File Info
- Filename
- BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1.starfusion.starfusion.fusion_predictions.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0008/B23LG7FLT4/nfcore_rnafusion__2cae617--20260515-145204/starfusion/BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1.starfusion.starfusion.fusion_predictions.tsv
- Size
- 59.7 KB
- Workflow Run
- dev_rna_exp0008_2cae617
- Published
- May 16, 2026 1:55 AM
Content
View in new tab| #FusionName | JunctionReadCount | SpanningFragCount | est_J | est_S | SpliceType | LeftGene | LeftBreakpoint | RightGene | RightBreakpoint | JunctionReads | SpanningFrags | LargeAnchorSupport | FFPM | LeftBreakDinuc | LeftBreakEntropy | RightBreakDinuc | RightBreakEntropy | annots |
| NKX6-1--RELN | 3 | 0 | 1.50 | 0.00 | INCL_NON_REF_SPLICE | NKX6-1^ENSG00000163623.10 | chr4:84498077:- | RELN^ENSG00000189056.15 | chr7:103989387:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1418:30440:19931,&BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:3:1228:9648:28506,&BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:3:1454:36014:26026 | . | NO_LDAS | 0.1572 | GT | 0.7219 | AG | 0.9183 | ["INTERCHROMOSOMAL[chr4--chr7]"] |
| NKX6-1--C6orf223 | 3 | 0 | 1.50 | 0.00 | INCL_NON_REF_SPLICE | NKX6-1^ENSG00000163623.10 | chr4:84498077:- | C6orf223^ENSG00000181577.16 | chr6:44002762:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1418:30440:19931,&BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:3:1228:9648:28506,&BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:3:1454:36014:26026 | . | NO_LDAS | 0.1572 | GT | 0.7219 | AG | 1.2310 | ["INTERCHROMOSOMAL[chr4--chr6]"] |
| TCF4--MSANTD1 | 2 | 0 | 0.33 | 0.00 | INCL_NON_REF_SPLICE | TCF4^ENSG00000196628.20 | chr18:55588101:- | MSANTD1^ENSG00000188981.11 | chr4:3255974:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1270:21476:15279,&BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:3:2171:46272:14031 | . | NO_LDAS | 0.0346 | GT | 1.1589 | AG | 0.9183 | ["INTERCHROMOSOMAL[chr18--chr4]"] |
| TCF4--DOCK6 | 2 | 0 | 0.33 | 0.00 | INCL_NON_REF_SPLICE | TCF4^ENSG00000196628.20 | chr18:55588101:- | DOCK6^ENSG00000130158.14 | chr19:11262495:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1270:21476:15279,&BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:3:2171:46272:14031 | . | NO_LDAS | 0.0346 | GT | 1.1589 | AG | 0.9183 | ["INTERCHROMOSOMAL[chr18--chr19]"] |
| RAB8A--COL18A1 | 2 | 0 | 2.00 | 0.00 | ONLY_REF_SPLICE | RAB8A^ENSG00000167461.12 | chr19:16127526:+ | COL18A1^ENSG00000182871.16 | chr21:45491225:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1278:36378:15839,&BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:4:2373:15441:14158 | . | NO_LDAS | 0.2095 | GT | 1.2867 | AG | 1.6895 | ["INTERCHROMOSOMAL[chr19--chr21]"] |
| PER1--RPH3AL | 2 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | PER1^ENSG00000179094.16 | chr17:8142673:- | RPH3AL^ENSG00000181031.16 | chr17:321360:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1397:39856:26124,&BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:2:2208:8993:25297 | . | NO_LDAS | 0.1048 | GC | 1.8892 | AG | 1.6729 | ["INTRACHROMOSOMAL[chr17:7.75Mb]"] |
| PER1--PROSER3 | 2 | 0 | 2.00 | 0.00 | INCL_NON_REF_SPLICE | PER1^ENSG00000179094.16 | chr17:8147470:- | PROSER3^ENSG00000167595.15 | chr19:35768335:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1210:10854:29557,&BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:2:1104:30723:24260 | . | NO_LDAS | 0.2095 | GT | 1.7819 | AG | 1.6049 | ["INTERCHROMOSOMAL[chr17--chr19]"] |
| NR1H4--SYNC | 2 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | NR1H4^ENSG00000012504.15 | chr12:100563435:+ | SYNC^ENSG00000162520.15 | chr1:32680596:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:3:1147:38068:25746,&BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:4:1101:1558:11103 | . | NO_LDAS | 0.1048 | GT | 1.9329 | AG | 1.9656 | ["INTERCHROMOSOMAL[chr12--chr1]"] |
| MT-ND6--MTRNR2L7 | 2 | 0 | 0.50 | 0.00 | INCL_NON_REF_SPLICE | MT-ND6^ENSG00000198695.2 | chrM:14150:- | MTRNR2L7^ENSG00000256892.2 | chr10:37602222:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:2483:35649:22145,&BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:2:2304:38821:11888 | . | YES_LDAS | 0.0524 | GT | 1.8295 | AG | 1.3753 | ["INTERCHROMOSOMAL[chrM--chr10]"] |
| MT-ND6--MTRNR2L12 | 2 | 0 | 0.50 | 0.00 | INCL_NON_REF_SPLICE | MT-ND6^ENSG00000198695.2 | chrM:14150:- | MTRNR2L12^ENSG00000269028.3 | chr3:96617452:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:2483:35649:22145,&BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:2:2304:38821:11888 | . | YES_LDAS | 0.0524 | GT | 1.8295 | AG | 1.2419 | ["INTERCHROMOSOMAL[chrM--chr3]"] |
| HLA-C--NUMA1 | 2 | 0 | 2.00 | 0.00 | INCL_NON_REF_SPLICE | HLA-C^ENSG00000204525.17 | chr6:31269493:- | NUMA1^ENSG00000137497.18 | chr11:72013673:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:2193:7512:18361,&BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:4:1257:1348:19538 | . | NO_LDAS | 0.2095 | GT | 1.8256 | AG | 1.7819 | ["INTERCHROMOSOMAL[chr6--chr11]"] |
| GSN--LINC01142 | 2 | 0 | 2.00 | 0.00 | INCL_NON_REF_SPLICE | GSN^ENSG00000148180.21 | chr9:121318880:+ | LINC01142^ENSG00000224286.6 | chr1:170271503:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1463:26419:10416,&BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:3:2463:35512:11930 | . | NO_LDAS | 0.2095 | GT | 1.5301 | AG | 1.8295 | ["INTERCHROMOSOMAL[chr9--chr1]"] |
| FLNA--RNU6-21P | 2 | 0 | 2.00 | 0.00 | INCL_NON_REF_SPLICE | FLNA^ENSG00000196924.19 | chrX:154359990:- | RNU6-21P^ENSG00000207441.1 | chr16:62187613:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1322:49378:13667,&BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:2:2451:5992:21024 | . | YES_LDAS | 0.2095 | GT | 1.8295 | AG | 1.6402 | ["INTERCHROMOSOMAL[chrX--chr16]"] |
| CELF4--P2RX5 | 2 | 0 | 2.00 | 0.00 | INCL_NON_REF_SPLICE | CELF4^ENSG00000101489.20 | chr18:37243910:- | P2RX5^ENSG00000083454.22 | chr17:3696176:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:2412:26928:9870,&BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:2:2288:49176:5778 | . | NO_LDAS | 0.2095 | GT | 0.9183 | AG | 1.1589 | ["INTERCHROMOSOMAL[chr18--chr17]"] |
| ZUP1--FARP2 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | ZUP1^ENSG00000153975.10 | chr6:116645921:- | FARP2^ENSG00000006607.14 | chr2:241462523:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:2:2473:10773:24092 | . | NO_LDAS | 0.1048 | GT | 1.9899 | AG | 1.8323 | ["INTERCHROMOSOMAL[chr6--chr2]"] |
| ZDHHC17--NPIPB10P | 1 | 0 | 0.06 | 0.00 | ONLY_REF_SPLICE | ZDHHC17^ENSG00000186908.15 | chr12:76769201:+ | NPIPB10P^ENSG00000196796.5 | chr16:29050502:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1189:5943:8637 | . | NO_LDAS | 0.0063 | GT | 1.9329 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr12--chr16]"] |
| ZBTB44--SEPTIN9 | 1 | 0 | 1.00 | 0.00 | ONLY_REF_SPLICE | ZBTB44^ENSG00000196323.14 | chr11:130314375:- | SEPTIN9^ENSG00000184640.20 | chr17:77402059:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:2292:35116:24415 | . | YES_LDAS | 0.1048 | GT | 1.2310 | AG | 1.9086 | ["INTERCHROMOSOMAL[chr11--chr17]"] |
| ZBED6--LINC01772 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | ZBED6^ENSG00000257315.3 | chr1:203848407:+ | LINC01772^ENSG00000226029.1 | chr1:16462596:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:2:1112:27996:16512 | . | NO_LDAS | 0.1048 | GT | 1.6402 | AG | 1.9656 | ["INTRACHROMOSOMAL[chr1:187.33Mb]"] |
| Z95114.1--FOXG1 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | Z95114.1^ENSG00000279217.1 | chr22:36074848:+ | FOXG1^ENSG00000176165.12 | chr14:28767641:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:2:2204:28004:14256 | . | NO_LDAS | 0.1048 | GT | 1.0530 | AG | 1.4716 | ["INTERCHROMOSOMAL[chr22--chr14]"] |
| YBX3--OSBPL8 | 1 | 0 | 1.00 | 0.00 | ONLY_REF_SPLICE | YBX3^ENSG00000060138.13 | chr12:10722850:- | OSBPL8^ENSG00000091039.17 | chr12:76358811:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:2:1282:39282:28380 | . | YES_LDAS | 0.1048 | GT | 1.8295 | AG | 1.9656 | ["INTRACHROMOSOMAL[chr12:65.63Mb]"] |
| WWTR1--SET | 1 | 0 | 1.00 | 0.00 | ONLY_REF_SPLICE | WWTR1^ENSG00000018408.15 | chr3:149656876:- | SET^ENSG00000119335.17 | chr9:128691170:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:2253:47906:25522 | . | YES_LDAS | 0.1048 | GT | 1.9899 | AG | 1.2419 | ["INTERCHROMOSOMAL[chr3--chr9]"] |
