File Info
- Filename
- Adapter_Metrics.csv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0008_exp0011/B23LG7FLT4/nfcore_rnafusion__e7be3c7a--20260528-101300/bclconvert/L007/Reports/Adapter_Metrics.csv
- Size
- 7.8 KB
- Workflow Run
- dev_rna_exp0008_exp0011-e7be3c7a
- Published
- May 28, 2026 11:09 AM
Content
View in new tab| Lane | Sample_ID | index | index2 | ReadNumber | AdapterBases | SampleBases | % Adapter Bases |
| 7 | LungN_FFPE_L01_RNA_01_B23LG7FLT4_1 | CAACCATACA | ACCGGTTATA | 1 | 0 | 31267223153 | 0.000 |
| 7 | LungN_FFPE_L01_RNA_01_B23LG7FLT4_1 | CAACCATACA | ACCGGTTATA | 2 | 0 | 31267223153 | 0.000 |
| 7 | LungN_FFPE_L02_RNA_01_B23LG7FLT4_1 | GTAGGCCGTT | GCCACTGTCT | 1 | 0 | 6919987381 | 0.000 |
| 7 | LungN_FFPE_L02_RNA_01_B23LG7FLT4_1 | GTAGGCCGTT | GCCACTGTCT | 2 | 0 | 6919987381 | 0.000 |
| 7 | LungN_FFPE_L03_RNA_01_B23LG7FLT4_1 | CGGATTGATC | AGTCACAACA | 1 | 0 | 23373818500 | 0.000 |
| 7 | LungN_FFPE_L03_RNA_01_B23LG7FLT4_1 | CGGATTGATC | AGTCACAACA | 2 | 0 | 23373818500 | 0.000 |
| 7 | BreastNB_FFPE_L01_RNA_01_B23LG7FLT4_1 | ACTGGCAAGA | TGTTGTCCAT | 1 | 0 | 2002103564 | 0.000 |
| 7 | BreastNB_FFPE_L01_RNA_01_B23LG7FLT4_1 | ACTGGCAAGA | TGTTGTCCAT | 2 | 0 | 2002103564 | 0.000 |
| 7 | BreastNB_FFPE_L02_RNA_01_B23LG7FLT4_1 | ACAAGAACCT | CGATACTGAA | 1 | 0 | 2131488367 | 0.000 |
| 7 | BreastNB_FFPE_L02_RNA_01_B23LG7FLT4_1 | ACAAGAACCT | CGATACTGAA | 2 | 0 | 2131488367 | 0.000 |
| 7 | BreastNB_FFPE_L03_RNA_01_B23LG7FLT4_1 | AGAGTATGTG | AGATGGCTTC | 1 | 0 | 3087016065 | 0.000 |
| 7 | BreastNB_FFPE_L03_RNA_01_B23LG7FLT4_1 | AGAGTATGTG | AGATGGCTTC | 2 | 0 | 3087016065 | 0.000 |
| 7 | ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2 | ACTTAGATCG | CGGAATTCTT | 1 | 0 | 10305893450 | 0.000 |
| 7 | ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2 | ACTTAGATCG | CGGAATTCTT | 2 | 0 | 10305893450 | 0.000 |
| 7 | ColoN_FFPE_L06_RNA_01_B23LG7FLT4_2 | GATCAACAAG | AAGCACTGTC | 1 | 0 | 5011114690 | 0.000 |
| 7 | ColoN_FFPE_L06_RNA_01_B23LG7FLT4_2 | GATCAACAAG | AAGCACTGTC | 2 | 0 | 5011114690 | 0.000 |
