NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:GATK4_MARKDUPLICATES (A673_FFPE_RNA_0001_B23LG7FLT4_2) - dev_rna_exp0008_1bb6229e - Workflow Tracker

Runs
dev_rna_exp0008_1bb6229e
Tasks
GATK4_MARKDUPLICATES (A673_FFPE_RNA_0001_B23LG7FLT4_2)

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Task Info

Status: succeeded
Hash: e417f47a3c8f
Process: NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:GATK4_MARKDUPLICATES
Tag: A673_FFPE_RNA_0001_B23LG7FLT4_2
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: 22/be2acd
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/biocontainers/mulled-v2-d9e7bad0f7fbc8f4458d5c3ab7ffaaf0235b59fb:f857e2d6cc88d35580d01cf39e0959a68b83c1d9-0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/22/be2acd3314b56f904d6e2671f96524
Native ID: nf-22be2acd3314b56f904d6e2671f96524-75ccf

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.6 / 8
Memory (peak / alloc): 57.0 GB / 82.0 GB
Process I/O (rchar / wchar): 17.3 GB / 9.8 GB
Disk I/O (read / write): 968.5 MB / 9.8 GB
Host: i-0d779bfbe9fb29e48 ( spot)

Runtime

Submitted: Feb 26, 2026 9:23:55 PM
Completed: Feb 26, 2026 9:39:11 PM
Total Duration: 15m 15s

Phases

Queue: 20s
Execution: 14m 5s
Stage/Unstage: 50s

Attempt 1

Execution

Status: succeeded - cached
Hash: 19/12ac90
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/biocontainers/mulled-v2-d9e7bad0f7fbc8f4458d5c3ab7ffaaf0235b59fb:f857e2d6cc88d35580d01cf39e0959a68b83c1d9-0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/12ac900b830d6c4b7e2a9f8d5c6735
Native ID: nf-1912ac900b830d6c4b7e2a9f8d5c6735-72728

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.8 / 8
Memory (peak / alloc): 38.9 GB / 82.0 GB
Process I/O (rchar / wchar): 1.4 GB / 781.8 MB
Disk I/O (read / write): - / 781.9 MB
Host: i-0d088042c6aa941f4 ( spot)

Runtime

Submitted: Feb 26, 2026 3:06:12 PM
Completed: Feb 26, 2026 3:08:10 PM
Total Duration: 1m 57s

Phases

Queue: 20s
Execution: 1m 25s
Stage/Unstage: 12s