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Demultiplex_Stats_aggregate.csv
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s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0008_exp0011/B23LG7FLT4/nfcore_rnafusion__3e501777--20260519-101300/bclconvert/reports/Demultiplex_Stats_aggregate.csv
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dev_rna_exp0008_exp0011-3e501777
Published
May 28, 2026 10:58 AM

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SampleID Lanes Index # Reads # Perfect Index Reads # One Mismatch Index Reads # Two Mismatch Index Reads % Reads % Perfect Index Reads % One Mismatch Index Reads % Two Mismatch Index Reads
22Rv1_FFPE_RNA_0001_B23LG7FLT4_1 1,2,3,4 ATACACACCT-AGTGTGATAG 17701448 17051882 649566 0 0.0005 0.9633 0.0367 0.0
22Rv1_FFPE_RNA_0001_B23LG7FLT4_2 1,2,3,4 AACGCTCTGA-GAGTAACGTG 15751549 15193639 557910 0 0.0005 0.9646 0.0354 0.0
22Rv1_FFPE_RNA_0001_B23LG7FLT4_3 1,2,3,4 CAACCATGAT-ATAAGGTGAC 17658335 17068618 589717 0 0.0005 0.9666 0.0334 0.0
786-O_FFPE_RNA_0001_B23LG7FLT4_1 1,2,3,4 CAACTACCGC-ATGCTGCAGG 467394846 452593192 14801654 0 0.0143 0.9683 0.0317 0.0
786-O_FFPE_RNA_0001_B23LG7FLT4_2 1,2,3,4 CTCTCTCTAG-ACTTGATTGG 517372845 498701213 18671632 0 0.0158 0.9639 0.0361 0.0
786-O_FFPE_RNA_0001_B23LG7FLT4_3 1,2,3,4 CCACTCAACG-CCTGTCTAGA 485199530 468667120 16532410 0 0.0148 0.9659 0.0341 0.0
A549_FFPE_01_RNA_0001_B23LG7FLT4_1 1,2,3,4 ACTCGTCCAG-TGGTCCTCGT 3995385 3860896 134489 0 0.0001 0.9663 0.0337 0.0
A549_FFPE_01_RNA_0001_B23LG7FLT4_2 1,2,3,4 AAGGCTCCAT-TGAAGATGGA 2980467 2886752 93715 0 0.0001 0.9686 0.0314 0.0
A549_FFPE_01_RNA_0001_B23LG7FLT4_3 1,2,3,4 AGCCACTCGT-CCAAGAGGAT 4618078 4359172 258906 0 0.0001 0.9439 0.0561 0.0
A673_FFPE_RNA_0001_B23LG7FLT4_1 1,2,3,4 GATCCACTTA-GTGTTCTGTT 473453433 457280238 16173195 0 0.0145 0.9658 0.0342 0.0
A673_FFPE_RNA_0001_B23LG7FLT4_2 1,2,3,4 CAGACTGCAG-ACCGGCCTTA 404128147 371593876 32534271 0 0.0123 0.9195 0.0805 0.0
A673_FFPE_RNA_0001_B23LG7FLT4_3 1,2,3,4 ATCGAGAGAC-TGGAAGCAGA 312903780 302266413 10637367 0 0.0096 0.966 0.034 0.0
BT-20_FFPE_RNA_0001_B23LG7FLT4_1 1,2,3,4 CCGAAGGTTC-TCTATCTGAC 89349155 86647604 2701551 0 0.0027 0.9698 0.0302 0.0
BT-20_FFPE_RNA_0001_B23LG7FLT4_2 1,2,3,4 TATACGATGC-CTCCTAATCT 89745342 86547749 3197593 0 0.0027 0.9644 0.0356 0.0
BT-20_FFPE_RNA_0001_B23LG7FLT4_3 1,2,3,4 TCTACAGCTA-AATGGAAGAC 84139808 81103709 3036099 0 0.0026 0.9639 0.0361 0.0
BreastNB_FFPE_L01_RNA_01_B23LG7FLT4_1 5,6,7,8 ACTGGCAAGA-TGTTGTCCAT 52978814 52144974 833840 0 0.0016 0.9843 0.0157 0.0
