NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:GATK4_MARKDUPLICATES (NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_1) - dev_rna_exp0008_1bb6229e - Workflow Tracker

Runs
dev_rna_exp0008_1bb6229e
Tasks
GATK4_MARKDUPLICATES (NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_1)

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Task Info

Status: succeeded
Hash: cadf0ed586cf
Process: NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:GATK4_MARKDUPLICATES
Tag: NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_1
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: 3c/f5f9b4
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/biocontainers/mulled-v2-d9e7bad0f7fbc8f4458d5c3ab7ffaaf0235b59fb:f857e2d6cc88d35580d01cf39e0959a68b83c1d9-0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/f5f9b40498af5067ea30da43eb6c0b
Native ID: nf-3cf5f9b40498af5067ea30da43eb6c0b-aaa67

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.6 / 8
Memory (peak / alloc): 56.5 GB / 82.0 GB
Process I/O (rchar / wchar): 17.6 GB / 10.0 GB
Disk I/O (read / write): - / 10.0 GB
Host: i-04b35f5af73656e72 ( spot)

Runtime

Submitted: Feb 26, 2026 11:16:29 PM
Completed: Feb 26, 2026 11:31:23 PM
Total Duration: 14m 53s

Phases

Queue: 2s
Execution: 13m 58s
Stage/Unstage: 53s

Attempt 1

Execution

Status: succeeded
Hash: f1/e5bda0
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/biocontainers/mulled-v2-d9e7bad0f7fbc8f4458d5c3ab7ffaaf0235b59fb:f857e2d6cc88d35580d01cf39e0959a68b83c1d9-0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/e5bda0e3751b4dfca5b73a07e133e8
Native ID: nf-f1e5bda0e3751b4dfca5b73a07e133e8-f9e70

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.6 / 8
Memory (peak / alloc): 57.4 GB / 82.0 GB
Process I/O (rchar / wchar): 17.7 GB / 10.0 GB
Disk I/O (read / write): 1.9 GB / 10.0 GB
Host: i-0b6649670b003e5fa ( spot)

Runtime

Submitted: Feb 26, 2026 10:37:15 PM
Completed: Feb 26, 2026 10:58:35 PM
Total Duration: 21m 19s

Phases

Queue: 48s
Execution: 19m 35s
Stage/Unstage: 56s