| VMP1--RFPL3S | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | VMP1^ENSG00000062716.13 | chr17:59839911:+ | RFPL3S^ENSG00000205853.12 | chr22:32363904:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1408:42761:11677 | . | NO_LDAS | 0.1048 | GT | 1.4256 | AG | 1.5058 | ["INTERCHROMOSOMAL[chr17--chr22]"] |
| VIM-AS1--NFIX | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | VIM-AS1^ENSG00000229124.7 | chr10:17229388:- | NFIX^ENSG00000008441.18 | chr19:12995736:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:2:2230:12868:26404 | . | YES_LDAS | 0.1048 | GT | 1.2310 | AG | 1.4566 | ["INTERCHROMOSOMAL[chr10--chr19]"] |
| VEGFB--NKAIN2 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | VEGFB^ENSG00000173511.10 | chr11:64234893:+ | NKAIN2^ENSG00000188580.15 | chr6:124823495:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:3:1394:33942:1785 | . | NO_LDAS | 0.1048 | GT | 1.4716 | AG | 1.6402 | ["INTERCHROMOSOMAL[chr11--chr6]"] |
| USH1G--IKZF2 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | USH1G^ENSG00000182040.9 | chr17:74917591:- | IKZF2^ENSG00000030419.16 | chr2:213152240:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:2:1224:8718:24597 | . | NO_LDAS | 0.1048 | GT | 1.0530 | AG | 1.5546 | ["INTERCHROMOSOMAL[chr17--chr2]"] |
| UQCRQ--AC104619.4 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | UQCRQ^ENSG00000164405.11 | chr5:132867035:+ | AC104619.4^ENSG00000251228.1 | chr4:134944438:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:2154:27681:20141 | . | YES_LDAS | 0.1048 | GT | 1.5656 | AG | 1.4256 | ["INTERCHROMOSOMAL[chr5--chr4]"] |
| UBN1--ZNF254 | 1 | 0 | 1.00 | 0.00 | ONLY_REF_SPLICE | UBN1^ENSG00000118900.15 | chr16:4848210:+ | ZNF254^ENSG00000213096.11 | chr19:24126254:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1207:43149:25241 | . | YES_LDAS | 0.1048 | GT | 1.7465 | AG | 1.8295 | ["INTERCHROMOSOMAL[chr16--chr19]"] |
| UBE2E1--NDN | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | UBE2E1^ENSG00000170142.12 | chr3:23810818:+ | NDN^ENSG00000182636.8 | chr15:23686992:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:4:1331:50567:25115 | . | NO_LDAS | 0.1048 | GT | 1.0530 | AG | 1.4295 | ["INTERCHROMOSOMAL[chr3--chr15]"] |
| UBAP2--PPIAP48 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | UBAP2^ENSG00000137073.23 | chr9:33935839:- | PPIAP48^ENSG00000260187.2 | chr16:64736873:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:3:2113:31718:17380 | . | NO_LDAS | 0.1048 | GT | 1.7465 | AG | 1.7968 | ["INTERCHROMOSOMAL[chr9--chr16]"] |
| TSC1--RABGAP1 | 1 | 0 | 0.20 | 0.00 | ONLY_REF_SPLICE | TSC1^ENSG00000165699.15 | chr9:132944543:- | RABGAP1^ENSG00000011454.18 | chr9:122957011:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:3:1361:36378:27245 | . | NO_LDAS | 0.021 | GT | 1.3753 | AG | 1.5329 | ["INTRACHROMOSOMAL[chr9:9.79Mb]"] |
| TRIM41--GNB1 | 1 | 0 | 0.50 | 0.00 | ONLY_REF_SPLICE | TRIM41^ENSG00000146063.20 | chr5:181224812:+ | GNB1^ENSG00000078369.18 | chr1:1817875:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:3:2406:1979:12448 | . | NO_LDAS | 0.0524 | GT | 1.8323 | AG | 1.5656 | ["INTERCHROMOSOMAL[chr5--chr1]"] |
| TOR4A--PKD1 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | TOR4A^ENSG00000198113.3 | chr9:137279909:+ | PKD1^ENSG00000008710.20 | chr16:2100071:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:2217:14025:8819 | . | NO_LDAS | 0.1048 | GT | 1.6895 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr9--chr16]"] |
| TNFRSF21--PLEC | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | TNFRSF21^ENSG00000146072.6 | chr6:47309587:- | PLEC^ENSG00000178209.16 | chr8:143925692:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:3:1356:33344:3466 | . | NO_LDAS | 0.1048 | GC | 1.5546 | AG | 1.5850 | ["INTERCHROMOSOMAL[chr6--chr8]"] |
| TMEM259--AC104561.2 | 1 | 0 | 0.50 | 0.00 | INCL_NON_REF_SPLICE | TMEM259^ENSG00000182087.14 | chr19:1020772:- | AC104561.2^ENSG00000253483.1 | chr8:23483212:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:2:2229:33716:20701 | . | NO_LDAS | 0.0524 | GT | 1.9329 | AG | 1.5058 | ["INTERCHROMOSOMAL[chr19--chr8]"] |
| TGM2--RPL10A | 1 | 0 | 1.00 | 0.00 | ONLY_REF_SPLICE | TGM2^ENSG00000198959.12 | chr20:38147961:- | RPL10A^ENSG00000198755.11 | chr6:35470179:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:2364:14114:28955 | . | NO_LDAS | 0.1048 | GT | 1.6402 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr20--chr6]"] |
| TGIF1--MZT2A | 1 | 0 | 0.50 | 0.00 | INCL_NON_REF_SPLICE | TGIF1^ENSG00000177426.22 | chr18:3447661:+ | MZT2A^ENSG00000173272.16 | chr2:131492241:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:2255:43295:9632 | . | NO_LDAS | 0.0524 | GT | 1.5546 | AG | 1.1589 | ["INTERCHROMOSOMAL[chr18--chr2]"] |
| TGIF1--CLINT1 | 1 | 0 | 0.50 | 0.00 | INCL_NON_REF_SPLICE | TGIF1^ENSG00000177426.22 | chr18:3447661:+ | CLINT1^ENSG00000113282.14 | chr5:157859077:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:2255:43295:9632 | . | NO_LDAS | 0.0524 | GT | 1.5546 | AG | 1.1589 | ["INTERCHROMOSOMAL[chr18--chr5]"] |
| TCF7L1--ABHD11 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | TCF7L1^ENSG00000152284.5 | chr2:85304338:+ | ABHD11^ENSG00000106077.18 | chr7:73737420:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1385:7165:6661 | . | YES_LDAS | 0.1048 | GT | 1.8892 | AG | 1.9329 | ["INTERCHROMOSOMAL[chr2--chr7]"] |
| SYS1--DBNDD2 | 1 | 0 | 1.00 | 0.00 | ONLY_REF_SPLICE | SYS1^ENSG00000204070.10 | chr20:45365686:+ | DBNDD2^ENSG00000244274.8 | chr20:45408460:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:2:1126:38716:24653 | . | YES_LDAS | 0.1048 | GT | 1.7232 | AG | 1.9329 | ["INTRACHROMOSOMAL[chr20:0.03Mb]","NEIGHBORS[29259]"] |
| SYNPO2L--YY1 | 1 | 0 | 0.20 | 0.00 | INCL_NON_REF_SPLICE | SYNPO2L^ENSG00000166317.12 | chr10:73648674:- | YY1^ENSG00000100811.14 | chr14:100239719:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1364:17876:14676 | . | NO_LDAS | 0.021 | GT | 1.3383 | AG | 1.2310 | ["INTERCHROMOSOMAL[chr10--chr14]"] |
| SYNPO2L--CLUAP1 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | SYNPO2L^ENSG00000166317.12 | chr10:73648674:- | CLUAP1^ENSG00000103351.13 | chr16:3534321:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:2120:8378:25045 | . | NO_LDAS | 0.1048 | GT | 1.3383 | AG | 1.6729 | ["INTERCHROMOSOMAL[chr10--chr16]"] |
| STK3--VPS13B | 1 | 0 | 1.00 | 0.00 | ONLY_REF_SPLICE | STK3^ENSG00000104375.17 | chr8:98579664:- | VPS13B^ENSG00000132549.19 | chr8:99641811:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:3:2174:4778:18137 | . | YES_LDAS | 0.1048 | GT | 1.6402 | AG | 1.6729 | ["CCLE_StarF2019","INTRACHROMOSOMAL[chr8:0.07Mb]","LOCAL_INVERSION:-:+:[70439]"] |
| STAG2--TRIM37 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | STAG2^ENSG00000101972.19 | chrX:123961856:+ | TRIM37^ENSG00000108395.14 | chr17:59090072:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:2:1281:27163:11846 | . | YES_LDAS | 0.1048 | GT | 1.8323 | AG | 1.8295 | ["INTERCHROMOSOMAL[chrX--chr17]"] |
| SSPOP--ZMIZ1 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | SSPOP^ENSG00000197558.13 | chr7:149804036:+ | ZMIZ1^ENSG00000108175.18 | chr10:79314002:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1352:44338:9758 | . | NO_LDAS | 0.1048 | GT | 1.3383 | AG | 1.2366 | ["INTERCHROMOSOMAL[chr7--chr10]"] |
| SMUG1--WDFY1 | 1 | 0 | 1.00 | 0.00 | ONLY_REF_SPLICE | SMUG1^ENSG00000123415.15 | chr12:54188515:- | WDFY1^ENSG00000085449.15 | chr2:223882072:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1420:51425:2107 | . | NO_LDAS | 0.1048 | GT | 1.7232 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr12--chr2]"] |
| SLC35F1--SLC24A3 | 1 | 0 | 0.50 | 0.00 | INCL_NON_REF_SPLICE | SLC35F1^ENSG00000196376.11 | chr6:117907514:+ | SLC24A3^ENSG00000185052.13 | chr20:19212602:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1241:22697:21094 | . | NO_LDAS | 0.0524 | GT | 1.3383 | AG | 1.3383 | ["HGNC_GENEFAM","INTERCHROMOSOMAL[chr6--chr20]"] |
| SLC30A9--LINC00963 | 1 | 0 | 1.00 | 0.00 | ONLY_REF_SPLICE | SLC30A9^ENSG00000014824.14 | chr4:42023384:+ | LINC00963^ENSG00000204054.14 | chr9:129502397:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:2:1396:8904:18445 | . | YES_LDAS | 0.1048 | GT | 1.5546 | AG | 1.9656 | ["INTERCHROMOSOMAL[chr4--chr9]"] |
| SIK1--TSGA10 | 1 | 0 | 0.25 | 0.00 | INCL_NON_REF_SPLICE | SIK1^ENSG00000142178.9 | chr21:43418283:- | TSGA10^ENSG00000135951.16 | chr2:99154917:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:4:1161:41871:12630 | . | NO_LDAS | 0.0262 | GT | 1.2419 | AG | 1.3383 | ["INTERCHROMOSOMAL[chr21--chr2]"] |
