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Quality_Metrics.csv
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s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0008_exp0011/B23LG7FLT4/nfcore_rnafusion__e7be3c7a--20260528-101300/bclconvert/L002/Reports/Quality_Metrics.csv
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Workflow Run
dev_rna_exp0008_exp0011-e7be3c7a
Published
May 28, 2026 11:05 AM

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Lane SampleID index index2 ReadNumber Yield YieldQ30 QualityScoreSum Mean Quality Score (PF) % Q30
2 RT4_FFPE_RNA_0001_B23LG7FLT4_1 TCACCGTGGT TCGCTCTGCT 1 14492275585 13761465108 564174993882 38.93 0.95
2 RT4_FFPE_RNA_0001_B23LG7FLT4_1 TCACCGTGGT TCGCTCTGCT 2 14492275585 13530893494 558965285635 38.57 0.93
2 786-O_FFPE_RNA_0001_B23LG7FLT4_1 CAACTACCGC ATGCTGCAGG 1 17578069909 16640215333 682729591375 38.84 0.95
2 786-O_FFPE_RNA_0001_B23LG7FLT4_1 CAACTACCGC ATGCTGCAGG 2 17578069909 16335998421 676477143345 38.48 0.93
2 A549_FFPE_01_RNA_0001_B23LG7FLT4_1 ACTCGTCCAG TGGTCCTCGT 1 147535909 95470108 4749397867 32.19 0.65
2 A549_FFPE_01_RNA_0001_B23LG7FLT4_1 ACTCGTCCAG TGGTCCTCGT 2 147535909 108353298 5122210761 34.72 0.73
2 U118MG_FFPE_RNA_0001_B23LG7FLT4_1 TCCGGAGAAC ATTCCTCTGG 1 20636577476 19707915550 806114156281 39.06 0.95
2 U118MG_FFPE_RNA_0001_B23LG7FLT4_1 TCCGGAGAAC ATTCCTCTGG 2 20636577476 19325269277 797286476651 38.63 0.94
2 SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_1 TTGTGAGAAG TTCACTGGCT 1 24438988657 23238387539 952183740392 38.96 0.95
2 SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_1 TTGTGAGAAG TTCACTGGCT 2 24438988657 22893367890 944542606614 38.65 0.94
2 BT-20_FFPE_RNA_0001_B23LG7FLT4_1 CCGAAGGTTC TCTATCTGAC 1 3348751311 2917325888 124247914457 37.10 0.87
2 BT-20_FFPE_RNA_0001_B23LG7FLT4_1 CCGAAGGTTC TCTATCTGAC 2 3348751311 2985632764 126157934956 37.67 0.89
2 22Rv1_FFPE_RNA_0001_B23LG7FLT4_1 ATACACACCT AGTGTGATAG 1 660595857 557038279 24107475055 36.49 0.84
2 22Rv1_FFPE_RNA_0001_B23LG7FLT4_1 ATACACACCT AGTGTGATAG 2 660595857 558360383 24232651166 36.68 0.85
2 Hs746T_FFPE_RNA_0001_B23LG7FLT4_1 AGCCTCTGCT TTCGCCTTAG 1 20429134431 19293996343 792387820150 38.79 0.94
2 Hs746T_FFPE_RNA_0001_B23LG7FLT4_1 AGCCTCTGCT TTCGCCTTAG 2 20429134431 19072752266 787859565149 38.57 0.93
2 RT4_FFPE_RNA_0001_B23LG7FLT4_2 CGGATCATTA CCGTAACCTT 1 14005935389 13249537327 543687088828 38.82 0.95
2 RT4_FFPE_RNA_0001_B23LG7FLT4_2 CGGATCATTA CCGTAACCTT 2 14005935389 13097566717 540659556343 38.60 0.94
2 786-O_FFPE_RNA_0001_B23LG7FLT4_2 CTCTCTCTAG ACTTGATTGG 1 19287496364 18201131516 747853843757 38.77 0.94
2 786-O_FFPE_RNA_0001_B23LG7FLT4_2 CTCTCTCTAG ACTTGATTGG 2 19287496364 18015029688 744262713858 38.59 0.93
