host: i-0c06f5a8f4db4e9d0 ( spot)

Runtime

Submitted: Feb 26, 2026 11:09:49 PM
Completed: Feb 26, 2026 11:24:58 PM
Total Duration: 15m 8s

Phases

Queue: 2s
Execution: 14m 16s
Stage/Unstage: 50s

Attempt 1

Execution

Status: succeeded
Hash: b7/e24684
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/biocontainers/mulled-v2-d9e7bad0f7fbc8f4458d5c3ab7ffaaf0235b59fb:f857e2d6cc88d35580d01cf39e0959a68b83c1d9-0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/e2468403fe55abed6bcc6394cd0515
Native ID: nf-b7e2468403fe55abed6bcc6394cd0515-037f5

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.6 / 8
Memory (peak / alloc): 57.1 GB / 82.0 GB
Process I/O (rchar / wchar): 17.6 GB / 10.0 GB
Disk I/O (read / write): - / 10.0 GB
Host: i-08bba56d95bf171c0 ( spot)

Runtime

Submitted: Feb 26, 2026 10:23:05 PM
Completed: Feb 26, 2026 10:38:34 PM
Total Duration: 15m 28s

Phases

Queue: 2s
Execution: 14m 30s
Stage/Unstage: 56s