| SHROOM1--ARX | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | SHROOM1^ENSG00000164403.15 | chr5:132825435:- | ARX^ENSG00000004848.8 | chrX:25013700:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:4:2455:2432:15419 | . | NO_LDAS | 0.1048 | GT | 1.2419 | AG | 1.4716 | ["INTERCHROMOSOMAL[chr5--chrX]"] |
| SERTAD2--APLF | 1 | 0 | 1.00 | 0.00 | ONLY_REF_SPLICE | SERTAD2^ENSG00000179833.4 | chr2:64750281:- | APLF^ENSG00000169621.10 | chr2:68490190:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1212:4697:5442 | . | YES_LDAS | 0.1048 | GT | 1.9899 | AG | 1.5546 | ["INTRACHROMOSOMAL[chr2:3.72Mb]"] |
| SEC16A--AC087392.4 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | SEC16A^ENSG00000148396.18 | chr9:136466264:- | AC087392.4^ENSG00000262434.1 | chr17:790353:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1422:42275:4755 | . | NO_LDAS | 0.1048 | GT | 1.7232 | AG | 1.8256 | ["INTERCHROMOSOMAL[chr9--chr17]"] |
| SCAF4--SCAF8 | 1 | 0 | 1.00 | 0.00 | ONLY_REF_SPLICE | SCAF4^ENSG00000156304.15 | chr21:31691817:- | SCAF8^ENSG00000213079.10 | chr6:154820177:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1413:12002:6745 | . | NO_LDAS | 0.1048 | GT | 1.7232 | AG | 1.8892 | ["HGNC_GENEFAM","INTERCHROMOSOMAL[chr21--chr6]"] |
| RRN3P3--SETD5 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | RRN3P3^ENSG00000257122.5 | chr16:22437448:- | SETD5^ENSG00000168137.18 | chr3:9397650:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1146:19817:3046 | . | YES_LDAS | 0.1048 | GT | 1.7056 | AG | 1.2310 | ["INTERCHROMOSOMAL[chr16--chr3]"] |
| RPS20--CLUAP1 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | RPS20^ENSG00000008988.11 | chr8:56072544:- | CLUAP1^ENSG00000103351.13 | chr16:3534321:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:2148:16994:13765 | . | NO_LDAS | 0.1048 | GT | 0.9056 | AG | 1.6729 | ["INTERCHROMOSOMAL[chr8--chr16]"] |
| RNF144B--ZNF516 | 1 | 0 | 1.00 | 0.00 | ONLY_REF_SPLICE | RNF144B^ENSG00000137393.10 | chr6:18399699:+ | ZNF516^ENSG00000101493.11 | chr18:76443211:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:2244:4883:14172 | . | YES_LDAS | 0.1048 | GT | 1.8892 | AG | 1.7819 | ["INTERCHROMOSOMAL[chr6--chr18]"] |
| RNF10--MATN1 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | RNF10^ENSG00000022840.16 | chr12:120575839:+ | MATN1^ENSG00000162510.6 | chr1:30713326:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:2:2257:2197:24092 | . | NO_LDAS | 0.1048 | GT | 1.5058 | AG | 1.8062 | ["INTERCHROMOSOMAL[chr12--chr1]"] |
| RNASET2--IGFBP2 | 1 | 0 | 0.17 | 0.00 | INCL_NON_REF_SPLICE | RNASET2^ENSG00000026297.16 | chr6:166956936:- | IGFBP2^ENSG00000115457.10 | chr2:216633607:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:3:2351:41361:21472 | . | NO_LDAS | 0.0178 | GC | 1.2419 | AG | 1.1589 | ["INTERCHROMOSOMAL[chr6--chr2]"] |
| RN7SL607P--RN7SL674P | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | RN7SL607P^ENSG00000278525.1 | chr20:20738613:- | RN7SL674P^ENSG00000239899.3 | chr2:11584893:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:3:1107:39622:15853 | . | YES_LDAS | 0.1048 | GT | 1.9656 | AG | 1.8892 | ["HGNC_GENEFAM","INTERCHROMOSOMAL[chr20--chr2]"] |
| RN7SKP90--RN7SKP8 | 1 | 0 | 0.12 | 0.00 | INCL_NON_REF_SPLICE | RN7SKP90^ENSG00000199883.1 | chr11:16842366:+ | RN7SKP8^ENSG00000222969.1 | chr13:98204014:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:3:1170:42275:23924 | . | NO_LDAS | 0.0126 | AT | 1.8892 | AC | 1.8892 | ["INTERCHROMOSOMAL[chr11--chr13]"] |
| RHOBTB3--TSPAN10 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | RHOBTB3^ENSG00000164292.13 | chr5:95763620:+ | TSPAN10^ENSG00000182612.10 | chr17:81646392:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:4:2413:10765:23406 | . | NO_LDAS | 0.1048 | GT | 1.3710 | AG | 1.5219 | ["INTERCHROMOSOMAL[chr5--chr17]"] |
| RFLNB--MYO1B | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | RFLNB^ENSG00000183688.4 | chr17:440920:- | MYO1B^ENSG00000128641.19 | chr2:191385975:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1275:13782:5176 | . | NO_LDAS | 0.1048 | GT | 1.9656 | AG | 1.8295 | ["INTERCHROMOSOMAL[chr17--chr2]"] |
| RCOR2--GRIN2C | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | RCOR2^ENSG00000167771.6 | chr11:63916968:- | GRIN2C^ENSG00000161509.14 | chr17:74859908:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:2:2301:27074:11551 | . | YES_LDAS | 0.1048 | GT | 0.9183 | AG | 0.9183 | ["INTERCHROMOSOMAL[chr11--chr17]"] |
| RBM14--RBM4B | 1 | 0 | 0.50 | 0.00 | ONLY_REF_SPLICE | RBM14^ENSG00000239306.5 | chr11:66617057:+ | RBM4B^ENSG00000173914.12 | chr11:66677091:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1296:17868:21556 | . | YES_LDAS | 0.0524 | GT | 1.7465 | AG | 1.9086 | ["Klijn_CellLines","HGNC_GENEFAM","INTRACHROMOSOMAL[chr11:0.04Mb]","LOCAL_INVERSION:+:-:[35064]"] |
| RBM14--RBM4 | 1 | 0 | 0.50 | 0.00 | ONLY_REF_SPLICE | RBM14^ENSG00000239306.5 | chr11:66617057:+ | RBM4^ENSG00000173933.21 | chr11:66639700:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1296:17868:21556 | . | YES_LDAS | 0.0524 | GT | 1.7465 | AG | 1.9086 | ["HGNC_GENEFAM","Greger_Normal","INTRACHROMOSOMAL[chr11:0.01Mb]","NEIGHBORS[8733]"] |
| RANBP2--GCC2 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | RANBP2^ENSG00000153201.16 | chr2:108751973:+ | GCC2^ENSG00000135968.21 | chr2:108499581:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1160:10012:4671 | . | NO_LDAS | 0.1048 | GC | 1.8892 | GG | 1.6402 | ["ChimerKB","chimerdb_omim","GTEx_recurrent_StarF2019","INTRACHROMOSOMAL[chr2:0.21Mb]"] |
| PTPN2--NPIPB10P | 1 | 0 | 0.06 | 0.00 | ONLY_REF_SPLICE | PTPN2^ENSG00000175354.20 | chr18:12869025:- | NPIPB10P^ENSG00000196796.5 | chr16:29050502:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1189:5943:8637 | . | NO_LDAS | 0.0063 | GT | 1.9329 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr18--chr16]"] |
| PTMA--PKD1P4 | 1 | 0 | 1.00 | 0.00 | ONLY_REF_SPLICE | PTMA^ENSG00000187514.17 | chr2:231711419:+ | PKD1P4^ENSG00000205746.9 | chr16:18348015:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:3:1323:47509:10991 | . | YES_LDAS | 0.1048 | GT | 1.9656 | AG | 1.7232 | ["INTERCHROMOSOMAL[chr2--chr16]"] |
| PSMD4--ARID3A | 1 | 0 | 0.50 | 0.00 | INCL_NON_REF_SPLICE | PSMD4^ENSG00000159352.16 | chr1:151266587:+ | ARID3A^ENSG00000116017.11 | chr19:932476:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:2:1452:42356:26418 | . | NO_LDAS | 0.0524 | GT | 1.9329 | AG | 1.6895 | ["INTERCHROMOSOMAL[chr1--chr19]"] |
| PPP2R5B--BRPF3 | 1 | 0 | 0.25 | 0.00 | INCL_NON_REF_SPLICE | PPP2R5B^ENSG00000068971.14 | chr11:64925790:+ | BRPF3^ENSG00000096070.19 | chr6:36196763:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:2314:30609:13667 | . | NO_LDAS | 0.0262 | GT | 1.3710 | AG | 1.7465 | ["INTERCHROMOSOMAL[chr11--chr6]"] |
| POGLUT3--CNOT6 | 1 | 0 | 0.25 | 0.00 | ONLY_REF_SPLICE | POGLUT3^ENSG00000178202.13 | chr11:108478024:- | CNOT6^ENSG00000113300.13 | chr5:180549931:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1126:47501:5176 | . | NO_LDAS | 0.0262 | GT | 1.9329 | AG | 1.6402 | ["INTERCHROMOSOMAL[chr11--chr5]"] |
| PODN--TMEM131L | 1 | 0 | 0.50 | 0.00 | INCL_NON_REF_SPLICE | PODN^ENSG00000174348.14 | chr1:53079022:+ | TMEM131L^ENSG00000121210.16 | chr4:153555873:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:4:1485:37235:26628 | . | NO_LDAS | 0.0524 | GT | 1.8295 | AG | 1.9086 | ["INTERCHROMOSOMAL[chr1--chr4]"] |
| PODN--APOB | 1 | 0 | 0.50 | 0.00 | INCL_NON_REF_SPLICE | PODN^ENSG00000174348.14 | chr1:53079022:+ | APOB^ENSG00000084674.15 | chr2:21029981:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:4:1485:37235:26628 | . | NO_LDAS | 0.0524 | GT | 1.8295 | AG | 1.9329 | ["INTERCHROMOSOMAL[chr1--chr2]"] |
| PNPLA7--CSNK1E | 1 | 0 | 1.00 | 0.00 | ONLY_REF_SPLICE | PNPLA7^ENSG00000130653.16 | chr9:137493013:- | CSNK1E^ENSG00000213923.13 | chr22:38314169:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:2244:5037:7572 | . | NO_LDAS | 0.1048 | GT | 1.8892 | AG | 1.9086 | ["INTERCHROMOSOMAL[chr9--chr22]"] |
| PMFBP1--CSRNP1 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | PMFBP1^ENSG00000118557.16 | chr16:72164896:- | CSRNP1^ENSG00000144655.15 | chr3:39144247:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1492:45802:17563 | . | NO_LDAS | 0.1048 | GT | 1.2729 | AG | 1.7465 | ["INTERCHROMOSOMAL[chr16--chr3]"] |
| PKN1--SEPTIN4 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | PKN1^ENSG00000123143.13 | chr19:14433457:+ | SEPTIN4^ENSG00000108387.15 | chr17:58526802:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:3:2240:16654:8356 | . | NO_LDAS | 0.1048 | GC | 1.2729 | AG | 1.3753 | ["INTERCHROMOSOMAL[chr19--chr17]"] |