2 A549_FFPE_01_RNA_0001_B23LG7FLT4_2 AAGGCTCCAT TGAAGATGGA 1 111197608 81983789 3816284297 34.32 0.74
2 A549_FFPE_01_RNA_0001_B23LG7FLT4_2 AAGGCTCCAT TGAAGATGGA 2 111197608 88542724 4017983929 36.13 0.80
2 Hs746T_FFPE_RNA_0001_23LG7FLT4_1 CTTGTTACTG AATTCGGTGG 1 22837100627 21593197130 886215123212 38.81 0.95
2 Hs746T_FFPE_RNA_0001_23LG7FLT4_1 CTTGTTACTG AATTCGGTGG 2 22837100627 21332347784 881265082772 38.59 0.93
2 U118MG_FFPE_RNA_0001_B23LG7FLT4_2 GATAGATCAG CGTACGCCAT 1 21606167502 20440999318 838831838899 38.82 0.95
2 U118MG_FFPE_RNA_0001_B23LG7FLT4_2 GATAGATCAG CGTACGCCAT 2 21606167502 20151285143 833033129177 38.56 0.93
2 SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_2 GCAGAAGTCT CTGCGTCGAA 1 22040695521 20956099142 858599045963 38.96 0.95
2 SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_2 GCAGAAGTCT CTGCGTCGAA 2 22040695521 20579823968 850349451779 38.58 0.93
2 BT-20_FFPE_RNA_0001_B23LG7FLT4_2 TATACGATGC CTCCTAATCT 1 3357836377 3002456743 126601900408 37.70 0.89
2 BT-20_FFPE_RNA_0001_B23LG7FLT4_2 TATACGATGC CTCCTAATCT 2 3357836377 2994903136 126543636013 37.69 0.89
2 22Rv1_FFPE_RNA_0001_B23LG7FLT4_2 AACGCTCTGA GAGTAACGTG 1 586373468 499025245 21490844884 36.65 0.85
2 22Rv1_FFPE_RNA_0001_B23LG7FLT4_2 AACGCTCTGA GAGTAACGTG 2 586373468 506492977 21752796862 37.10 0.86
2 Hs746T_FFPE_RNA_0001_B23LG7FLT4_2 GATTGGCGAT CTGTCTCATT 1 18057478903 17115651434 702254944031 38.89 0.95
2 Hs746T_FFPE_RNA_0001_B23LG7FLT4_2 GATTGGCGAT CTGTCTCATT 2 18057478903 16854947341 696516469204 38.57 0.93
2 RT4_FFPE_RNA_0001_B23LG7FLT4_3 CAAGACGGAC GTACTCCGTC 1 11883112610 11310811431 463264425096 38.99 0.95
2 RT4_FFPE_RNA_0001_B23LG7FLT4_3 CAAGACGGAC GTACTCCGTC 2 11883112610 11055604560 457567111755 38.51 0.93
2 786-O_FFPE_RNA_0001_B23LG7FLT4_3 CCACTCAACG CCTGTCTAGA 1 18151552507 17083829301 702655820979 38.71 0.94
2 786-O_FFPE_RNA_0001_B23LG7FLT4_3 CCACTCAACG CCTGTCTAGA 2 18151552507 16903583896 699162543220 38.52 0.93
2 A549_FFPE_01_RNA_0001_B23LG7FLT4_3 AGCCACTCGT CCAAGAGGAT 1 171410217 118304607 5702595906 33.27 0.69
2 A549_FFPE_01_RNA_0001_B23LG7FLT4_3 AGCCACTCGT CCAAGAGGAT 2 171410217 125954076 5963617971 34.79 0.73
2 U118MG_FFPE_RNA_0001_B23LG7FLT4_3 GCGAAGAATT TCACGGATGA 1 21576224504 20450851148 838646512475 38.87 0.95
2 U118MG_FFPE_RNA_0001_B23LG7FLT4_3 GCGAAGAATT TCACGGATGA 2 21576224504 20192809103 833393504378 38.63 0.94
2 SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_3 TGTCGGTGCT AGTTCTTCCG 1 21045776906 19950849365 817971840743 38.87 0.95
2 SK-BR-3_FFPE_01_RNA_0001_B23LG7FLT4_3 TGTCGGTGCT AGTTCTTCCG 2 21045776906 19752505769 814117713665 38.68 0.94
2 BT-20_FFPE_RNA_0001_B23LG7FLT4_3 TCTACAGCTA AATGGAAGAC 1 3135226590 2751709263 116619044964 37.20 0.88
2 BT-20_FFPE_RNA_0001_B23LG7FLT4_3 TCTACAGCTA AATGGAAGAC 2 3135226590 2824792091 118758903173 37.88 0.90