| 7 | BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2 | ACCTTCGGAC | GACCGTAGAT | 1 | 0 | 629417981 | 0.000 |
| 7 | BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2 | ACCTTCGGAC | GACCGTAGAT | 2 | 0 | 629417981 | 0.000 |
| 7 | SkinN_FFPE_L01_RNA_01_B23LG7FLT4_2 | TATCATGTCG | TAATCTGCAC | 1 | 0 | 4352323283 | 0.000 |
| 7 | SkinN_FFPE_L01_RNA_01_B23LG7FLT4_2 | TATCATGTCG | TAATCTGCAC | 2 | 0 | 4352323283 | 0.000 |
| 7 | EndoN_FFPE_L02_RNA_01_B23LG7FLT4_2 | CGTCTAGTAA | TTAATCCAGC | 1 | 0 | 3354921775 | 0.000 |
| 7 | EndoN_FFPE_L02_RNA_01_B23LG7FLT4_2 | CGTCTAGTAA | TTAATCCAGC | 2 | 0 | 3354921775 | 0.000 |
| 7 | OvarianN_FFPE_L03_RNA_01_B23LG7FLT4_2 | TCTTAGGTGG | GATCACTGGT | 1 | 0 | 7395009523 | 0.000 |
| 7 | OvarianN_FFPE_L03_RNA_01_B23LG7FLT4_2 | TCTTAGGTGG | GATCACTGGT | 2 | 0 | 7395009523 | 0.000 |
| 7 | HeadNeckN_FFPE_L03_RNA_01_B23LG7FLT4_1 | TCGACGTTGG | GATAAGTGTG | 1 | 0 | 2789603898 | 0.000 |
| 7 | HeadNeckN_FFPE_L03_RNA_01_B23LG7FLT4_1 | TCGACGTTGG | GATAAGTGTG | 2 | 0 | 2789603898 | 0.000 |
| 7 | HeadNeckN_FFPE_L08_RNA_01_B23LG7FLT4_1 | AAGAGTACGA | GCAAGGACGT | 1 | 0 | 21213361991 | 0.000 |
| 7 | HeadNeckN_FFPE_L08_RNA_01_B23LG7FLT4_1 | AAGAGTACGA | GCAAGGACGT | 2 | 0 | 21213361991 | 0.000 |
| 7 | ColoN_FFPE_L02_RNA_01_B23LG7FLT4_1 | CACGAGAAGT | GTCTGCGTAG | 1 | 0 | 1517741015 | 0.000 |
| 7 | ColoN_FFPE_L02_RNA_01_B23LG7FLT4_1 | CACGAGAAGT | GTCTGCGTAG | 2 | 0 | 1517741015 | 0.000 |
| 7 | ColoN_FFPE_L07_RNA_01_B23LG7FLT4_1 | GACAATTAGC | CCGGTCATGA | 1 | 0 | 1774168611 | 0.000 |
| 7 | ColoN_FFPE_L07_RNA_01_B23LG7FLT4_1 | GACAATTAGC | CCGGTCATGA | 2 | 0 | 1774168611 | 0.000 |
| 7 | BreastNP_FFPE_L03_RNA_01_B23LG7FLT4_1 | TTCTACCGGC | TACTCGTAAG | 1 | 0 | 1591152836 | 0.000 |
| 7 | BreastNP_FFPE_L03_RNA_01_B23LG7FLT4_1 | TTCTACCGGC | TACTCGTAAG | 2 | 0 | 1591152836 | 0.000 |
| 7 | SkinN_FFPE_L02_RNA_01_B23LG7FLT4_1 | GTGAGAGTAT | ATCTGTGAGG | 1 | 0 | 3148784729 | 0.000 |
| 7 | SkinN_FFPE_L02_RNA_01_B23LG7FLT4_1 | GTGAGAGTAT | ATCTGTGAGG | 2 | 0 | 3148784729 | 0.000 |