| PHC3--NLRP3 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | PHC3^ENSG00000173889.16 | chr3:170136419:- | NLRP3^ENSG00000162711.18 | chr1:247425406:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:3:2471:39792:11747 | . | NO_LDAS | 0.1048 | GT | 1.9219 | AG | 1.5301 | ["INTERCHROMOSOMAL[chr3--chr1]"] |
| PFKP--PFKM | 1 | 0 | 1.00 | 0.00 | ONLY_REF_SPLICE | PFKP^ENSG00000067057.18 | chr10:3120044:+ | PFKM^ENSG00000152556.17 | chr12:48142782:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:2374:23676:17801 | . | NO_LDAS | 0.1048 | GT | 1.7056 | AG | 1.9219 | ["INTERCHROMOSOMAL[chr10--chr12]"] |
| PDLIM1--EEF1A1 | 1 | 0 | 1.00 | 0.00 | ONLY_REF_SPLICE | PDLIM1^ENSG00000107438.9 | chr10:95290820:- | EEF1A1^ENSG00000156508.19 | chr6:73520056:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:3:1154:41223:25634 | . | YES_LDAS | 0.1048 | GT | 1.7465 | AG | 1.9329 | ["INTERCHROMOSOMAL[chr10--chr6]"] |
| PDHA2--PRKAR2A | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | PDHA2^ENSG00000163114.6 | chr4:95841042:+ | PRKAR2A^ENSG00000114302.16 | chr3:48752345:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1329:40075:9015 | . | NO_LDAS | 0.1048 | GT | 1.9656 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr4--chr3]"] |
| PDE4DIPP2--AC239804.1 | 1 | 0 | 0.50 | 0.00 | INCL_NON_REF_SPLICE | PDE4DIPP2^ENSG00000275131.3 | chr1:120489811:- | AC239804.1^ENSG00000254539.1 | chr1:149050820:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1128:17860:6016 | . | YES_LDAS | 0.0524 | GT | 1.3383 | AG | 1.5546 | ["INTRACHROMOSOMAL[chr1:28.35Mb]"] |
| PCSK4--PLXND1 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | PCSK4^ENSG00000115257.15 | chr19:1481587:- | PLXND1^ENSG00000004399.13 | chr3:129556200:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:2321:12682:18627 | . | NO_LDAS | 0.1048 | GT | 0.9968 | AG | 1.3753 | ["INTERCHROMOSOMAL[chr19--chr3]"] |
| PCBP1-AS1--CNOT6 | 1 | 0 | 0.25 | 0.00 | ONLY_REF_SPLICE | PCBP1-AS1^ENSG00000179818.14 | chr2:70071617:- | CNOT6^ENSG00000113300.13 | chr5:180549931:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1126:47501:5176 | . | NO_LDAS | 0.0262 | GT | 1.9329 | AG | 1.6402 | ["INTERCHROMOSOMAL[chr2--chr5]"] |
| PANK2--MAVS | 1 | 0 | 1.00 | 0.00 | ONLY_REF_SPLICE | PANK2^ENSG00000125779.23 | chr20:3889728:+ | MAVS^ENSG00000088888.18 | chr20:3854558:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:2:1189:26678:25550 | . | YES_LDAS | 0.1048 | GT | 1.5656 | AG | 1.5628 | ["Klijn_CellLines","CCLE_StarF2019","INTRACHROMOSOMAL[chr20:0.01Mb]","LOCAL_REARRANGEMENT:+:[12716]"] |
| PACSIN1--BRPF3 | 1 | 0 | 0.25 | 0.00 | INCL_NON_REF_SPLICE | PACSIN1^ENSG00000124507.11 | chr6:34466187:+ | BRPF3^ENSG00000096070.19 | chr6:36196763:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:2314:30609:13667 | . | NO_LDAS | 0.0262 | GT | 1.7232 | AG | 1.7465 | ["INTRACHROMOSOMAL[chr6:1.66Mb]"] |
| NUP50--GARRE1 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | NUP50^ENSG00000093000.19 | chr22:45178885:+ | GARRE1^ENSG00000166398.14 | chr19:34300558:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1116:27632:10304 | . | NO_LDAS | 0.1048 | GT | 1.6895 | AG | 1.6895 | ["INTERCHROMOSOMAL[chr22--chr19]"] |
| NRN1--NPAS2 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | NRN1^ENSG00000124785.9 | chr6:6004017:- | NPAS2^ENSG00000170485.17 | chr2:100820245:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:2:1467:13912:24401 | . | NO_LDAS | 0.1048 | GT | 1.6895 | AG | 0.9710 | ["INTERCHROMOSOMAL[chr6--chr2]"] |
| NRIP3--DIPK2B | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | NRIP3^ENSG00000175352.11 | chr11:9003966:- | DIPK2B^ENSG00000147113.17 | chrX:45163554:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1338:25618:5358 | . | NO_LDAS | 0.1048 | GT | 1.3383 | AG | 1.9329 | ["INTERCHROMOSOMAL[chr11--chrX]"] |
| NPRL3--TWIST1 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | NPRL3^ENSG00000103148.17 | chr16:138314:- | TWIST1^ENSG00000122691.13 | chr7:19117466:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:3:1473:30124:2625 | . | NO_LDAS | 0.1048 | GT | 1.3710 | AG | 1.4566 | ["INTERCHROMOSOMAL[chr16--chr7]"] |
| NOCT--ASAH1 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | NOCT^ENSG00000151014.6 | chr4:139015960:+ | ASAH1^ENSG00000104763.20 | chr8:18056445:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1347:42032:5652 | . | NO_LDAS | 0.1048 | GT | 1.2310 | AG | 1.9656 | ["INTERCHROMOSOMAL[chr4--chr8]"] |
| NHS--KMT5A | 1 | 0 | 0.25 | 0.00 | INCL_NON_REF_SPLICE | NHS^ENSG00000188158.16 | chrX:17376108:+ | KMT5A^ENSG00000183955.13 | chr12:123389465:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1464:14704:6941 | . | NO_LDAS | 0.0262 | GT | 0.9710 | AG | 0.9183 | ["INTERCHROMOSOMAL[chrX--chr12]"] |
| NEAT1--UGP2 | 1 | 0 | 0.50 | 0.00 | INCL_NON_REF_SPLICE | NEAT1^ENSG00000245532.9 | chr11:65425533:+ | UGP2^ENSG00000169764.16 | chr2:63887994:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:4:1352:38376:4699 | . | NO_LDAS | 0.0524 | GT | 1.8256 | AG | 1.8062 | ["INTERCHROMOSOMAL[chr11--chr2]"] |
| MTMR3--REC114 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | MTMR3^ENSG00000100330.16 | chr22:30008032:+ | REC114^ENSG00000183324.11 | chr15:73560001:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:2146:15077:4475 | . | NO_LDAS | 0.1048 | GT | 1.9086 | AG | 1.7465 | ["INTERCHROMOSOMAL[chr22--chr15]"] |
| MTG1--SCART1 | 1 | 0 | 1.00 | 0.00 | ONLY_REF_SPLICE | MTG1^ENSG00000148824.19 | chr10:133419592:+ | SCART1^ENSG00000214279.13 | chr10:133456237:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:2:1201:19025:27511 | . | YES_LDAS | 0.1048 | GT | 1.8323 | AG | 1.8892 | ["INTRACHROMOSOMAL[chr10:0.03Mb]","NEIGHBORS[31408]"] |
| MT-ND6--NFE2L1 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | MT-ND6^ENSG00000198695.2 | chrM:14338:- | NFE2L1^ENSG00000082641.16 | chr17:48051581:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:3:1251:43108:4629 | . | NO_LDAS | 0.1048 | GT | 1.4566 | AG | 1.6895 | ["INTERCHROMOSOMAL[chrM--chr17]"] |
| MT-ND6--ANO6 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | MT-ND6^ENSG00000198695.2 | chrM:14529:- | ANO6^ENSG00000177119.17 | chr12:45430874:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:4:2211:21460:7235 | . | YES_LDAS | 0.1048 | GT | 1.5058 | AG | 1.8892 | ["INTERCHROMOSOMAL[chrM--chr12]"] |
| MRTFB--MAP4K3 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | MRTFB^ENSG00000186260.17 | chr16:14218998:+ | MAP4K3^ENSG00000011566.15 | chr2:39288189:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1180:42008:29515 | . | NO_LDAS | 0.1048 | GT | 1.7819 | AG | 1.7056 | ["INTERCHROMOSOMAL[chr16--chr2]"] |
| MRPS33--HOXB3 | 1 | 0 | 0.25 | 0.00 | INCL_NON_REF_SPLICE | MRPS33^ENSG00000090263.16 | chr7:141014931:- | HOXB3^ENSG00000120093.12 | chr17:48551178:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1430:30173:3438 | . | NO_LDAS | 0.0262 | GT | 1.5546 | AG | 1.5546 | ["INTERCHROMOSOMAL[chr7--chr17]"] |
| MREG--RSRC1 | 1 | 0 | 1.00 | 0.00 | ONLY_REF_SPLICE | MREG^ENSG00000118242.16 | chr2:215947023:- | RSRC1^ENSG00000174891.13 | chr3:158460935:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:4:1344:40228:15026 | . | YES_LDAS | 0.1048 | GT | 1.7819 | AG | 1.7968 | ["INTERCHROMOSOMAL[chr2--chr3]"] |
| MIR4706--UGP2 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | MIR4706^ENSG00000266531.1 | chr14:65044708:+ | UGP2^ENSG00000169764.16 | chr2:63841128:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:2:1287:14122:7249 | . | NO_LDAS | 0.1048 | GT | 1.1589 | AG | 0.9968 | ["INTERCHROMOSOMAL[chr14--chr2]"] |
| MINDY2--GPER1 | 1 | 0 | 0.50 | 0.00 | INCL_NON_REF_SPLICE | MINDY2^ENSG00000128923.11 | chr15:58772024:+ | GPER1^ENSG00000164850.15 | chr7:1086952:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:3:2284:37462:5946 | . | NO_LDAS | 0.0524 | GT | 1.3753 | AG | 1.4716 | ["INTERCHROMOSOMAL[chr15--chr7]"] |
| MGRN1--TPM1 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | MGRN1^ENSG00000102858.13 | chr16:4687624:+ | TPM1^ENSG00000140416.23 | chr15:63071090:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:2483:33514:17408 | . | NO_LDAS | 0.1048 | GC | 0.9710 | AG | 1.9086 | ["INTERCHROMOSOMAL[chr16--chr15]"] |
| MAZ--ZFAS1 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | MAZ^ENSG00000103495.14 | chr16:29806893:+ | ZFAS1^ENSG00000177410.13 | chr20:49278216:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:4:1473:48464:18529 | . | NO_LDAS | 0.1048 | GT | 1.9656 | AG | 1.5628 | ["INTERCHROMOSOMAL[chr16--chr20]"] |
