NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:GATK4_MARKDUPLICATES (KG1_FFPE_01_RNA_0003_B23LG7FLT4_2) - dev_rna_exp0008_1bb6229e - Workflow Tracker

Runs
dev_rna_exp0008_1bb6229e
Tasks
GATK4_MARKDUPLICATES (KG1_FFPE_01_RNA_0003_B23LG7FLT4_2)

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Task Info

Status: succeeded
Hash: 7245c319090b
Process: NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:GATK4_MARKDUPLICATES
Tag: KG1_FFPE_01_RNA_0003_B23LG7FLT4_2
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: 04/fbe641
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/biocontainers/mulled-v2-d9e7bad0f7fbc8f4458d5c3ab7ffaaf0235b59fb:f857e2d6cc88d35580d01cf39e0959a68b83c1d9-0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/fbe64129a79e6b80789520d1cf1309
Native ID: nf-04fbe64129a79e6b80789520d1cf1309-5d07c

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.6 / 8
Memory (peak / alloc): 57.0 GB / 82.0 GB
Process I/O (rchar / wchar): 17.7 GB / 10.1 GB
Disk I/O (read / write): 2.1 GB / 10.1 GB
Host: i-0abb164835f178062 ( spot)

Runtime

Submitted: Feb 26, 2026 10:34:59 PM
Completed: Feb 26, 2026 10:50:56 PM
Total Duration: 15m 56s

Phases

Queue: 3s
Execution: 15m 2s
Stage/Unstage: 51s

Attempt 1

Execution

Status: succeeded
Hash: 6e/199fc8
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/biocontainers/mulled-v2-d9e7bad0f7fbc8f4458d5c3ab7ffaaf0235b59fb:f857e2d6cc88d35580d01cf39e0959a68b83c1d9-0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/199fc81b830fc9adcf013f61b492b5
Native ID: nf-6e199fc81b830fc9adcf013f61b492b5-db530

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.6 / 8
Memory (peak / alloc): 56.2 GB / 82.0 GB
Process I/O (rchar / wchar): 17.6 GB / 10.0 GB
Disk I/O (read / write): - / 10.0 GB
Host: i-0e53b64db067f9eae ( spot)

Runtime

Submitted: Feb 26, 2026 9:33:16 PM
Completed: Feb 26, 2026 9:48:34 PM
Total Duration: 15m 17s

Phases

Queue: 2s
Execution: 14m 23s
Stage/Unstage: 52s