| 7 | SkinN_FFPE_L07_RNA_01_B23LG7FLT4_1 | CTGGAGAATA | TCCATACAAC | 1 | 0 | 8371530751 | 0.000 |
| 7 | SkinN_FFPE_L07_RNA_01_B23LG7FLT4_1 | CTGGAGAATA | TCCATACAAC | 2 | 0 | 8371530751 | 0.000 |
| 7 | EndoN_FFPE_L03_RNA_01_B23LG7FLT4_1 | TGACAAGAGG | AATCTGTTGG | 1 | 0 | 4266715796 | 0.000 |
| 7 | EndoN_FFPE_L03_RNA_01_B23LG7FLT4_1 | TGACAAGAGG | AATCTGTTGG | 2 | 0 | 4266715796 | 0.000 |
| 7 | EndoN_FFPE_L08_RNA_01_B23LG7FLT4_1 | TGTTCGCTCT | ACTTGCGTGT | 1 | 0 | 1589263071 | 0.000 |
| 7 | EndoN_FFPE_L08_RNA_01_B23LG7FLT4_1 | TGTTCGCTCT | ACTTGCGTGT | 2 | 0 | 1589263071 | 0.000 |
| 7 | OvarianN_FFPE_L04_RNA_01_B23LG7FLT4_1 | AGGTATTCGG | AGATGTGCGC | 1 | 0 | 18977143346 | 0.000 |
| 7 | OvarianN_FFPE_L04_RNA_01_B23LG7FLT4_1 | AGGTATTCGG | AGATGTGCGC | 2 | 0 | 18977143346 | 0.000 |
| 7 | HeadNeckN_FFPE_L04_RNA_01_B23LG7FLT4_1 | ACGGCCTACA | TCTCACTCTA | 1 | 0 | 2214449428 | 0.000 |
| 7 | HeadNeckN_FFPE_L04_RNA_01_B23LG7FLT4_1 | ACGGCCTACA | TCTCACTCTA | 2 | 0 | 2214449428 | 0.000 |
| 7 | HeadNeckN_FFPE_L09_RNA_01_B23LG7FLT4_1 | CACGTAAGAG | TCAATCCGCG | 1 | 0 | 5594454719 | 0.000 |
| 7 | HeadNeckN_FFPE_L09_RNA_01_B23LG7FLT4_1 | CACGTAAGAG | TCAATCCGCG | 2 | 0 | 5594454719 | 0.000 |
| 7 | ColoN_FFPE_L03_RNA_01_B23LG7FLT4_1 | AATCGAACTC | ACGAACCTTA | 1 | 0 | 722641606 | 0.000 |
| 7 | ColoN_FFPE_L03_RNA_01_B23LG7FLT4_1 | AATCGAACTC | ACGAACCTTA | 2 | 0 | 722641606 | 0.000 |
| 7 | ColoN_FFPE_L08_RNA_01_B23LG7FLT4_1 | AGGCTGGAGA | CAACTGTCAT | 1 | 0 | 4401392243 | 0.000 |
| 7 | ColoN_FFPE_L08_RNA_01_B23LG7FLT4_1 | AGGCTGGAGA | CAACTGTCAT | 2 | 0 | 4401392243 | 0.000 |
| 7 | BreastNP_FFPE_L04_RNA_01_B23LG7FLT4_1 | TAAGCCACGC | TTACGAACGA | 1 | 0 | 1458029273 | 0.000 |
| 7 | BreastNP_FFPE_L04_RNA_01_B23LG7FLT4_1 | TAAGCCACGC | TTACGAACGA | 2 | 0 | 1458029273 | 0.000 |
| 7 | SkinN_FFPE_L08_RNA_01_B23LG7FLT4_1 | TCAATCAGAG | GACTCTGGTT | 1 | 0 | 2818700692 | 0.000 |
| 7 | SkinN_FFPE_L08_RNA_01_B23LG7FLT4_1 | TCAATCAGAG | GACTCTGGTT | 2 | 0 | 2818700692 | 0.000 |
| 7 | SkinN_FFPE_L04_RNA_01_B23LG7FLT4_1 | AACATAAGGC | GTTAGCTTAG | 1 | 0 | 13961762755 | 0.000 |
