NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:GATK4_MARKDUPLICATES (KG1_FFPE_01_RNA_0003_B23LG7FLT4_3) - dev_rna_exp0008_1bb6229e - Workflow Tracker

Runs
dev_rna_exp0008_1bb6229e
Tasks
GATK4_MARKDUPLICATES (KG1_FFPE_01_RNA_0003_B23LG7FLT4_3)

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Task Info

Status: succeeded
Hash: 5fa25261e50c
Process: NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:GATK4_MARKDUPLICATES
Tag: KG1_FFPE_01_RNA_0003_B23LG7FLT4_3
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: d3/ba0015
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/biocontainers/mulled-v2-d9e7bad0f7fbc8f4458d5c3ab7ffaaf0235b59fb:f857e2d6cc88d35580d01cf39e0959a68b83c1d9-0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/ba0015d68ece9fb7f2545418fe5685
Native ID: nf-d3ba0015d68ece9fb7f2545418fe5685-bfe9f

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.6 / 8
Memory (peak / alloc): 56.4 GB / 82.0 GB
Process I/O (rchar / wchar): 17.4 GB / 9.9 GB
Disk I/O (read / write): - / 9.9 GB
Host: i-0d779bfbe9fb29e48 ( spot)

Runtime

Submitted: Feb 26, 2026 10:32:49 PM
Completed: Feb 26, 2026 10:47:32 PM
Total Duration: 14m 42s

Phases

Queue: 3s
Execution: 13m 47s
Stage/Unstage: 52s

Attempt 1

Execution

Status: succeeded
Hash: e1/7bb66f
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/biocontainers/mulled-v2-d9e7bad0f7fbc8f4458d5c3ab7ffaaf0235b59fb:f857e2d6cc88d35580d01cf39e0959a68b83c1d9-0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/7bb66f054594f8cded78946dcdaad1
Native ID: nf-e17bb66f054594f8cded78946dcdaad1-0d509

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.6 / 8
Memory (peak / alloc): 56.1 GB / 82.0 GB
Process I/O (rchar / wchar): 17.7 GB / 10.0 GB
Disk I/O (read / write): - / 10.0 GB
Host: i-0849d071876139868 ( spot)

Runtime

Submitted: Feb 26, 2026 9:32:55 PM
Completed: Feb 26, 2026 9:48:29 PM
Total Duration: 15m 33s

Phases

Queue: 14s
Execution: 14m 29s
Stage/Unstage: 50s