| LTBP4--JRK | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | LTBP4^ENSG00000090006.18 | chr19:40608369:+ | JRK^ENSG00000234616.9 | chr8:142680873:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:2:2209:14373:27609 | . | NO_LDAS | 0.1048 | GT | 1.8892 | AG | 1.6402 | ["INTERCHROMOSOMAL[chr19--chr8]"] |
| LTBP3--POR | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | LTBP3^ENSG00000168056.17 | chr11:65551402:- | POR^ENSG00000127948.16 | chr7:75915386:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:2:1413:15651:20547 | . | NO_LDAS | 0.1048 | GT | 1.3753 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr11--chr7]"] |
| LRRC24--IGFN1 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | LRRC24^ENSG00000254402.7 | chr8:144524525:- | IGFN1^ENSG00000163395.17 | chr1:201206574:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:2:1163:38724:5274 | . | NO_LDAS | 0.1048 | GT | 1.6895 | AG | 1.7465 | ["HGNC_GENEFAM","INTERCHROMOSOMAL[chr8--chr1]"] |
| LPCAT3--DAXX | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | LPCAT3^ENSG00000111684.11 | chr12:6976264:- | DAXX^ENSG00000204209.13 | chr6:33320122:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1446:24833:16301 | . | NO_LDAS | 0.1048 | GT | 0.9056 | AG | 0.9968 | ["INTERCHROMOSOMAL[chr12--chr6]"] |
| LONRF2--UBTF | 1 | 0 | 0.25 | 0.00 | INCL_NON_REF_SPLICE | LONRF2^ENSG00000170500.13 | chr2:100322056:- | UBTF^ENSG00000108312.15 | chr17:44221242:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1252:1097:16385 | . | NO_LDAS | 0.0262 | GT | 1.1589 | AG | 1.0530 | ["INTERCHROMOSOMAL[chr2--chr17]"] |
| LINC01558--PFKP | 1 | 0 | 0.33 | 0.00 | INCL_NON_REF_SPLICE | LINC01558^ENSG00000146521.10 | chr6:167787542:- | PFKP^ENSG00000067057.18 | chr10:3104809:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1307:20958:14886 | . | NO_LDAS | 0.0346 | GT | 1.3996 | AG | 1.3383 | ["INTERCHROMOSOMAL[chr6--chr10]"] |
| LEPROTL1--SMG1P1 | 1 | 0 | 0.33 | 0.00 | ONLY_REF_SPLICE | LEPROTL1^ENSG00000104660.19 | chr8:30104991:+ | SMG1P1^ENSG00000237296.9 | chr16:22451620:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:2460:16687:2107 | . | NO_LDAS | 0.0346 | GC | 1.8892 | AG | 1.9656 | ["INTERCHROMOSOMAL[chr8--chr16]"] |
| LARS1--ZNRD1ASP | 1 | 0 | 0.50 | 0.00 | INCL_NON_REF_SPLICE | LARS1^ENSG00000133706.19 | chr5:146153971:- | ZNRD1ASP^ENSG00000204623.9 | chr6:30035028:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:2:1388:49378:27792 | . | NO_LDAS | 0.0524 | GT | 1.9329 | AG | 1.7465 | ["INTERCHROMOSOMAL[chr5--chr6]"] |
| LAMA5--COX11 | 1 | 0 | 0.50 | 0.00 | INCL_NON_REF_SPLICE | LAMA5^ENSG00000130702.15 | chr20:62324832:- | COX11^ENSG00000166260.13 | chr17:54951981:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1382:11088:14270 | . | NO_LDAS | 0.0524 | GT | 1.9656 | AG | 1.7232 | ["INTERCHROMOSOMAL[chr20--chr17]"] |
| KMT5B--ZFAND3 | 1 | 0 | 1.00 | 0.00 | ONLY_REF_SPLICE | KMT5B^ENSG00000110066.15 | chr11:68176526:- | ZFAND3^ENSG00000156639.12 | chr6:38061593:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:2309:26653:27609 | . | NO_LDAS | 0.1048 | GT | 1.7819 | AG | 1.6402 | ["INTERCHROMOSOMAL[chr11--chr6]"] |
| KIFC1--AC010642.2 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | KIFC1^ENSG00000237649.8 | chr6:33409752:+ | AC010642.2^ENSG00000283103.3 | chr19:58311357:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:3:2327:33975:11789 | . | NO_LDAS | 0.1048 | GT | 0.9968 | AG | 1.7056 | ["INTERCHROMOSOMAL[chr6--chr19]"] |
| KIAA0753--CARD8 | 1 | 0 | 1.00 | 0.00 | ONLY_REF_SPLICE | KIAA0753^ENSG00000198920.11 | chr17:6589779:- | CARD8^ENSG00000105483.18 | chr19:48234543:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1248:15829:6367 | . | YES_LDAS | 0.1048 | GT | 1.9086 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr17--chr19]"] |
| JUND--CCDC13 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | JUND^ENSG00000130522.6 | chr19:18280504:- | CCDC13^ENSG00000244607.7 | chr3:42739711:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:4:1485:11905:3298 | . | NO_LDAS | 0.1048 | GT | 1.7465 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr19--chr3]"] |
| JUN--TTBK2 | 1 | 0 | 0.33 | 0.00 | INCL_NON_REF_SPLICE | JUN^ENSG00000177606.8 | chr1:58782423:- | TTBK2^ENSG00000128881.17 | chr15:42920653:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1243:8855:27273 | . | NO_LDAS | 0.0346 | GT | 1.6729 | AG | 1.2310 | ["INTERCHROMOSOMAL[chr1--chr15]"] |
| JUN--SAMD1 | 1 | 0 | 0.33 | 0.00 | INCL_NON_REF_SPLICE | JUN^ENSG00000177606.8 | chr1:58782423:- | SAMD1^ENSG00000141858.12 | chr19:14090066:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1243:8855:27273 | . | NO_LDAS | 0.0346 | GT | 1.6729 | AG | 1.2310 | ["INTERCHROMOSOMAL[chr1--chr19]"] |
| JUN--KLHL14 | 1 | 0 | 0.33 | 0.00 | INCL_NON_REF_SPLICE | JUN^ENSG00000177606.8 | chr1:58782423:- | KLHL14^ENSG00000197705.10 | chr18:32770336:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1243:8855:27273 | . | NO_LDAS | 0.0346 | GT | 1.6729 | AG | 1.5058 | ["INTERCHROMOSOMAL[chr1--chr18]"] |
| JPH3--MAN1C1 | 1 | 0 | 0.50 | 0.00 | INCL_NON_REF_SPLICE | JPH3^ENSG00000154118.13 | chr16:87602562:+ | MAN1C1^ENSG00000117643.15 | chr1:25617588:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1111:28668:26558 | . | NO_LDAS | 0.0524 | GC | 1.1589 | AG | 1.2310 | ["INTERCHROMOSOMAL[chr16--chr1]"] |
| IRX1--IRX2 | 1 | 0 | 1.00 | 0.00 | ONLY_REF_SPLICE | IRX1^ENSG00000170549.4 | chr5:3600260:+ | IRX2^ENSG00000170561.13 | chr5:2749787:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1124:50066:17801 | . | YES_LDAS | 0.1048 | GT | 1.5546 | AG | 1.7465 | ["DGD_PARALOGS","HGNC_GENEFAM","INTRACHROMOSOMAL[chr5:0.84Mb]"] |
| IGF2--SUGP2 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | IGF2^ENSG00000167244.21 | chr11:2139262:- | SUGP2^ENSG00000064607.17 | chr19:19033865:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1431:25893:22593 | . | NO_LDAS | 0.1048 | GC | 1.4295 | AG | 1.2419 | ["INTERCHROMOSOMAL[chr11--chr19]"] |
| HLA-C--MUC16 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | HLA-C^ENSG00000204525.17 | chr6:31269489:- | MUC16^ENSG00000181143.15 | chr19:8848985:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:2306:28862:20253 | . | NO_LDAS | 0.1048 | GT | 1.9656 | AG | 1.8062 | ["GTEx_recurrent_StarF2019","INTERCHROMOSOMAL[chr6--chr19]"] |
| HLA-B--ZNF843 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | HLA-B^ENSG00000234745.13 | chr6:31354629:- | ZNF843^ENSG00000176723.10 | chr16:31435913:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:2281:29388:13009 | . | NO_LDAS | 0.1048 | GT | 1.9656 | AG | 1.9086 | ["INTERCHROMOSOMAL[chr6--chr16]"] |
| HLA-A--C12orf40 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | HLA-A^ENSG00000206503.13 | chr6:29942951:+ | C12orf40^ENSG00000180116.15 | chr12:39716794:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1491:15570:8721 | . | NO_LDAS | 0.1048 | AT | 1.5656 | AC | 1.7056 | ["INTERCHROMOSOMAL[chr6--chr12]"] |
| HERC2--ERMP1 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | HERC2^ENSG00000128731.18 | chr15:28117105:- | ERMP1^ENSG00000099219.14 | chr9:5832467:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:2298:28797:11341 | . | NO_LDAS | 0.1048 | GT | 1.4566 | AG | 1.7968 | ["INTERCHROMOSOMAL[chr15--chr9]"] |
| HERC1--CLIP4 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | HERC1^ENSG00000103657.14 | chr15:63616511:- | CLIP4^ENSG00000115295.20 | chr2:29121374:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:2253:42138:17464 | . | NO_LDAS | 0.1048 | GT | 1.6402 | AG | 1.9086 | ["INTERCHROMOSOMAL[chr15--chr2]"] |
| GTF2E2--TGFB1 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | GTF2E2^ENSG00000197265.9 | chr8:30658137:- | TGFB1^ENSG00000105329.11 | chr19:41353715:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:2:1230:2731:21850 | . | NO_LDAS | 0.1048 | GT | 1.2419 | AG | 0.8366 | ["INTERCHROMOSOMAL[chr8--chr19]"] |
| GTF2A1--NOTCH2NLC | 1 | 0 | 0.33 | 0.00 | INCL_NON_REF_SPLICE | GTF2A1^ENSG00000165417.12 | chr14:81220931:- | NOTCH2NLC^ENSG00000286219.1 | chr1:149390804:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:4:2308:49378:27203 | . | NO_LDAS | 0.0346 | GT | 1.1589 | AG | 0.9183 | ["INTERCHROMOSOMAL[chr14--chr1]"] |
| GRAMD1A--SHISAL2B | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | GRAMD1A^ENSG00000089351.15 | chr19:35022042:+ | SHISAL2B^ENSG00000145642.12 | chr5:64690512:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:3:1363:18086:23308 | . | NO_LDAS | 0.1048 | GT | 1.9329 | AG | 1.7819 | ["INTERCHROMOSOMAL[chr19--chr5]"] |