2 22Rv1_FFPE_RNA_0001_B23LG7FLT4_3 CAACCATGAT ATAAGGTGAC 1 660234061 567031815 24356142123 36.89 0.86
2 22Rv1_FFPE_RNA_0001_B23LG7FLT4_3 CAACCATGAT ATAAGGTGAC 2 660234061 571907740 24573982183 37.22 0.87
2 KG1_FFPE_01_RNA_0003_B23LG7FLT4_1 CGCACATTAC TGGAACGTAG 1 14600295549 13880175022 568742292775 38.95 0.95
2 KG1_FFPE_01_RNA_0003_B23LG7FLT4_1 CGCACATTAC TGGAACGTAG 2 14600295549 13684958152 564371187883 38.65 0.94
2 MCF7_FFPE_RNA_0001_B23LG7FLT4_1 ATCTAACCTG CCTGTGGTTC 1 16524693758 15610160633 640962643145 38.79 0.94
2 MCF7_FFPE_RNA_0001_B23LG7FLT4_1 ATCTAACCTG CCTGTGGTTC 2 16524693758 15436567483 637647935704 38.59 0.93
2 NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_1 GCGACAATAT ATTCGTACGG 1 23036564832 22040897495 900712939529 39.10 0.96
2 NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_1 GCGACAATAT ATTCGTACGG 2 23036564832 21574157730 890092499745 38.64 0.94
2 SW780_FFPE_RNA_0001_B23LG7FLT4_1 TTGCCGTATC ACATTAGCGG 1 13745766315 12962457045 532523366142 38.74 0.94
2 SW780_FFPE_RNA_0001_B23LG7FLT4_1 TTGCCGTATC ACATTAGCGG 2 13745766315 12809453181 529661637333 38.53 0.93
2 A673_FFPE_RNA_0001_B23LG7FLT4_1 GATCCACTTA GTGTTCTGTT 1 17786022126 16795656140 689638243214 38.77 0.94
2 A673_FFPE_RNA_0001_B23LG7FLT4_1 GATCCACTTA GTGTTCTGTT 2 17786022126 16629590120 686695144475 38.61 0.93
2 ColoN_FFPE_L01_RNA_01_B23LG7FLT4_1 TCCGAGATGC TGTCACCTTA 1 701260610 590969244 25628084997 36.55 0.84
2 ColoN_FFPE_L01_RNA_01_B23LG7FLT4_1 TCCGAGATGC TGTCACCTTA 2 701260610 596531627 25892268968 36.92 0.85
2 SkinN_FFPE_L01_RNA_01_B23LG7FLT4_1 ATAGAGTTCG GCATAACGGC 1 378441183 301447117 13411712188 35.44 0.80
2 SkinN_FFPE_L01_RNA_01_B23LG7FLT4_1 ATAGAGTTCG GCATAACGGC 2 378441183 314451185 13810146422 36.49 0.83
2 FFPE_V4_0001_RNA_0001_B23LG7FLT4_1 GCATTCCTTC GAGCCTGCTT 1 10509211326 9986406124 409095628486 38.93 0.95
2 FFPE_V4_0001_RNA_0001_B23LG7FLT4_1 GCATTCCTTC GAGCCTGCTT 2 10509211326 9848314155 406147909467 38.65 0.94
2 KG1_FFPE_01_RNA_0003_B23LG7FLT4_2 AATCGTGCGG GTTCAGTAGA 1 16703326758 15806352984 648490286571 38.82 0.95
2 KG1_FFPE_01_RNA_0003_B23LG7FLT4_2 AATCGTGCGG GTTCAGTAGA 2 16703326758 15632617095 645174957393 38.63 0.94
2 MCF7_FFPE_RNA_0001_B23LG7FLT4_2 TACCGGAGCA CTTAGCAGGC 1 14650268999 13819879810 567777339256 38.76 0.94
2 MCF7_FFPE_RNA_0001_B23LG7FLT4_2 TACCGGAGCA CTTAGCAGGC 2 14650268999 13671754927 564985444252 38.56 0.93
2 NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_2 AGCACCAGTC CTCGTGTAGC 1 18795509976 17742704739 728676355536 38.77 0.94
2 NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_2 AGCACCAGTC CTCGTGTAGC 2 18795509976 17566831664 725389457117 38.59 0.93
2 SW780_FFPE_RNA_0001_B23LG7FLT4_2 TACCTAGACT GCATTCGAAT 1 14342524506 13594972326 557583752592 38.88 0.95
