File Info
- Filename
- EndoN_FFPE_L08_RNA_01_B23LG7FLT4_1_collectinsertsize.txt
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0008/B23LG7FLT4/nfcore_rnafusion__2cae617--20260515-145204/QC/picard/EndoN_FFPE_L08_RNA_01_B23LG7FLT4_1_collectinsertsize.txt
- Size
- 4.8 KB
- Workflow Run
- dev_rna_exp0008_2cae617
- Published
- May 16, 2026 1:55 AM
Content
View in new tab## htsjdk.samtools.metrics.StringHeader # CollectInsertSizeMetrics --Histogram_FILE EndoN_FFPE_L08_RNA_01_B23LG7FLT4_1_collectinsertsize.pdf --INPUT EndoN_FFPE_L08_RNA_01_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT EndoN_FFPE_L08_RNA_01_B23LG7FLT4_1_collectinsertsize.txt --DEVIATIONS 10.0 --MINIMUM_PCT 0.05 --METRIC_ACCUMULATION_LEVEL ALL_READS --INCLUDE_DUPLICATES false --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false ## htsjdk.samtools.metrics.StringHeader # Started on: Sat May 16 08:45:30 GMT 2026 ## METRICS CLASS picard.analysis.InsertSizeMetrics MEDIAN_INSERT_SIZE MODE_INSERT_SIZE MEDIAN_ABSOLUTE_DEVIATION MIN_INSERT_SIZE MAX_INSERT_SIZE MEAN_INSERT_SIZE STANDARD_DEVIATION READ_PAIRS PAIR_ORIENTATION WIDTH_OF_10_PERCENT WIDTH_OF_20_PERCENT WIDTH_OF_30_PERCENT WIDTH_OF_40_PERCENT WIDTH_OF_50_PERCENT WIDTH_OF_60_PERCENT WIDTH_OF_70_PERCENT WIDTH_OF_80_PERCENT WIDTH_OF_90_PERCENT WIDTH_OF_95_PERCENT WIDTH_OF_99_PERCENT SAMPLE LIBRARY READ_GROUP 99 85 28 8 540748 102.881213 52.065449 36938952 FR 11 21 31 43 57 73 99 265 2267 6661 48411 ## HISTOGRAM java.lang.Integer insert_size All_Reads.fr_count 8 1 9 1 10 2 11 2 12 9 13 17 14 638 15 2409 16 3895 17 4566 18 4591 19 4842 20 5645 21 7138 22 7150 23 5176 24 5139 25 6500 26 8642 27 10760 28 12867 29 15706 30 17722 31 20668 32 23830 33 24133 34 28257 35 33007 36 36667 37 43414 38 49606 39 57710 40 65531 41 74571 42 83644 43 90733 44 97002 45 106263 46 114449 47 125841 48 133382 49 143066 50 153127 51 164617 52 176356 53 186146 54 191975 55 201368 56 208852 57 216364 58 231452 59 243984 60 250663 61 256507 62 271639 63 286244 64 292018 65 302325 66 313195 67 321356 68 331939 69 337839 70 346140 71 350963 72 362646 73 375534 74 381334 75 392384 76 400067 77 404954 78 402921 79 407518 80 413232 81 410788 82 419095 83 414636 84 422099 85 435454 86 431016 87 428147 88 425982 89 422931 90 426679 91 415461 92 410917 93 407185 94 399050 95 406508 96 398958 97 398758 98 380820 99 381374 100 367008 101 360729 102 349919 103 339548 104 330947 105 327025 106 315808 107 310728 108 300708 109 293132 110 280256 111 265396 112 261735 113 245668 114 247864 115 235672 116 226982 117 216145 118 214143 119 206650 120 193416 121 186775 122 176483 123 169799 124 161490 125 156325 126 151393 127 144715 128 138301 129 132815 130 128585 131 127753 132 119521 133 111443 134 107281 135 100985 136 94816 137 93354 138 88952 139 86302 140 81496 141 78749 142 74432 143 72827 144 67524 145 65100 146 61555 147 59837 148 55335 149 56185 150 54557 151 53608 152 47743 153 49320 154 45527 155 45920 156 42906 157 41257 158 39589 159 39503 160 35873 161 35784 162 36617 163 35287 164 35975 165 31593 166 29979 167 30238 168 30354 169 29438 170 28939 171 30803 172 28376 173 27229 174 26222 175 27823 176 26338 177 25719 178 25606 179 26017 180 25197 181 25478 182 25439 183 22182 184 22803 185 24787 186 23144 187 23003 188 22220 189 22747 190 22923 191 22049 192 20509 193 22892 194 21245 195 19443 196 18969 197 19909 198 20277 199 19469 200 19210 201 19281 202 19182 203 18720 204 20291 205 18446 206 18910 207 18810 208 18680 209 17149 210 18566 211 19502 212 16528 213 17234 214 17784 215 16780 216 16491 217 16329 218 16484 219 16057 220 14559 221 14851 222 14843 223 13684 224 13799 225 14115 226 14242 227 14539 228 14265 229 13090 230 12404 231 12822 232 13157 233 13260 234 13316 235 11845 236 11833 237 12839 238 11214 239 11687 240 11537 241 12935 242 12017 243 10930 244 11522 245 11321 246 10168 247 11937 248 11686 249 10536 250 10493 251 9938 252 9186 253 9606 254 10278 255 9395 256 9897 257 9325 258 9220 259 9687 260 9196 261 10024 262 8240 263 8401 264 7720 265 9139 266 7755 267 7695 268 9037 269 8623 270 8717 271 7257 272 7663 273 8045 274 8496 275 7704 276 8749 277 8016 278 8012 279 7732 280 8142 281 8093 282 8599 283 7945 284 8289 285 8130 286 8135 287 7280 288 8769 289 7956 290 8339 291 6813 292 7861 293 7682 294 7893 295 8063 296 8481 297 8332 298 8520 299 7326 300 8301 301 7463 302 7306 303 7383 304 7464 305 7936 306 7876 307 8277 308 7482 309 7872 310 8371 311 8588 312 8486 313 7776 314 7794 315 7060 316 6848 317 7456 318 7244 319 7211 320 8624 321 6979 322 7084 323 7735 324 8309 325 7073 326 7230 327 6606 328 7071 329 7099 330 6618 331 7396 332 7036 333 6090 334 6410 335 6911 336 6812 337 6982 338 6763 339 7012 340 6594 341 5637 342 7299 343 7035 344 7072 345 6660 346 6972 347 6185 348 7524 349 6471 350 6931 351 5549 352 7114 353 6884 354 6724 355 6562 356 5704 357 6622 358 6038 359 6308 360 5815 361 5442 362 6030 363 5869 364 6271 365 6194 366 6202 367 6136 368 6232 369 6240 370 5052 371 6857 372 6468 373 5752 374 5537 375 6536 376 5695 377 6568 378 6151 379 5292