File Info

Filename
HeadNeckN_FFPE_L04_RNA_01_B23LG7FLT4_1.Log.final.out
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0008/B23LG7FLT4/nfcore_rnafusion__2cae617--20260515-145204/star_alignment/HeadNeckN_FFPE_L04_RNA_01_B23LG7FLT4_1.Log.final.out
Size
2.0 KB
Published
May 16, 2026 1:55 AM
                                 Started job on |	May 16 08:36:41
                             Started mapping on |	May 16 08:38:18
                                    Finished on |	May 16 08:47:22
       Mapping speed, Million of reads per hour |	344.04

                          Number of input reads |	51988336
                      Average input read length |	202
                                    UNIQUE READS:
                   Uniquely mapped reads number |	46618954
                        Uniquely mapped reads % |	89.67%
                          Average mapped length |	204.02
                       Number of splices: Total |	28308236
            Number of splices: Annotated (sjdb) |	27861015
                       Number of splices: GT/AG |	28062292
                       Number of splices: GC/AG |	170656
                       Number of splices: AT/AC |	13229
               Number of splices: Non-canonical |	62059
                      Mismatch rate per base, % |	0.61%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.00
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.72
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	3669652
             % of reads mapped to multiple loci |	7.06%
        Number of reads mapped to too many loci |	109816
             % of reads mapped to too many loci |	0.21%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	195998
       % of reads unmapped: too many mismatches |	0.38%
            Number of reads unmapped: too short |	720717
                 % of reads unmapped: too short |	1.39%
                Number of reads unmapped: other |	86551
                     % of reads unmapped: other |	0.17%
                                  CHIMERIC READS:
                       Number of chimeric reads |	982525
                            % of chimeric reads |	1.89%