2 SW780_FFPE_RNA_0001_B23LG7FLT4_2 TACCTAGACT GCATTCGAAT 2 14342524506 13375387620 552947769465 38.55 0.93
2 A673_FFPE_RNA_0001_B23LG7FLT4_2 CAGACTGCAG ACCGGCCTTA 1 15184755394 14262241915 587053112608 38.66 0.94
2 A673_FFPE_RNA_0001_B23LG7FLT4_2 CAGACTGCAG ACCGGCCTTA 2 15184755394 14094466682 584012058941 38.46 0.93
2 ColoN_FFPE_L06_RNA_01_B23LG7FLT4_1 GTTAGTGCCT CTGCATAGCA 1 565345661 452658680 20110279976 35.57 0.80
2 ColoN_FFPE_L06_RNA_01_B23LG7FLT4_1 GTTAGTGCCT CTGCATAGCA 2 565345661 467597187 20613206637 36.46 0.83
2 EndoN_FFPE_L02_RNA_01_B23LG7FLT4_1 CGCAATAAGA CCTACAGCGT 1 652821471 531615221 23369142371 35.80 0.81
2 EndoN_FFPE_L02_RNA_01_B23LG7FLT4_1 CGCAATAAGA CCTACAGCGT 2 652821471 556243733 24127385588 36.96 0.85
2 FFPE_HD789_01_RNA_0002_B23LG7FLT4_1 TCGGTCTGTT TGGTTGGTAC 1 14318237364 13618037878 557491808923 38.94 0.95
2 FFPE_HD789_01_RNA_0002_B23LG7FLT4_1 TCGGTCTGTT TGGTTGGTAC 2 14318237364 13403125388 553109168495 38.63 0.94
2 KG1_FFPE_01_RNA_0003_B23LG7FLT4_3 CTAGACGAGC GAGGATGGAT 1 19270190405 18271721764 749546689183 38.90 0.95
2 KG1_FFPE_01_RNA_0003_B23LG7FLT4_3 CTAGACGAGC GAGGATGGAT 2 19270190405 17989390120 743364305263 38.58 0.93
2 MCF7_FFPE_RNA_0001_B23LG7FLT4_3 GTAATACTCG CTCACGAATC 1 16660354272 15695227677 645198676485 38.73 0.94
2 MCF7_FFPE_RNA_0001_B23LG7FLT4_3 GTAATACTCG CTCACGAATC 2 16660354272 15560608116 642862551282 38.59 0.93
2 NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_3 GATTCTTAGC TGCTAGCGGT 1 17461943963 16422370602 675670139346 38.69 0.94
2 NCI-H2228_FFPE_RNA_0001_B23LG7FLT4_3 GATTCTTAGC TGCTAGCGGT 2 17461943963 16031068631 667344488552 38.22 0.92
2 SW780_FFPE_RNA_0001_B23LG7FLT4_3 TGTGATCGCG AGACGAGTCT 1 13527445834 12651837502 521741374033 38.57 0.94
2 SW780_FFPE_RNA_0001_B23LG7FLT4_3 TGTGATCGCG AGACGAGTCT 2 13527445834 12561210993 520355192469 38.47 0.93
2 A673_FFPE_RNA_0001_B23LG7FLT4_3 ATCGAGAGAC TGGAAGCAGA 1 11750384365 11093848083 455843370711 38.79 0.94
2 A673_FFPE_RNA_0001_B23LG7FLT4_3 ATCGAGAGAC TGGAAGCAGA 2 11750384365 10955350493 452873075336 38.54 0.93
2 BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1 CTGAACGTAT GCCAATACAT 1 566493865 494488211 21133691471 37.31 0.87
2 BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_1 CTGAACGTAT GCCAATACAT 2 566493865 462729348 20548956705 36.27 0.82
2 OvarianN_FFPE_L03_RNA_01_B23LG7FLT4_1 CACTAGACTT TGTGGATTAG 1 241475425 167450812 8021074603 33.22 0.69
2 OvarianN_FFPE_L03_RNA_01_B23LG7FLT4_1 CACTAGACTT TGTGGATTAG 2 241475425 194020240 8735793304 36.18 0.80
2 NTC_0001_0001_B23LG7FLT4_1 CGTCGCCTAT TATCTTCTCG 1 32352505 25710314 1153162433 35.64 0.79
2 NTC_0001_0001_B23LG7FLT4_1 CGTCGCCTAT TATCTTCTCG 2 32352505 18557021 1001479550 30.96 0.57
2 Undetermined 1 43060055883 36525735056 1573191442940 36.53 0.85
2 Undetermined 2 43060055883 35163593139 1527776841519 35.48 0.82
99 rows