BreastNB_FFPE_L02_RNA_01_B23LG7FLT4_1 5,6,7,8 ACAAGAACCT-CGATACTGAA 56438162 55228871 1209291 0 0.0017 0.9786 0.0214 0.0
BreastNB_FFPE_L03_RNA_01_B23LG7FLT4_1 5,6,7,8 AGAGTATGTG-AGATGGCTTC 81365957 79877017 1488940 0 0.0025 0.9817 0.0183 0.0
BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1 1,2,3,4 CTGAACGTAT-GCCAATACAT 15162667 14667615 495052 0 0.0005 0.9674 0.0326 0.0
BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2 5,6,7,8 ACCTTCGGAC-GACCGTAGAT 16590658 16282224 308434 0 0.0005 0.9814 0.0186 0.0
BreastNP_FFPE_L03_RNA_01_B23LG7FLT4_1 5,6,7,8 TTCTACCGGC-TACTCGTAAG 42015743 41334905 680838 0 0.0013 0.9838 0.0162 0.0
BreastNP_FFPE_L04_RNA_01_B23LG7FLT4_1 5,6,7,8 TAAGCCACGC-TTACGAACGA 38527645 37940999 586646 0 0.0012 0.9848 0.0152 0.0
ColoN_FFPE_L01_RNA_01_B23LG7FLT4_1 1,2,3,4 TCCGAGATGC-TGTCACCTTA 18721246 17698477 1022769 0 0.0006 0.9454 0.0546 0.0
ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2 5,6,7,8 ACTTAGATCG-CGGAATTCTT 273291249 262391012 10900237 0 0.0083 0.9601 0.0399 0.0
ColoN_FFPE_L02_RNA_01_B23LG7FLT4_1 5,6,7,8 CACGAGAAGT-GTCTGCGTAG 40107246 38956587 1150659 0 0.0012 0.9713 0.0287 0.0
ColoN_FFPE_L03_RNA_01_B23LG7FLT4_1 5,6,7,8 AATCGAACTC-ACGAACCTTA 19058536 18641455 417081 0 0.0006 0.9781 0.0219 0.0
ColoN_FFPE_L06_RNA_01_B23LG7FLT4_1 1,2,3,4 GTTAGTGCCT-CTGCATAGCA 15151093 14641751 509342 0 0.0005 0.9664 0.0336 0.0
ColoN_FFPE_L06_RNA_01_B23LG7FLT4_2 5,6,7,8 GATCAACAAG-AAGCACTGTC 132597913 129920483 2677430 0 0.004 0.9798 0.0202 0.0
ColoN_FFPE_L07_RNA_01_B23LG7FLT4_1 5,6,7,8 GACAATTAGC-CCGGTCATGA 46778364 45840512 937852 0 0.0014 0.98 0.02 0.0
ColoN_FFPE_L08_RNA_01_B23LG7FLT4_1 5,6,7,8 AGGCTGGAGA-CAACTGTCAT 116429517 114305182 2124335 0 0.0036 0.9818 0.0182 0.0
EndoN_FFPE_L01_RNA_01_B23LG7FLT4_1 5,6,7,8 AACCGGCCTT-TGTTCAGATC 641320430 629048005 12272425 0 0.0196 0.9809 0.0191 0.0
EndoN_FFPE_L02_RNA_01_B23LG7FLT4_1 1,2,3,4 CGCAATAAGA-CCTACAGCGT 17448653 16765666 682987 0 0.0005 0.9609 0.0391 0.0
EndoN_FFPE_L02_RNA_01_B23LG7FLT4_2 5,6,7,8 CGTCTAGTAA-TTAATCCAGC 88800769 87430729 1370040 0 0.0027 0.9846 0.0154 0.0
EndoN_FFPE_L03_RNA_01_B23LG7FLT4_1 5,6,7,8 TGACAAGAGG-AATCTGTTGG 113065956 111097847 1968109 0 0.0035 0.9826 0.0174 0.0
EndoN_FFPE_L04_RNA_01_B23LG7FLT4_1 5,6,7,8 CATTATCGCT-CGAGTTGCTT 514417418 505702289 8715129 0 0.0157 0.9831 0.0169 0.0
EndoN_FFPE_L05_RNA_01_B23LG7FLT4_1 5,6,7,8 CATTGAGCTA-ACTTCACATC 31291361 30668082 623279 0 0.001 0.9801 0.0199 0.0