| 7 | SkinN_FFPE_L04_RNA_01_B23LG7FLT4_1 | AACATAAGGC | GTTAGCTTAG | 2 | 0 | 13961762755 | 0.000 |
| 7 | SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1 | TTGCAATGCG | CGAGACTTCA | 1 | 0 | 18375577315 | 0.000 |
| 7 | SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1 | TTGCAATGCG | CGAGACTTCA | 2 | 0 | 18375577315 | 0.000 |
| 7 | EndoN_FFPE_L01_RNA_01_B23LG7FLT4_1 | AACCGGCCTT | TGTTCAGATC | 1 | 0 | 24194993344 | 0.000 |
| 7 | EndoN_FFPE_L01_RNA_01_B23LG7FLT4_1 | AACCGGCCTT | TGTTCAGATC | 2 | 0 | 24194993344 | 0.000 |
| 7 | EndoN_FFPE_L04_RNA_01_B23LG7FLT4_1 | CATTATCGCT | CGAGTTGCTT | 1 | 0 | 19440590734 | 0.000 |
| 7 | EndoN_FFPE_L04_RNA_01_B23LG7FLT4_1 | CATTATCGCT | CGAGTTGCTT | 2 | 0 | 19440590734 | 0.000 |
| 7 | EndoN_FFPE_L05_RNA_01_B23LG7FLT4_1 | CATTGAGCTA | ACTTCACATC | 1 | 0 | 1187047089 | 0.000 |
| 7 | EndoN_FFPE_L05_RNA_01_B23LG7FLT4_1 | CATTGAGCTA | ACTTCACATC | 2 | 0 | 1187047089 | 0.000 |
| 7 | EndoN_FFPE_L06_RNA_01_B23LG7FLT4_1 | CTTCGGAATC | CGTCGGTAAG | 1 | 0 | 8267238071 | 0.000 |
| 7 | EndoN_FFPE_L06_RNA_01_B23LG7FLT4_1 | CTTCGGAATC | CGTCGGTAAG | 2 | 0 | 8267238071 | 0.000 |
| 7 | EndoN_FFPE_L09_RNA_01_B23LG7FLT4_1 | AACCACACTA | CCTCTGCTGA | 1 | 0 | 26286049800 | 0.000 |
| 7 | EndoN_FFPE_L09_RNA_01_B23LG7FLT4_1 | AACCACACTA | CCTCTGCTGA | 2 | 0 | 26286049800 | 0.000 |
| 7 | OvarianNP_FFPE_L01_RNA_01_B23LG7FLT4_1 | GTACAGCGGA | CAATCTGTGT | 1 | 0 | 632340737 | 0.000 |
| 7 | OvarianNP_FFPE_L01_RNA_01_B23LG7FLT4_1 | GTACAGCGGA | CAATCTGTGT | 2 | 0 | 632340737 | 0.000 |
| 7 | OvarianNP_FFPE_L02_RNA_01_B23LG7FLT4_1 | ACTTCAACAG | GCGTGAGCAT | 1 | 0 | 676297290 | 0.000 |
| 7 | OvarianNP_FFPE_L02_RNA_01_B23LG7FLT4_1 | ACTTCAACAG | GCGTGAGCAT | 2 | 0 | 676297290 | 0.000 |
| 7 | OvarianNP_FFPE_L05_RNA_01_B23LG7FLT4_1 | TGGACAATAG | GAGTCCTGTG | 1 | 0 | 1834474689 | 0.000 |
| 7 | OvarianNP_FFPE_L05_RNA_01_B23LG7FLT4_1 | TGGACAATAG | GAGTCCTGTG | 2 | 0 | 1834474689 | 0.000 |
| 7 | HeadNeckN_FFPE_L01_RNA_01_B23LG7FLT4_1 | TCACACGGAT | CTTCTGATCG | 1 | 0 | 5047624527 | 0.000 |
