File Info

Filename
OvarianNP_FFPE_L05_RNA_01_B23LG7FLT4_1.Log.final.out
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0008/B23LG7FLT4/nfcore_rnafusion__2cae617--20260515-145204/star_alignment/OvarianNP_FFPE_L05_RNA_01_B23LG7FLT4_1.Log.final.out
Size
2.0 KB
Published
May 16, 2026 1:55 AM
                                 Started job on |	May 16 08:36:52
                             Started mapping on |	May 16 08:38:31
                                    Finished on |	May 16 08:47:03
       Mapping speed, Million of reads per hour |	282.41

                          Number of input reads |	40165314
                      Average input read length |	187
                                    UNIQUE READS:
                   Uniquely mapped reads number |	36382590
                        Uniquely mapped reads % |	90.58%
                          Average mapped length |	187.98
                       Number of splices: Total |	15381787
            Number of splices: Annotated (sjdb) |	15152526
                       Number of splices: GT/AG |	15231324
                       Number of splices: GC/AG |	97423
                       Number of splices: AT/AC |	9107
               Number of splices: Non-canonical |	43933
                      Mismatch rate per base, % |	0.81%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.00
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.61
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	2379885
             % of reads mapped to multiple loci |	5.93%
        Number of reads mapped to too many loci |	150358
             % of reads mapped to too many loci |	0.37%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	180862
       % of reads unmapped: too many mismatches |	0.45%
            Number of reads unmapped: too short |	584781
                 % of reads unmapped: too short |	1.46%
                Number of reads unmapped: other |	91607
                     % of reads unmapped: other |	0.23%
                                  CHIMERIC READS:
                       Number of chimeric reads |	680223
                            % of chimeric reads |	1.69%