NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:GATK4_MARKDUPLICATES (Hs746T_FFPE_RNA_0001_23LG7FLT4_1) - dev_rna_exp0008_1bb6229e - Workflow Tracker

Runs
dev_rna_exp0008_1bb6229e
Tasks
GATK4_MARKDUPLICATES (Hs746T_FFPE_RNA_0001_23LG7FLT4_1)

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Task Info

Status: succeeded
Hash: 81a6ce80beca
Process: NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:GATK4_MARKDUPLICATES
Tag: Hs746T_FFPE_RNA_0001_23LG7FLT4_1
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: 03/dbc70c
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/biocontainers/mulled-v2-d9e7bad0f7fbc8f4458d5c3ab7ffaaf0235b59fb:f857e2d6cc88d35580d01cf39e0959a68b83c1d9-0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/03/dbc70ca8957286dbe0b015814a3afd
Native ID: nf-03dbc70ca8957286dbe0b015814a3afd-0716a

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.6 / 8
Memory (peak / alloc): 56.2 GB / 82.0 GB
Process I/O (rchar / wchar): 17.6 GB / 10.0 GB
Disk I/O (read / write): 758.5 MB / 10.0 GB
Host: i-04b35f5af73656e72 ( spot)

Runtime

Submitted: Feb 26, 2026 10:42:19 PM
Completed: Feb 26, 2026 10:57:58 PM
Total Duration: 15m 38s

Phases

Queue: 45s
Execution: 14m 0s
Stage/Unstage: 53s

Attempt 1

Execution

Status: succeeded
Hash: af/26116e
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/biocontainers/mulled-v2-d9e7bad0f7fbc8f4458d5c3ab7ffaaf0235b59fb:f857e2d6cc88d35580d01cf39e0959a68b83c1d9-0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/26116e637a82a0f01593718781a231
Native ID: nf-af26116e637a82a0f01593718781a231-e635b

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.6 / 8
Memory (peak / alloc): 57.3 GB / 82.0 GB
Process I/O (rchar / wchar): 17.5 GB / 9.9 GB
Disk I/O (read / write): 8.0 KB / 9.9 GB
Host: i-055c6fd2a9d96e6db ( spot)

Runtime

Submitted: Feb 26, 2026 9:47:05 PM
Completed: Feb 26, 2026 10:07:38 PM
Total Duration: 20m 32s

Phases

Queue: 40s
Execution: 18m 52s
Stage/Unstage: 1m 0s