| 7 | HeadNeckN_FFPE_L01_RNA_01_B23LG7FLT4_1 | TCACACGGAT | CTTCTGATCG | 2 | 0 | 5047624527 | 0.000 |
| 7 | HeadNeckN_FFPE_L02_RNA_01_B23LG7FLT4_1 | AGGATACGGT | AACCACGTCA | 1 | 0 | 4068773218 | 0.000 |
| 7 | HeadNeckN_FFPE_L02_RNA_01_B23LG7FLT4_1 | AGGATACGGT | AACCACGTCA | 2 | 0 | 4068773218 | 0.000 |
| 7 | HeadNeckN_FFPE_L05_RNA_01_B23LG7FLT4_1 | GCTACAGGTC | TTATGCAGGA | 1 | 0 | 884604508 | 0.000 |
| 7 | HeadNeckN_FFPE_L05_RNA_01_B23LG7FLT4_1 | GCTACAGGTC | TTATGCAGGA | 2 | 0 | 884604508 | 0.000 |
| 7 | HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1 | GCCAAGTAAC | TGCGTGATGA | 1 | 0 | 2761926202 | 0.000 |
| 7 | HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1 | GCCAAGTAAC | TGCGTGATGA | 2 | 0 | 2761926202 | 0.000 |
| 7 | OvarianND_FFPE_L01_RNA_01_B23LG7FLT4_1 | TTGTGAAGGC | TCGTCAGTAC | 1 | 0 | 36013462854 | 0.000 |
| 7 | OvarianND_FFPE_L01_RNA_01_B23LG7FLT4_1 | TTGTGAAGGC | TCGTCAGTAC | 2 | 0 | 36013462854 | 0.000 |
| 7 | OvarianND_FFPE_L02_RNA_01_B23LG7FLT4_1 | GTCGACTCCT | TGCCGTTAGC | 1 | 0 | 31178855537 | 0.000 |
| 7 | OvarianND_FFPE_L02_RNA_01_B23LG7FLT4_1 | GTCGACTCCT | TGCCGTTAGC | 2 | 0 | 31178855537 | 0.000 |
| 7 | OvarianND_FFPE_L03_RNA_01_B23LG7FLT4_1 | CTGAGCTTGT | CTTCTTGCGT | 1 | 0 | 37515932484 | 0.000 |
| 7 | OvarianND_FFPE_L03_RNA_01_B23LG7FLT4_1 | CTGAGCTTGT | CTTCTTGCGT | 2 | 0 | 37515932484 | 0.000 |
| 7 | FFPE_HD789_01_RNA_0004_B23LG7FLT4_1 | CCTCTGTCAT | CGTATCGATT | 1 | 0 | 91088947513 | 0.000 |
| 7 | FFPE_HD789_01_RNA_0004_B23LG7FLT4_1 | CCTCTGTCAT | CGTATCGATT | 2 | 0 | 91088947513 | 0.000 |
| 7 | FFPE_V4_0001_RNA_0001_B23LG7FLT4_2 | GCAGATGTAA | TACACGCCTC | 1 | 0 | 72683690695 | 0.000 |
| 7 | FFPE_V4_0001_RNA_0001_B23LG7FLT4_2 | GCAGATGTAA | TACACGCCTC | 2 | 0 | 72683690695 | 0.000 |
| 7 | NTC_0001_0001_B23LG7FLT4_2 | CTCATCATCT | TAAGCCTCTA | 1 | 0 | 44464668 | 0.000 |
| 7 | NTC_0001_0001_B23LG7FLT4_2 | CTCATCATCT | TAAGCCTCTA | 2 | 0 | 44464668 | 0.000 |
| 7 | Undetermined | 1 | 0 | 42095312655 | 0.000 | ||
| 7 | Undetermined | 2 | 0 | 42095312655 | 0.000 |
99 rows