| GPSM1--ABCE1 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | GPSM1^ENSG00000160360.13 | chr9:136356543:+ | ABCE1^ENSG00000164163.11 | chr4:145129102:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:3:2209:28555:5652 | . | NO_LDAS | 0.1048 | GT | 1.7819 | AG | 1.5656 | ["INTERCHROMOSOMAL[chr9--chr4]"] |
| GNAS--LBX1 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | GNAS^ENSG00000087460.28 | chr20:58895672:+ | LBX1^ENSG00000138136.6 | chr10:101229317:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:3:1116:39832:3943 | . | YES_LDAS | 0.1048 | GT | 1.9656 | AG | 0.9968 | ["INTERCHROMOSOMAL[chr20--chr10]"] |
| GINS4--ZFR2 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | GINS4^ENSG00000147536.12 | chr8:41542168:+ | ZFR2^ENSG00000105278.12 | chr19:3805581:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1283:21015:13499 | . | YES_LDAS | 0.1048 | GT | 1.8295 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr8--chr19]"] |
| GAREM1--AC011825.4 | 1 | 0 | 1.00 | 0.00 | ONLY_REF_SPLICE | GAREM1^ENSG00000141441.16 | chr18:32287031:- | AC011825.4^ENSG00000265008.1 | chr18:32091502:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:3:1341:28644:14746 | . | YES_LDAS | 0.1048 | GT | 1.8323 | AG | 1.8062 | ["INTRACHROMOSOMAL[chr18:0.03Mb]","NEIGHBORS[32758]"] |
| GACAT2--LCMT2 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | GACAT2^ENSG00000265962.1 | chr18:8707539:- | LCMT2^ENSG00000168806.8 | chr15:43326756:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1147:50349:28436 | . | NO_LDAS | 0.1048 | GT | 1.4566 | AG | 1.7056 | ["INTERCHROMOSOMAL[chr18--chr15]"] |
| FOXJ2--BRPF3 | 1 | 0 | 0.25 | 0.00 | INCL_NON_REF_SPLICE | FOXJ2^ENSG00000065970.9 | chr12:8033577:+ | BRPF3^ENSG00000096070.19 | chr6:36196760:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:2314:30609:13667 | . | NO_LDAS | 0.0262 | GT | 1.1033 | AG | 1.8323 | ["INTERCHROMOSOMAL[chr12--chr6]"] |
| FLNA--MTRNR2L12 | 1 | 0 | 0.50 | 0.00 | INCL_NON_REF_SPLICE | FLNA^ENSG00000196924.19 | chrX:154366732:- | MTRNR2L12^ENSG00000269028.3 | chr3:96617732:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:3:2422:32276:10781 | . | NO_LDAS | 0.0524 | GT | 1.5058 | AG | 1.7819 | ["INTERCHROMOSOMAL[chrX--chr3]"] |
| FIZ1--REC8 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | FIZ1^ENSG00000179943.8 | chr19:55599555:- | REC8^ENSG00000100918.13 | chr14:24177998:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:4:1452:19405:25732 | . | NO_LDAS | 0.1048 | GC | 1.2419 | AG | 1.0530 | ["INTERCHROMOSOMAL[chr19--chr14]"] |
| FGGY--C11orf80 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | FGGY^ENSG00000172456.18 | chr1:59378837:+ | C11orf80^ENSG00000173715.18 | chr11:66815758:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1437:5490:20183 | . | NO_LDAS | 0.1048 | GT | 1.9329 | AG | 1.7465 | ["INTERCHROMOSOMAL[chr1--chr11]"] |
| FBN1--LRP8 | 1 | 0 | 0.50 | 0.00 | ONLY_REF_SPLICE | FBN1^ENSG00000166147.14 | chr15:48513549:- | LRP8^ENSG00000157193.18 | chr1:53271153:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:2293:9454:5078 | . | NO_LDAS | 0.0524 | GT | 1.7819 | AG | 1.9329 | ["INTERCHROMOSOMAL[chr15--chr1]"] |
| FBN1--ACAN | 1 | 0 | 0.50 | 0.00 | ONLY_REF_SPLICE | FBN1^ENSG00000166147.14 | chr15:48513549:- | ACAN^ENSG00000157766.19 | chr15:88868216:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:2293:9454:5078 | . | NO_LDAS | 0.0524 | GT | 1.7819 | AG | 1.9899 | ["INTRACHROMOSOMAL[chr15:40.16Mb]"] |
| FAM228B--RAB15 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | FAM228B^ENSG00000219626.9 | chr2:24167683:+ | RAB15^ENSG00000139998.16 | chr14:64947157:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:4:2169:18280:29585 | . | NO_LDAS | 0.1048 | GT | 0.9968 | AG | 1.8323 | ["INTERCHROMOSOMAL[chr2--chr14]"] |
| FAM124A--GSE1 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | FAM124A^ENSG00000150510.17 | chr13:51251772:+ | GSE1^ENSG00000131149.19 | chr16:85657277:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:2114:9834:29473 | . | NO_LDAS | 0.1048 | GT | 1.5058 | AG | 1.7056 | ["INTERCHROMOSOMAL[chr13--chr16]"] |
| EYA3--RTL8B | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | EYA3^ENSG00000158161.16 | chr1:28017154:- | RTL8B^ENSG00000212747.5 | chrX:135021072:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1402:4681:8721 | . | NO_LDAS | 0.1048 | GT | 1.8323 | AG | 1.9329 | ["INTERCHROMOSOMAL[chr1--chrX]"] |
| EXTL3--BCL11B | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | EXTL3^ENSG00000012232.9 | chr8:28701640:+ | BCL11B^ENSG00000127152.18 | chr14:99271339:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:4:1296:22325:26418 | . | NO_LDAS | 0.1048 | GT | 0.9183 | AG | 1.1589 | ["INTERCHROMOSOMAL[chr8--chr14]"] |
| ESRRB--AC016526.2 | 1 | 0 | 1.00 | 0.00 | ONLY_REF_SPLICE | ESRRB^ENSG00000119715.15 | chr14:76310916:+ | AC016526.2^ENSG00000258454.1 | chr14:76252051:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1273:40787:5484 | . | YES_LDAS | 0.1048 | GT | 1.7465 | AG | 1.6895 | ["INTRACHROMOSOMAL[chr14:0.05Mb]","LOCAL_REARRANGEMENT:+:[47238]"] |
| ESAM--AC092849.2 | 1 | 0 | 1.00 | 0.00 | ONLY_REF_SPLICE | ESAM^ENSG00000149564.12 | chr11:124762085:- | AC092849.2^ENSG00000286938.1 | chr7:100483022:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1493:37324:4895 | . | YES_LDAS | 0.1048 | GT | 1.7819 | AG | 1.8256 | ["INTERCHROMOSOMAL[chr11--chr7]"] |
| ERMP1--CMSS1 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | ERMP1^ENSG00000099219.14 | chr9:5832537:- | CMSS1^ENSG00000184220.12 | chr3:100176255:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:3:2443:41086:20519 | . | NO_LDAS | 0.1048 | GT | 1.7819 | AG | 1.2310 | ["INTERCHROMOSOMAL[chr9--chr3]"] |
| ERGIC3--EPB42 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | ERGIC3^ENSG00000125991.20 | chr20:35555075:+ | EPB42^ENSG00000166947.15 | chr15:43215311:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:2:1173:15166:7684 | . | NO_LDAS | 0.1048 | GT | 1.9656 | AG | 1.6895 | ["INTERCHROMOSOMAL[chr20--chr15]"] |
| EHMT1--CACNA1B | 1 | 0 | 1.00 | 0.00 | ONLY_REF_SPLICE | EHMT1^ENSG00000181090.21 | chr9:137818138:+ | CACNA1B^ENSG00000148408.13 | chr9:137913180:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1177:32058:5106 | . | YES_LDAS | 0.1048 | GT | 1.9219 | AG | 1.8892 | ["INTRACHROMOSOMAL[chr9:0.01Mb]","NEIGHBORS[7766]"] |
| EDN3--PARPBP | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | EDN3^ENSG00000124205.18 | chr20:59300568:+ | PARPBP^ENSG00000185480.12 | chr12:102195951:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1161:24251:11089 | . | NO_LDAS | 0.1048 | GT | 1.4256 | AG | 1.9329 | ["INTERCHROMOSOMAL[chr20--chr12]"] |
| EBPL--FRY | 1 | 0 | 1.00 | 0.00 | ONLY_REF_SPLICE | EBPL^ENSG00000123179.14 | chr13:49691254:- | FRY^ENSG00000073910.23 | chr13:32078834:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1319:39840:12084 | . | YES_LDAS | 0.1048 | GT | 1.8256 | AG | 1.7819 | ["INTRACHROMOSOMAL[chr13:17.36Mb]"] |
| DNAJB14--SYNPO2 | 1 | 0 | 1.00 | 0.00 | ONLY_REF_SPLICE | DNAJB14^ENSG00000164031.17 | chr4:99946439:- | SYNPO2^ENSG00000172403.11 | chr4:119023430:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:2493:38764:9239 | . | YES_LDAS | 0.1048 | GT | 1.3996 | AG | 1.9219 | ["INTRACHROMOSOMAL[chr4:18.90Mb]"] |
| DHX38--AC114801.3 | 1 | 0 | 0.20 | 0.00 | INCL_NON_REF_SPLICE | DHX38^ENSG00000140829.12 | chr16:72107717:+ | AC114801.3^ENSG00000249072.1 | chr4:78008537:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:2:1453:41191:20197 | . | NO_LDAS | 0.021 | GT | 1.9899 | AG | 1.2419 | ["INTERCHROMOSOMAL[chr16--chr4]"] |
| DDX5--AC097717.1 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | DDX5^ENSG00000108654.16 | chr17:64504685:- | AC097717.1^ENSG00000232732.11 | chr2:199909202:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:2115:49904:23013 | . | NO_LDAS | 0.1048 | GC | 1.9086 | AG | 1.7232 | ["INTERCHROMOSOMAL[chr17--chr2]"] |
| DCTN3--PLA2G4F | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | DCTN3^ENSG00000137100.16 | chr9:34616030:- | PLA2G4F^ENSG00000168907.13 | chr15:42147022:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:4:1212:18474:7502 | . | NO_LDAS | 0.1048 | GT | 1.9656 | AG | 1.7819 | ["INTERCHROMOSOMAL[chr9--chr15]"] |
| DACH1--TXNDC5 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | DACH1^ENSG00000276644.5 | chr13:71866472:- | TXNDC5^ENSG00000239264.9 | chr6:7910659:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:2189:35237:10865 | . | NO_LDAS | 0.1048 | GT | 1.1589 | AG | 1.1589 | ["INTERCHROMOSOMAL[chr13--chr6]"] |
