NFCORE_RNAFUSION:RNAFUSION:ARRIBA_WORKFLOW:SAMTOOLS_SORT_FOR_ARRIBA (NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_1) - dev_rna_exp0008_1bb6229e - Workflow Tracker

Runs
dev_rna_exp0008_1bb6229e
Tasks
SAMTOOLS_SORT_FOR_ARRIBA (NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_1)

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Task Info

Status: succeeded
Hash: 78e3f589d01f
Process: NFCORE_RNAFUSION:RNAFUSION:ARRIBA_WORKFLOW:SAMTOOLS_SORT_FOR_ARRIBA
Tag: NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_1
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: 1a/db14e4
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/biocontainers/samtools:1.17--h00cdaf9_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/db14e4277ebbeb69b5721469a6a8d8
Native ID: nf-1adb14e4277ebbeb69b5721469a6a8d8-e1759

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 3.7 / 4
Memory (peak / alloc): 3.4 GB / 15.0 GB
Process I/O (rchar / wchar): 75.6 GB / 15.5 GB
Disk I/O (read / write): 75.1 GB / 15.6 GB
Host: i-0ec6d3f4f83f57259 ( spot)

Runtime

Submitted: Feb 26, 2026 9:18:45 PM
Completed: Feb 26, 2026 9:34:33 PM
Total Duration: 15m 47s

Phases

Queue: 3s
Execution: 7m 56s
Stage/Unstage: 7m 48s

Attempt 1

Execution

Status: succeeded - cached
Hash: 52/ef3a3c
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/biocontainers/samtools:1.17--h00cdaf9_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/ef3a3cb0b02cd971db8309c2015a4e
Native ID: nf-52ef3a3cb0b02cd971db8309c2015a4e-a2988

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 4.1 / 4
Memory (peak / alloc): 3.4 GB / 15.0 GB
Process I/O (rchar / wchar): 74.2 GB / 15.5 GB
Disk I/O (read / write): 73.6 GB / 15.5 GB
Host: i-0a6c53cbee916c1bc ( spot)

Runtime

Submitted: Feb 26, 2026 9:09:35 PM
Completed: Feb 26, 2026 9:26:35 PM
Total Duration: 16m 59s

Phases

Queue: 5s
Execution: 9m 4s
Stage/Unstage: 7m 50s