EndoN_FFPE_L06_RNA_01_B23LG7FLT4_1 5,6,7,8 CTTCGGAATC-CGTCGGTAAG 219847588 214384270 5463318 0 0.0067 0.9751 0.0249 0.0
EndoN_FFPE_L08_RNA_01_B23LG7FLT4_1 5,6,7,8 TGTTCGCTCT-ACTTGCGTGT 41878760 41029882 848878 0 0.0013 0.9797 0.0203 0.0
EndoN_FFPE_L09_RNA_01_B23LG7FLT4_1 5,6,7,8 AACCACACTA-CCTCTGCTGA 696681967 683509916 13172051 0 0.0213 0.9811 0.0189 0.0
FFPE_HD789_01_RNA_0002_B23LG7FLT4_1 1,2,3,4 TCGGTCTGTT-TGGTTGGTAC 381010539 369495478 11515061 0 0.0116 0.9698 0.0302 0.0
FFPE_HD789_01_RNA_0004_B23LG7FLT4_1 5,6,7,8 CCTCTGTCAT-CGTATCGATT 2419440325 2386032637 33407688 0 0.0739 0.9862 0.0138 0.0
FFPE_V4_0001_RNA_0001_B23LG7FLT4_1 1,2,3,4 GCATTCCTTC-GAGCCTGCTT 279995908 205129497 74866411 0 0.0086 0.7326 0.2674 0.0
FFPE_V4_0001_RNA_0001_B23LG7FLT4_2 5,6,7,8 GCAGATGTAA-TACACGCCTC 1932935325 1893472791 39462534 0 0.059 0.9796 0.0204 0.0
HeadNeckN_FFPE_L01_RNA_01_B23LG7FLT4_1 5,6,7,8 TCACACGGAT-CTTCTGATCG 133377356 131507464 1869892 0 0.0041 0.986 0.014 0.0
HeadNeckN_FFPE_L02_RNA_01_B23LG7FLT4_1 5,6,7,8 AGGATACGGT-AACCACGTCA 107190221 105247384 1942837 0 0.0033 0.9819 0.0181 0.0
HeadNeckN_FFPE_L03_RNA_01_B23LG7FLT4_1 5,6,7,8 TCGACGTTGG-GATAAGTGTG 73822217 70604870 3217347 0 0.0023 0.9564 0.0436 0.0
HeadNeckN_FFPE_L04_RNA_01_B23LG7FLT4_1 5,6,7,8 ACGGCCTACA-TCTCACTCTA 58610291 57627770 982521 0 0.0018 0.9832 0.0168 0.0
HeadNeckN_FFPE_L05_RNA_01_B23LG7FLT4_1 5,6,7,8 GCTACAGGTC-TTATGCAGGA 23355997 22841567 514430 0 0.0007 0.978 0.022 0.0
HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1 5,6,7,8 GCCAAGTAAC-TGCGTGATGA 73271128 71242219 2028909 0 0.0022 0.9723 0.0277 0.0
HeadNeckN_FFPE_L08_RNA_01_B23LG7FLT4_1 5,6,7,8 AAGAGTACGA-GCAAGGACGT 561886802 551593531 10293271 0 0.0172 0.9817 0.0183 0.0
HeadNeckN_FFPE_L09_RNA_01_B23LG7FLT4_1 5,6,7,8 CACGTAAGAG-TCAATCCGCG 148249073 137646342 10602731 0 0.0045 0.9285 0.0715 0.0
Hs746T_FFPE_RNA_0001_23LG7FLT4_1 1,2,3,4 CTTGTTACTG-AATTCGGTGG 614254436 595558302 18696134 0 0.0188 0.9696 0.0304 0.0
Hs746T_FFPE_RNA_0001_B23LG7FLT4_1 1,2,3,4 AGCCTCTGCT-TTCGCCTTAG 551496763 525434074 26062689 0 0.0168 0.9527 0.0473 0.0
Hs746T_FFPE_RNA_0001_B23LG7FLT4_2 1,2,3,4 GATTGGCGAT-CTGTCTCATT 481509500 463863926 17645574 0 0.0147 0.9634 0.0366 0.0
KG1_FFPE_01_RNA_0003_B23LG7FLT4_1 1,2,3,4 CGCACATTAC-TGGAACGTAG 387668627 375529415 12139212 0 0.0118 0.9687 0.0313 0.0
KG1_FFPE_01_RNA_0003_B23LG7FLT4_2 1,2,3,4 AATCGTGCGG-GTTCAGTAGA 445976109 431980274 13995835 0 0.0136 0.9686 0.0314 0.0
KG1_FFPE_01_RNA_0003_B23LG7FLT4_3 1,2,3,4 CTAGACGAGC-GAGGATGGAT 512218603 495143600 17075003 0 0.0156 0.9667 0.0333 0.0