| CYP27A1--GPR139 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | CYP27A1^ENSG00000135929.9 | chr2:218781952:+ | GPR139^ENSG00000180269.8 | chr16:20073635:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:2:1295:28255:22985 | . | NO_LDAS | 0.1048 | GT | 1.4256 | AG | 1.2419 | ["INTERCHROMOSOMAL[chr2--chr16]"] |
| CXCR5--RAB11FIP4 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | CXCR5^ENSG00000160683.5 | chr11:118897018:+ | RAB11FIP4^ENSG00000131242.18 | chr17:31534840:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1468:12286:28955 | . | NO_LDAS | 0.1048 | GT | 1.7465 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr11--chr17]"] |
| CSK--EPS15L1 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | CSK^ENSG00000103653.16 | chr15:74802665:+ | EPS15L1^ENSG00000127527.14 | chr19:16471991:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:3:2421:32357:16554 | . | NO_LDAS | 0.1048 | GT | 1.2366 | AG | 1.1033 | ["INTERCHROMOSOMAL[chr15--chr19]"] |
| CREB3L2--RIMBP3 | 1 | 0 | 0.33 | 0.00 | INCL_NON_REF_SPLICE | CREB3L2^ENSG00000182158.15 | chr7:138001676:- | RIMBP3^ENSG00000275793.1 | chr22:18607254:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:3:1163:3540:21738 | . | NO_LDAS | 0.0346 | GT | 1.3710 | AG | 1.2729 | ["INTERCHROMOSOMAL[chr7--chr22]"] |
| COQ8B--NUMBL | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | COQ8B^ENSG00000123815.13 | chr19:40691592:- | NUMBL^ENSG00000105245.9 | chr19:40686995:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:2222:8815:15545 | . | YES_LDAS | 0.1048 | GT | 1.7465 | AG | 1.3996 | ["INTRACHROMOSOMAL[chr19:0.00Mb]","NEIGHBORS[542]"] |
| COL6A2--AC012349.1 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | COL6A2^ENSG00000142173.16 | chr21:46116403:+ | AC012349.1^ENSG00000254254.6 | chr8:56555565:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:3:1324:26257:8707 | . | NO_LDAS | 0.1048 | GT | 1.6895 | AG | 1.7819 | ["INTERCHROMOSOMAL[chr21--chr8]"] |
| COL6A1--SPINDOC | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | COL6A1^ENSG00000142156.15 | chr21:45999218:+ | SPINDOC^ENSG00000168005.9 | chr11:63827025:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:4:1279:46838:22018 | . | NO_LDAS | 0.1048 | GT | 1.3996 | AG | 1.4566 | ["INTERCHROMOSOMAL[chr21--chr11]"] |
| COL6A1--AC006548.3 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | COL6A1^ENSG00000142156.15 | chr21:45999218:+ | AC006548.3^ENSG00000285045.1 | chr22:16956249:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:3:1281:39484:6647 | . | NO_LDAS | 0.1048 | GT | 1.3996 | AG | 1.5656 | ["INTERCHROMOSOMAL[chr21--chr22]"] |
| CNIH2--ADAMTS2 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | CNIH2^ENSG00000174871.11 | chr11:66278396:+ | ADAMTS2^ENSG00000087116.16 | chr5:179136008:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:2:2448:51134:12252 | . | NO_LDAS | 0.1048 | GT | 0.9183 | AG | 1.5546 | ["INTERCHROMOSOMAL[chr11--chr5]"] |
| CFD--CALCOCO2 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | CFD^ENSG00000197766.8 | chr19:861005:+ | CALCOCO2^ENSG00000136436.15 | chr17:48831596:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:2:1111:2675:16287 | . | NO_LDAS | 0.1048 | GT | 1.8892 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr19--chr17]"] |
| CD74--TBX5-AS1 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | CD74^ENSG00000019582.16 | chr5:150406259:- | TBX5-AS1^ENSG00000255399.4 | chr12:114412478:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1143:45544:7502 | . | NO_LDAS | 0.1048 | GT | 1.9219 | AG | 1.9329 | ["INTERCHROMOSOMAL[chr5--chr12]"] |
| CCER2--SSH1 | 1 | 0 | 0.50 | 0.00 | INCL_NON_REF_SPLICE | CCER2^ENSG00000262484.1 | chr19:38909116:- | SSH1^ENSG00000084112.15 | chr12:108787841:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:2:2314:18927:6241 | . | NO_LDAS | 0.0524 | GT | 1.2419 | AG | 1.2729 | ["INTERCHROMOSOMAL[chr19--chr12]"] |
| CCDC88C--NAP1L1P3 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | CCDC88C^ENSG00000015133.19 | chr14:91384436:- | NAP1L1P3^ENSG00000213371.4 | chr3:120806737:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:2:1222:3775:9421 | . | YES_LDAS | 0.1048 | GT | 1.5329 | AG | 1.7819 | ["INTERCHROMOSOMAL[chr14--chr3]"] |
| CCDC198--NPIPB10P | 1 | 0 | 0.06 | 0.00 | ONLY_REF_SPLICE | CCDC198^ENSG00000100557.10 | chr14:57475582:- | NPIPB10P^ENSG00000196796.5 | chr16:29050502:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1189:5943:8637 | . | NO_LDAS | 0.0063 | GT | 1.9329 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr14--chr16]"] |
| CALM1--BCL11B | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | CALM1^ENSG00000198668.13 | chr14:90398519:+ | BCL11B^ENSG00000127152.18 | chr14:99271339:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:2:2187:14745:4461 | . | NO_LDAS | 0.1048 | GT | 1.3383 | AG | 1.1589 | ["INTRACHROMOSOMAL[chr14:8.76Mb]"] |
| CACNA1I--BEND3 | 1 | 0 | 0.50 | 0.00 | INCL_NON_REF_SPLICE | CACNA1I^ENSG00000100346.18 | chr22:39679208:+ | BEND3^ENSG00000178409.14 | chr6:107069768:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1218:11695:6549 | . | NO_LDAS | 0.0524 | GT | 1.8295 | AG | 1.8256 | ["INTERCHROMOSOMAL[chr22--chr6]"] |
| CAB39--ZFX | 1 | 0 | 1.00 | 0.00 | ONLY_REF_SPLICE | CAB39^ENSG00000135932.11 | chr2:230713230:+ | ZFX^ENSG00000005889.16 | chrX:24179183:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:2290:26750:6507 | . | YES_LDAS | 0.1048 | GT | 1.1589 | AG | 1.9656 | ["INTERCHROMOSOMAL[chr2--chrX]"] |
| C10orf71--ILF3 | 1 | 0 | 0.50 | 0.00 | INCL_NON_REF_SPLICE | C10orf71^ENSG00000177354.12 | chr10:49325741:+ | ILF3^ENSG00000129351.17 | chr19:10681275:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:2:1343:31087:16287 | . | NO_LDAS | 0.0524 | GT | 1.5219 | AG | 1.1589 | ["INTERCHROMOSOMAL[chr10--chr19]"] |
| BRI3--MBD3 | 1 | 0 | 1.00 | 0.00 | ONLY_REF_SPLICE | BRI3^ENSG00000164713.10 | chr7:98282453:+ | MBD3^ENSG00000071655.18 | chr19:1585214:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:2:1162:49411:16357 | . | YES_LDAS | 0.1048 | GT | 1.8256 | AG | 1.5656 | ["INTERCHROMOSOMAL[chr7--chr19]"] |
| BRD1--KIN | 1 | 0 | 0.50 | 0.00 | INCL_NON_REF_SPLICE | BRD1^ENSG00000100425.18 | chr22:49804200:- | KIN^ENSG00000151657.12 | chr10:7775768:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:2:2172:49823:7039 | . | NO_LDAS | 0.0524 | GT | 1.9329 | AG | 1.3383 | ["INTERCHROMOSOMAL[chr22--chr10]"] |
| BRD1--ADCY10P1 | 1 | 0 | 0.50 | 0.00 | INCL_NON_REF_SPLICE | BRD1^ENSG00000100425.18 | chr22:49804200:- | ADCY10P1^ENSG00000161912.18 | chr6:41117601:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:2:2172:49823:7039 | . | NO_LDAS | 0.0524 | GT | 1.9329 | AG | 1.4256 | ["INTERCHROMOSOMAL[chr22--chr6]"] |
| BORCS5--TTC17 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | BORCS5^ENSG00000165714.11 | chr12:12357509:+ | TTC17^ENSG00000052841.15 | chr11:43397449:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1194:6445:26432 | . | NO_LDAS | 0.1048 | GT | 1.9329 | AG | 1.9086 | ["INTERCHROMOSOMAL[chr12--chr11]"] |
| BICRAL--UBTF | 1 | 0 | 0.25 | 0.00 | INCL_NON_REF_SPLICE | BICRAL^ENSG00000112624.12 | chr6:42782051:+ | UBTF^ENSG00000108312.15 | chr17:44221242:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1252:1097:16385 | . | NO_LDAS | 0.0262 | GT | 1.1589 | AG | 1.0530 | ["INTERCHROMOSOMAL[chr6--chr17]"] |
| ANTXR1--C2CD2L | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | ANTXR1^ENSG00000169604.21 | chr2:69245499:+ | C2CD2L^ENSG00000172375.14 | chr11:119107246:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1193:23385:16259 | . | NO_LDAS | 0.1048 | GC | 1.9656 | AG | 1.0530 | ["INTERCHROMOSOMAL[chr2--chr11]"] |
| ANKRD17--ANKHD1 | 1 | 0 | 1.00 | 0.00 | ONLY_REF_SPLICE | ANKRD17^ENSG00000132466.19 | chr4:73146764:- | ANKHD1^ENSG00000131503.21 | chr5:140482580:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:2:1301:36426:6171 | . | YES_LDAS | 0.1048 | GT | 1.8892 | AG | 1.8295 | ["HGNC_GENEFAM","INTERCHROMOSOMAL[chr4--chr5]"] |
| ANKRD11--MPRIP | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | ANKRD11^ENSG00000167522.16 | chr16:89285021:- | MPRIP^ENSG00000133030.22 | chr17:17190129:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:2155:31791:18740 | . | YES_LDAS | 0.1048 | GT | 1.8323 | AG | 1.9656 | ["INTERCHROMOSOMAL[chr16--chr17]"] |
