File Info

Filename
OvarianNP_FFPE_L02_RNA_01_B23LG7FLT4_1_seqtool_mqc.tsv
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0008/B23LG7FLT4/nfcore_rnafusion__2cae617--20260515-145204/QC/seqtool/OvarianNP_FFPE_L02_RNA_01_B23LG7FLT4_1_seqtool_mqc.tsv
Size
4.7 KB
Workflow Run
dev_rna_exp0008_2cae617
Published
May 16, 2026 1:55 AM

Content

View in new tab
#id: 'seqtools_metrics'
#plot_type: 'generalstats'
#pconfig:
# reads:
# namespace: 'SeqTools (general stats)'
# title: 'Reads'
# description: 'SeqTools (general stats) — reads'
# format: '{:,.0f}'
# min: 0
# frac_unmapped:
# namespace: 'SeqTools (general stats)'
# title: 'Frac Unmapped'
# description: 'SeqTools (general stats) — frac unmapped'
# format: '{:,.2f}'
# suffix: '%'
# max: 100
# min: 0
# scale: 'RdYlGn'
# frac_dupes:
# namespace: 'SeqTools (general stats)'
# title: 'Frac Dupes'
# description: 'SeqTools (general stats) — frac dupes'
# format: '{:,.2f}'
# suffix: '%'
# max: 100
# min: 0
# scale: 'RdYlGn'
# unique_reads:
# namespace: 'SeqTools (general stats)'
# title: 'Unique Reads'
# description: 'SeqTools (general stats) — unique reads'
# format: '{:,.0f}'
# min: 0
# frac_reads_on_target:
# namespace: 'SeqTools (general stats)'
# title: 'Frac Reads On Target'
# description: 'SeqTools (general stats) — frac reads on target'
# format: '{:,.2f}'
# suffix: '%'
# max: 100
# min: 0
# scale: 'RdYlGn'
# frac_pairs_on_target:
# namespace: 'SeqTools (general stats)'
# title: 'Frac Pairs On Target'
# description: 'SeqTools (general stats) — frac pairs on target'
# format: '{:,.2f}'
# suffix: '%'
# max: 100
# min: 0
# scale: 'RdYlGn'
# frac_reads_off_target:
# namespace: 'SeqTools (general stats)'
# title: 'Frac Reads Off Target'
# description: 'SeqTools (general stats) — frac reads off target'
# format: '{:,.2f}'
# suffix: '%'
# max: 100
# min: 0
# scale: 'RdYlGn'
# frac_pairs_off_target:
# namespace: 'SeqTools (general stats)'
# title: 'Frac Pairs Off Target'
# description: 'SeqTools (general stats) — frac pairs off target'
# format: '{:,.2f}'
# suffix: '%'
# max: 100
# min: 0
# scale: 'RdYlGn'
# reads_on_target:
# namespace: 'SeqTools (general stats)'
# title: 'Reads On Target'
# description: 'SeqTools (general stats) — reads on target'
# format: '{:,.0f}'
# min: 0
# pairs_on_target:
# namespace: 'SeqTools (general stats)'
# title: 'Pairs On Target'
# description: 'SeqTools (general stats) — pairs on target'
# format: '{:,.0f}'
# min: 0
# reads_off_target:
# namespace: 'SeqTools (general stats)'
# title: 'Reads Off Target'
# description: 'SeqTools (general stats) — reads off target'
# format: '{:,.0f}'
# min: 0
# pairs_off_target:
# namespace: 'SeqTools (general stats)'
# title: 'Pairs Off Target'
# description: 'SeqTools (general stats) — pairs off target'
# format: '{:,.0f}'
# min: 0
# mean_depth:
# namespace: 'SeqTools (general stats)'
# title: 'Mean Depth'
# description: 'SeqTools (general stats) — mean depth'
# format: '{:,.2f}'
# q50_depth:
# namespace: 'SeqTools (general stats)'
# title: 'Q50 Depth'
# description: 'SeqTools (general stats) — q50 depth'
# format: '{:,.2f}'
# frac_bases_gt30x:
# namespace: 'SeqTools (general stats)'
# title: 'Frac Bases Gt30X'
# description: 'SeqTools (general stats) — frac bases gt30x'
# format: '{:,.2f}'
# suffix: '%'
# max: 100
# min: 0
# scale: 'RdYlGn'
# frac_bases_gt100x:
# namespace: 'SeqTools (general stats)'
# title: 'Frac Bases Gt100X'
# description: 'SeqTools (general stats) — frac bases gt100x'
# format: '{:,.2f}'
# suffix: '%'
# max: 100
# min: 0
# scale: 'RdYlGn'
# n_q30:
# namespace: 'SeqTools (general stats)'
# title: 'N Q30'
# description: 'SeqTools (general stats) — n q30'
# format: '{:,.2f}'
# gc_bias:
# namespace: 'SeqTools (general stats)'
# title: 'GC Bias'
# description: 'SeqTools (general stats) — Ratio of high GC (63-100%) to low GC (0-43%) reads'
# format: '{:,.3f}'
# min: 0
# scale: 'RdYlGn'
Sample reads frac_unmapped frac_dupes unique_reads frac_reads_on_target frac_pairs_on_target frac_reads_off_target frac_pairs_off_target reads_on_target pairs_on_target reads_off_target pairs_off_target mean_depth q50_depth frac_bases_gt30x frac_bases_gt100x n_q30 gc_bias
'OvarianNP_FFPE_L02_RNA_01_B23LG7FLT4_1' 24366786 0.023501 0.849933 3656644 0.314989 0.376814 0.52841 0.623186 1151801 574055 1932206 949390 1.231201 0.0 0.00312 0.000201 0.974141 0.0
135 rows