LungN_FFPE_L01_RNA_01_B23LG7FLT4_1 5,6,7,8 CAACCATACA-ACCGGTTATA 831238019 809513695 21724324 0 0.0254 0.9739 0.0261 0.0
LungN_FFPE_L02_RNA_01_B23LG7FLT4_1 5,6,7,8 GTAGGCCGTT-GCCACTGTCT 182032840 178222864 3809976 0 0.0056 0.9791 0.0209 0.0
LungN_FFPE_L03_RNA_01_B23LG7FLT4_1 5,6,7,8 CGGATTGATC-AGTCACAACA 621340947 608796294 12544653 0 0.019 0.9798 0.0202 0.0
MCF7_FFPE_RNA_0001_B23LG7FLT4_1 1,2,3,4 ATCTAACCTG-CCTGTGGTTC 441120918 426053512 15067406 0 0.0135 0.9658 0.0342 0.0
MCF7_FFPE_RNA_0001_B23LG7FLT4_2 1,2,3,4 TACCGGAGCA-CTTAGCAGGC 387567195 375056807 12510388 0 0.0118 0.9677 0.0323 0.0
MCF7_FFPE_RNA_0001_B23LG7FLT4_3 1,2,3,4 GTAATACTCG-CTCACGAATC 446470668 417352862 29117806 0 0.0136 0.9348 0.0652 0.0
NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_1 1,2,3,4 GCGACAATAT-ATTCGTACGG 615805720 595455519 20350201 0 0.0188 0.967 0.033 0.0
NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_2 1,2,3,4 AGCACCAGTC-CTCGTGTAGC 499848672 482437209 17411463 0 0.0153 0.9652 0.0348 0.0
NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_3 1,2,3,4 GATTCTTAGC-TGCTAGCGGT 466440831 452282985 14157846 0 0.0142 0.9696 0.0304 0.0
NTC_0001_0001_B23LG7FLT4_1 1,2,3,4 CGTCGCCTAT-TATCTTCTCG 874575 830528 44047 0 0.0 0.9496 0.0504 0.0
NTC_0001_0001_B23LG7FLT4_2 5,6,7,8 CTCATCATCT-TAAGCCTCTA 1173175 1142568 30607 0 0.0 0.9739 0.0261 0.0
OvarianND_FFPE_L01_RNA_01_B23LG7FLT4_1 5,6,7,8 TTGTGAAGGC-TCGTCAGTAC 958448138 941809924 16638214 0 0.0293 0.9826 0.0174 0.0
OvarianND_FFPE_L02_RNA_01_B23LG7FLT4_1 5,6,7,8 GTCGACTCCT-TGCCGTTAGC 825367536 801676344 23691192 0 0.0252 0.9713 0.0287 0.0
OvarianND_FFPE_L03_RNA_01_B23LG7FLT4_1 5,6,7,8 CTGAGCTTGT-CTTCTTGCGT 991538490 977747476 13791014 0 0.0303 0.9861 0.0139 0.0
OvarianNP_FFPE_L01_RNA_01_B23LG7FLT4_1 5,6,7,8 GTACAGCGGA-CAATCTGTGT 16695125 16436644 258481 0 0.0005 0.9845 0.0155 0.0
OvarianNP_FFPE_L02_RNA_01_B23LG7FLT4_1 5,6,7,8 ACTTCAACAG-GCGTGAGCAT 17839955 17482214 357741 0 0.0005 0.9799 0.0201 0.0
OvarianNP_FFPE_L05_RNA_01_B23LG7FLT4_1 5,6,7,8 TGGACAATAG-GAGTCCTGTG 48475141 47435920 1039221 0 0.0015 0.9786 0.0214 0.0
OvarianN_FFPE_L03_RNA_01_B23LG7FLT4_1 1,2,3,4 CACTAGACTT-TGTGGATTAG 6491904 6278238 213666 0 0.0002 0.9671 0.0329 0.0
OvarianN_FFPE_L03_RNA_01_B23LG7FLT4_2 5,6,7,8 TCTTAGGTGG-GATCACTGGT 195770788 192695237 3075551 0 0.006 0.9843 0.0157 0.0
OvarianN_FFPE_L04_RNA_01_B23LG7FLT4_1 5,6,7,8 AGGTATTCGG-AGATGTGCGC 503106710 484903659 18203051 0 0.0154 0.9638 0.0362 0.0