| ANK2--TRPV5 | 1 | 0 | 0.50 | 0.00 | INCL_NON_REF_SPLICE | ANK2^ENSG00000145362.20 | chr4:113353217:+ | TRPV5^ENSG00000127412.7 | chr7:142925713:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1243:1461:2499 | . | NO_LDAS | 0.0524 | GT | 1.9086 | AG | 1.7465 | ["HGNC_GENEFAM","INTERCHROMOSOMAL[chr4--chr7]"] |
| ANK2--CGNL1 | 1 | 0 | 0.50 | 0.00 | INCL_NON_REF_SPLICE | ANK2^ENSG00000145362.20 | chr4:113353217:+ | CGNL1^ENSG00000128849.11 | chr15:57545639:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1243:1461:2499 | . | NO_LDAS | 0.0524 | GT | 1.9086 | AG | 1.7465 | ["INTERCHROMOSOMAL[chr4--chr15]"] |
| AL590822.3--RELN | 1 | 0 | 0.33 | 0.00 | INCL_NON_REF_SPLICE | AL590822.3^ENSG00000287356.1 | chr1:2315177:+ | RELN^ENSG00000189056.15 | chr7:103989387:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:3:2209:37146:7081 | . | NO_LDAS | 0.0346 | GT | 0.7219 | AG | 0.9183 | ["INTERCHROMOSOMAL[chr1--chr7]"] |
| AL590822.3--HDGFL3 | 1 | 0 | 0.33 | 0.00 | INCL_NON_REF_SPLICE | AL590822.3^ENSG00000287356.1 | chr1:2315177:+ | HDGFL3^ENSG00000166503.9 | chr15:83207712:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:3:2209:37146:7081 | . | NO_LDAS | 0.0346 | GT | 0.7219 | AG | 0.9710 | ["INTERCHROMOSOMAL[chr1--chr15]"] |
| AL590822.3--C6orf223 | 1 | 0 | 0.33 | 0.00 | INCL_NON_REF_SPLICE | AL590822.3^ENSG00000287356.1 | chr1:2315177:+ | C6orf223^ENSG00000181577.16 | chr6:44002762:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:3:2209:37146:7081 | . | NO_LDAS | 0.0346 | GT | 0.7219 | AG | 1.2310 | ["INTERCHROMOSOMAL[chr1--chr6]"] |
| AL158825.3--QKI | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | AL158825.3^ENSG00000278040.1 | chr9:75016827:- | QKI^ENSG00000112531.17 | chr6:163415221:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:3:1103:26953:2822 | . | NO_LDAS | 0.1048 | GT | 1.7232 | AG | 1.5058 | ["INTERCHROMOSOMAL[chr9--chr6]"] |
| AL139095.2--CALM1 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | AL139095.2^ENSG00000220472.1 | chr6:7339204:- | CALM1^ENSG00000198668.13 | chr14:90397126:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1419:2157:10290 | . | YES_LDAS | 0.1048 | GT | 1.7819 | AG | 1.5850 | ["INTERCHROMOSOMAL[chr6--chr14]"] |
| AL118508.1--HERC1 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | AL118508.1^ENSG00000230387.4 | chr20:23181015:+ | HERC1^ENSG00000103657.14 | chr15:63640445:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:2:2307:5458:22845 | . | NO_LDAS | 0.1048 | GT | 1.7819 | AG | 1.7465 | ["INTERCHROMOSOMAL[chr20--chr15]"] |
| AL031595.2--CASKIN2 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | AL031595.2^ENSG00000280011.1 | chr22:44214786:- | CASKIN2^ENSG00000177303.10 | chr17:75502899:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:3:2140:50122:10276 | . | NO_LDAS | 0.1048 | GT | 1.9086 | AG | 1.4566 | ["INTERCHROMOSOMAL[chr22--chr17]"] |
| AJM1--RPS6KB2 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | AJM1^ENSG00000232434.2 | chr9:136845887:+ | RPS6KB2^ENSG00000175634.15 | chr11:67433227:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:2:2170:19130:22397 | . | NO_LDAS | 0.1048 | GT | 0.9710 | AG | 1.3996 | ["INTERCHROMOSOMAL[chr9--chr11]"] |
| AHNAK--DIRC3 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | AHNAK^ENSG00000124942.14 | chr11:62535941:- | DIRC3^ENSG00000231672.8 | chr2:217284810:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:2193:16387:4671 | . | NO_LDAS | 0.1048 | GT | 1.6402 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr11--chr2]"] |
| AGAP1--DIP2A | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | AGAP1^ENSG00000157985.19 | chr2:236125893:+ | DIP2A^ENSG00000160305.18 | chr21:46556851:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:3:1291:36774:23083 | . | NO_LDAS | 0.1048 | GT | 1.2419 | AG | 1.9329 | ["INTERCHROMOSOMAL[chr2--chr21]"] |
| ADGRB1--SLC4A7 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | ADGRB1^ENSG00000181790.11 | chr8:142464546:+ | SLC4A7^ENSG00000033867.16 | chr3:27379327:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1193:35051:11103 | . | NO_LDAS | 0.1048 | GT | 1.7968 | AG | 1.7232 | ["INTERCHROMOSOMAL[chr8--chr3]"] |
| ACACB--KRT3 | 1 | 0 | 0.50 | 0.00 | INCL_NON_REF_SPLICE | ACACB^ENSG00000076555.15 | chr12:109222912:+ | KRT3^ENSG00000186442.7 | chr12:52795959:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:2:2125:38028:23209 | . | NO_LDAS | 0.0524 | GT | 1.7819 | AG | 1.7968 | ["INTRACHROMOSOMAL[chr12:56.32Mb]"] |
| AC244517.5--CNOT6 | 1 | 0 | 0.25 | 0.00 | ONLY_REF_SPLICE | AC244517.5^ENSG00000279047.4 | chr5:141062411:- | CNOT6^ENSG00000113300.13 | chr5:180549931:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1126:47501:5176 | . | NO_LDAS | 0.0262 | GT | 1.9329 | AG | 1.6402 | ["INTRACHROMOSOMAL[chr5:39.40Mb]"] |
| AC116050.1--MYO10 | 1 | 0 | 0.25 | 0.00 | INCL_NON_REF_SPLICE | AC116050.1^ENSG00000278131.1 | chr2:91589810:+ | MYO10^ENSG00000145555.15 | chr5:16685746:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:2316:4018:9590 | . | NO_LDAS | 0.0262 | GT | 1.8892 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr2--chr5]"] |
| AC099778.1--SLC6A8 | 1 | 0 | 0.50 | 0.00 | INCL_NON_REF_SPLICE | AC099778.1^ENSG00000260236.1 | chr3:47380520:- | SLC6A8^ENSG00000130821.17 | chrX:153688033:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:3:2311:16153:1266 | . | NO_LDAS | 0.0524 | GT | 1.9329 | AG | 0.9183 | ["INTERCHROMOSOMAL[chr3--chrX]"] |
| AC099778.1--MEX3C | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | AC099778.1^ENSG00000260236.1 | chr3:47380520:- | MEX3C^ENSG00000176624.12 | chr18:51197260:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:3:2369:50495:27119 | . | NO_LDAS | 0.1048 | GT | 1.9329 | AG | 0.8366 | ["INTERCHROMOSOMAL[chr3--chr18]"] |
| AC090403.1--UTRN | 1 | 0 | 0.50 | 0.00 | INCL_NON_REF_SPLICE | AC090403.1^ENSG00000264151.6 | chr18:27392780:- | UTRN^ENSG00000152818.18 | chr6:144473744:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1336:33303:15615 | . | NO_LDAS | 0.0524 | GT | 1.5058 | AG | 1.6402 | ["INTERCHROMOSOMAL[chr18--chr6]"] |
| AC020922.2--EPS15L1 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | AC020922.2^ENSG00000268729.1 | chr19:55312075:- | EPS15L1^ENSG00000127527.14 | chr19:16471991:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1325:23434:2079 | . | NO_LDAS | 0.1048 | GT | 1.1033 | AG | 1.1033 | ["INTRACHROMOSOMAL[chr19:38.84Mb]"] |
| AC011294.1--FBXL12 | 1 | 0 | 1.00 | 0.00 | ONLY_REF_SPLICE | AC011294.1^ENSG00000233539.5 | chr7:46677795:- | FBXL12^ENSG00000127452.9 | chr19:9811717:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:4:2331:3346:15152 | . | NO_LDAS | 0.1048 | GT | 1.9899 | AG | 1.9656 | ["INTERCHROMOSOMAL[chr7--chr19]"] |
| AC007431.1--DYNLT1 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | AC007431.1^ENSG00000263499.1 | chr17:57601277:- | DYNLT1^ENSG00000146425.11 | chr6:158642576:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:4:2210:30868:9295 | . | NO_LDAS | 0.1048 | AT | 1.8295 | AC | 1.6402 | ["INTERCHROMOSOMAL[chr17--chr6]"] |
| AC006013.1--CNOT6 | 1 | 0 | 0.25 | 0.00 | ONLY_REF_SPLICE | AC006013.1^ENSG00000236531.2 | chr7:68091325:+ | CNOT6^ENSG00000113300.13 | chr5:180549931:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1126:47501:5176 | . | NO_LDAS | 0.0262 | GT | 1.9329 | AG | 1.6402 | ["INTERCHROMOSOMAL[chr7--chr5]"] |
| AC004009.3--EGR1 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | AC004009.3^ENSG00000279655.1 | chr7:27380706:+ | EGR1^ENSG00000120738.8 | chr5:138465928:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:2:1157:29396:17535 | . | NO_LDAS | 0.1048 | GT | 1.8295 | AG | 1.5301 | ["INTERCHROMOSOMAL[chr7--chr5]"] |
| ABLIM3--PTPRB | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | ABLIM3^ENSG00000173210.20 | chr5:149251419:+ | PTPRB^ENSG00000127329.16 | chr12:70558894:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:2:2173:29849:8651 | . | NO_LDAS | 0.1048 | GT | 1.8295 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr5--chr12]"] |
| ABI3BP--CIZ1 | 1 | 0 | 1.00 | 0.00 | ONLY_REF_SPLICE | ABI3BP^ENSG00000154175.18 | chr3:100850660:- | CIZ1^ENSG00000148337.21 | chr9:128185776:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:1338:22131:4727 | . | NO_LDAS | 0.1048 | GT | 1.8256 | AG | 1.9656 | ["INTERCHROMOSOMAL[chr3--chr9]"] |
| ABI2--TFE3 | 1 | 0 | 1.00 | 0.00 | INCL_NON_REF_SPLICE | ABI2^ENSG00000138443.17 | chr2:203441058:+ | TFE3^ENSG00000068323.17 | chrX:49030447:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:1:2292:46102:17717 | . | NO_LDAS | 0.1048 | GT | 0.9056 | AG | 1.5329 | ["INTERCHROMOSOMAL[chr2--chrX]"] |
210 rows