File Info
- Filename
- Demultiplex_Stats.csv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0008_exp0011/B23LG7FLT4/nfcore_rnafusion__e7be3c7a--20260528-101300/bclconvert/L007/Reports/Demultiplex_Stats.csv
- Size
- 5.7 KB
- Workflow Run
- dev_rna_exp0008_exp0011-e7be3c7a
- Published
- May 28, 2026 11:09 AM
Content
View in new tab| Lane | SampleID | Index | # Reads | # Perfect Index Reads | # One Mismatch Index Reads | # Two Mismatch Index Reads | % Reads | % Perfect Index Reads | % One Mismatch Index Reads | % Two Mismatch Index Reads |
| 7 | LungN_FFPE_L01_RNA_01_B23LG7FLT4_1 | CAACCATACA-ACCGGTTATA | 207067703 | 201574179 | 5493524 | 0 | 0.0504 | 0.9735 | 0.0265 | 0.0000 |
| 7 | LungN_FFPE_L02_RNA_01_B23LG7FLT4_1 | GTAGGCCGTT-GCCACTGTCT | 45827731 | 44858661 | 969070 | 0 | 0.0112 | 0.9789 | 0.0211 | 0.0000 |
| 7 | LungN_FFPE_L03_RNA_01_B23LG7FLT4_1 | CGGATTGATC-AGTCACAACA | 154793500 | 151597797 | 3195703 | 0 | 0.0377 | 0.9794 | 0.0206 | 0.0000 |
| 7 | BreastNB_FFPE_L01_RNA_01_B23LG7FLT4_1 | ACTGGCAAGA-TGTTGTCCAT | 13258964 | 13048697 | 210267 | 0 | 0.0032 | 0.9841 | 0.0159 | 0.0000 |
| 7 | BreastNB_FFPE_L02_RNA_01_B23LG7FLT4_1 | ACAAGAACCT-CGATACTGAA | 14115817 | 13809088 | 306729 | 0 | 0.0034 | 0.9783 | 0.0217 | 0.0000 |
| 7 | BreastNB_FFPE_L03_RNA_01_B23LG7FLT4_1 | AGAGTATGTG-AGATGGCTTC | 20443815 | 20065893 | 377922 | 0 | 0.0050 | 0.9815 | 0.0185 | 0.0000 |
| 7 | ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2 | ACTTAGATCG-CGGAATTCTT | 68250950 | 65494446 | 2756504 | 0 | 0.0166 | 0.9596 | 0.0404 | 0.0000 |
| 7 | ColoN_FFPE_L06_RNA_01_B23LG7FLT4_2 | GATCAACAAG-AAGCACTGTC | 33186190 | 32504777 | 681413 | 0 | 0.0081 | 0.9795 | 0.0205 | 0.0000 |
| 7 | BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2 | ACCTTCGGAC-GACCGTAGAT | 4168331 | 4089787 | 78544 | 0 | 0.0010 | 0.9812 | 0.0188 | 0.0000 |
| 7 | SkinN_FFPE_L01_RNA_01_B23LG7FLT4_2 | TATCATGTCG-TAATCTGCAC | 28823333 | 28339687 | 483646 | 0 | 0.0070 | 0.9832 | 0.0168 | 0.0000 |
| 7 | EndoN_FFPE_L02_RNA_01_B23LG7FLT4_2 | CGTCTAGTAA-TTAATCCAGC | 22218025 | 21868830 | 349195 | 0 | 0.0054 | 0.9843 | 0.0157 | 0.0000 |
| 7 | OvarianN_FFPE_L03_RNA_01_B23LG7FLT4_2 | TCTTAGGTGG-GATCACTGGT | 48973573 | 48191495 | 782078 | 0 | 0.0119 | 0.9840 | 0.0160 | 0.0000 |