RT4_FFPE_RNA_0001_B23LG7FLT4_1 1,2,3,4 TCACCGTGGT-TCGCTCTGCT 386433180 374022634 12410546 0 0.0118 0.9679 0.0321 0.0
RT4_FFPE_RNA_0001_B23LG7FLT4_2 1,2,3,4 CGGATCATTA-CCGTAACCTT 374402249 359856881 14545368 0 0.0114 0.9612 0.0388 0.0
RT4_FFPE_RNA_0001_B23LG7FLT4_3 1,2,3,4 CAAGACGGAC-GTACTCCGTC 315072446 304780301 10292145 0 0.0096 0.9673 0.0327 0.0
SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_1 1,2,3,4 TTGTGAGAAG-TTCACTGGCT 654884306 634776365 20107941 0 0.02 0.9693 0.0307 0.0
SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_2 1,2,3,4 GCAGAAGTCT-CTGCGTCGAA 591065579 571395124 19670455 0 0.018 0.9667 0.0333 0.0
SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_3 1,2,3,4 TGTCGGTGCT-AGTTCTTCCG 562734423 545007840 17726583 0 0.0172 0.9685 0.0315 0.0
SW780_FFPE_RNA_0001_B23LG7FLT4_1 1,2,3,4 TTGCCGTATC-ACATTAGCGG 366947484 354658049 12289435 0 0.0112 0.9665 0.0335 0.0
SW780_FFPE_RNA_0001_B23LG7FLT4_2 1,2,3,4 TACCTAGACT-GCATTCGAAT 380476223 363264623 17211600 0 0.0116 0.9548 0.0452 0.0
SW780_FFPE_RNA_0001_B23LG7FLT4_3 1,2,3,4 TGTGATCGCG-AGACGAGTCT 363036674 348410911 14625763 0 0.0111 0.9597 0.0403 0.0
SkinN_FFPE_L01_RNA_01_B23LG7FLT4_1 1,2,3,4 ATAGAGTTCG-GCATAACGGC 10108986 9720075 388911 0 0.0003 0.9615 0.0385 0.0
SkinN_FFPE_L01_RNA_01_B23LG7FLT4_2 5,6,7,8 TATCATGTCG-TAATCTGCAC 115367823 113465293 1902530 0 0.0035 0.9835 0.0165 0.0
SkinN_FFPE_L02_RNA_01_B23LG7FLT4_1 5,6,7,8 GTGAGAGTAT-ATCTGTGAGG 83106995 81560363 1546632 0 0.0025 0.9814 0.0186 0.0
SkinN_FFPE_L04_RNA_01_B23LG7FLT4_1 5,6,7,8 AACATAAGGC-GTTAGCTTAG 371430344 364304779 7125565 0 0.0113 0.9808 0.0192 0.0
SkinN_FFPE_L07_RNA_01_B23LG7FLT4_1 5,6,7,8 CTGGAGAATA-TCCATACAAC 221740431 216767114 4973317 0 0.0068 0.9776 0.0224 0.0
SkinN_FFPE_L08_RNA_01_B23LG7FLT4_1 5,6,7,8 TCAATCAGAG-GACTCTGGTT 74464669 72424303 2040366 0 0.0023 0.9726 0.0274 0.0
SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1 5,6,7,8 TTGCAATGCG-CGAGACTTCA 487642108 476586205 11055903 0 0.0149 0.9773 0.0227 0.0
U118MG_FFPE_RNA_0001_B23LG7FLT4_1 1,2,3,4 TCCGGAGAAC-ATTCCTCTGG 547849826 530013015 17836811 0 0.0167 0.9674 0.0326 0.0
U118MG_FFPE_RNA_0001_B23LG7FLT4_2 1,2,3,4 GATAGATCAG-CGTACGCCAT 576428001 556443428 19984573 0 0.0176 0.9653 0.0347 0.0
U118MG_FFPE_RNA_0001_B23LG7FLT4_3 1,2,3,4 GCGAAGAATT-TCACGGATGA 574008244 553498866 20509378 0 0.0175 0.9643 0.0357 0.0
Undetermined 1,2,3,4,5,6,7,8 2128960884 2128960884 0 0 0.065 1.0 0.0 0.0
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