| 7 | HeadNeckN_FFPE_L03_RNA_01_B23LG7FLT4_1 | TCGACGTTGG-GATAAGTGTG | 18474198 | 17664112 | 810086 | 0 | 0.0045 | 0.9562 | 0.0438 | 0.0000 |
| 7 | HeadNeckN_FFPE_L08_RNA_01_B23LG7FLT4_1 | AAGAGTACGA-GCAAGGACGT | 140485841 | 137873836 | 2612005 | 0 | 0.0342 | 0.9814 | 0.0186 | 0.0000 |
| 7 | ColoN_FFPE_L02_RNA_01_B23LG7FLT4_1 | CACGAGAAGT-GTCTGCGTAG | 10051265 | 9761668 | 289597 | 0 | 0.0024 | 0.9712 | 0.0288 | 0.0000 |
| 7 | ColoN_FFPE_L07_RNA_01_B23LG7FLT4_1 | GACAATTAGC-CCGGTCATGA | 11749461 | 11511313 | 238148 | 0 | 0.0029 | 0.9797 | 0.0203 | 0.0000 |
| 7 | BreastNP_FFPE_L03_RNA_01_B23LG7FLT4_1 | TTCTACCGGC-TACTCGTAAG | 10537436 | 10365030 | 172406 | 0 | 0.0026 | 0.9836 | 0.0164 | 0.0000 |
| 7 | SkinN_FFPE_L02_RNA_01_B23LG7FLT4_1 | GTGAGAGTAT-ATCTGTGAGG | 20852879 | 20457515 | 395364 | 0 | 0.0051 | 0.9810 | 0.0190 | 0.0000 |
| 7 | SkinN_FFPE_L07_RNA_01_B23LG7FLT4_1 | CTGGAGAATA-TCCATACAAC | 55440601 | 54193673 | 1246928 | 0 | 0.0135 | 0.9775 | 0.0225 | 0.0000 |
| 7 | EndoN_FFPE_L03_RNA_01_B23LG7FLT4_1 | TGACAAGAGG-AATCTGTTGG | 28256396 | 27755425 | 500971 | 0 | 0.0069 | 0.9823 | 0.0177 | 0.0000 |
| 7 | EndoN_FFPE_L08_RNA_01_B23LG7FLT4_1 | TGTTCGCTCT-ACTTGCGTGT | 10524921 | 10307822 | 217099 | 0 | 0.0026 | 0.9794 | 0.0206 | 0.0000 |
| 7 | OvarianN_FFPE_L04_RNA_01_B23LG7FLT4_1 | AGGTATTCGG-AGATGTGCGC | 125676446 | 121096326 | 4580120 | 0 | 0.0306 | 0.9636 | 0.0364 | 0.0000 |
| 7 | HeadNeckN_FFPE_L04_RNA_01_B23LG7FLT4_1 | ACGGCCTACA-TCTCACTCTA | 14665228 | 14417030 | 248198 | 0 | 0.0036 | 0.9831 | 0.0169 | 0.0000 |
| 7 | HeadNeckN_FFPE_L09_RNA_01_B23LG7FLT4_1 | CACGTAAGAG-TCAATCCGCG | 37049369 | 34413042 | 2636327 | 0 | 0.0090 | 0.9288 | 0.0712 | 0.0000 |
| 7 | ColoN_FFPE_L03_RNA_01_B23LG7FLT4_1 | AATCGAACTC-ACGAACCTTA | 4785706 | 4679772 | 105934 | 0 | 0.0012 | 0.9779 | 0.0221 | 0.0000 |
| 7 | ColoN_FFPE_L08_RNA_01_B23LG7FLT4_1 | AGGCTGGAGA-CAACTGTCAT | 29148293 | 28610271 | 538022 | 0 | 0.0071 | 0.9815 | 0.0185 | 0.0000 |
| 7 | BreastNP_FFPE_L04_RNA_01_B23LG7FLT4_1 | TAAGCCACGC-TTACGAACGA | 9655823 | 9507334 | 148489 | 0 | 0.0023 | 0.9846 | 0.0154 | 0.0000 |
| 7 | SkinN_FFPE_L08_RNA_01_B23LG7FLT4_1 | TCAATCAGAG-GACTCTGGTT | 18666892 | 18149287 | 517605 | 0 | 0.0045 | 0.9723 | 0.0277 | 0.0000 |
| 7 | SkinN_FFPE_L04_RNA_01_B23LG7FLT4_1 | AACATAAGGC-GTTAGCTTAG | 92462005 | 90658742 | 1803263 | 0 | 0.0225 | 0.9805 | 0.0195 | 0.0000 |
| 7 | SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1 | TTGCAATGCG-CGAGACTTCA | 121692565 | 118884032 | 2808533 | 0 | 0.0296 | 0.9769 | 0.0231 | 0.0000 |
| 7 | EndoN_FFPE_L01_RNA_01_B23LG7FLT4_1 | AACCGGCCTT-TGTTCAGATC | 160231744 | 157109903 | 3121841 | 0 | 0.0390 | 0.9805 | 0.0195 | 0.0000 |
| 7 | EndoN_FFPE_L04_RNA_01_B23LG7FLT4_1 | CATTATCGCT-CGAGTTGCTT | 128745634 | 126528333 | 2217301 | 0 | 0.0313 | 0.9828 | 0.0172 | 0.0000 |
| 7 | EndoN_FFPE_L05_RNA_01_B23LG7FLT4_1 | CATTGAGCTA-ACTTCACATC | 7861239 | 7702672 | 158567 | 0 | 0.0019 | 0.9798 | 0.0202 | 0.0000 |
| 7 | EndoN_FFPE_L06_RNA_01_B23LG7FLT4_1 | CTTCGGAATC-CGTCGGTAAG | 54749921 | 53370203 | 1379718 | 0 | 0.0133 | 0.9748 | 0.0252 | 0.0000 |
| 7 | EndoN_FFPE_L09_RNA_01_B23LG7FLT4_1 | AACCACACTA-CCTCTGCTGA | 174079800 | 170732788 | 3347012 | 0 | 0.0424 | 0.9808 | 0.0192 | 0.0000 |
| 7 | OvarianNP_FFPE_L01_RNA_01_B23LG7FLT4_1 | GTACAGCGGA-CAATCTGTGT | 4187687 | 4121876 | 65811 | 0 | 0.0010 | 0.9843 | 0.0157 | 0.0000 |
| 7 | OvarianNP_FFPE_L02_RNA_01_B23LG7FLT4_1 | ACTTCAACAG-GCGTGAGCAT | 4478790 | 4388260 | 90530 | 0 | 0.0011 | 0.9798 | 0.0202 | 0.0000 |
| 7 | OvarianNP_FFPE_L05_RNA_01_B23LG7FLT4_1 | TGGACAATAG-GAGTCCTGTG | 12148839 | 11884567 | 264272 | 0 | 0.0030 | 0.9782 | 0.0218 | 0.0000 |
| 7 | HeadNeckN_FFPE_L01_RNA_01_B23LG7FLT4_1 | TCACACGGAT-CTTCTGATCG | 33427977 | 32949086 | 478891 | 0 | 0.0081 | 0.9857 | 0.0143 | 0.0000 |
| 7 | HeadNeckN_FFPE_L02_RNA_01_B23LG7FLT4_1 | AGGATACGGT-AACCACGTCA | 26945518 | 26451162 | 494356 | 0 | 0.0066 | 0.9817 | 0.0183 | 0.0000 |
| 7 | HeadNeckN_FFPE_L05_RNA_01_B23LG7FLT4_1 | GCTACAGGTC-TTATGCAGGA | 5858308 | 5727361 | 130947 | 0 | 0.0014 | 0.9776 | 0.0224 | 0.0000 |
| 7 | HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1 | GCCAAGTAAC-TGCGTGATGA | 18290902 | 17778262 | 512640 | 0 | 0.0045 | 0.9720 | 0.0280 | 0.0000 |
| 7 | OvarianND_FFPE_L01_RNA_01_B23LG7FLT4_1 | TTGTGAAGGC-TCGTCAGTAC | 238499754 | 234259718 | 4240036 | 0 | 0.0580 | 0.9822 | 0.0178 | 0.0000 |
| 7 | OvarianND_FFPE_L02_RNA_01_B23LG7FLT4_1 | GTCGACTCCT-TGCCGTTAGC | 206482487 | 200471818 | 6010669 | 0 | 0.0502 | 0.9709 | 0.0291 | 0.0000 |
| 7 | OvarianND_FFPE_L03_RNA_01_B23LG7FLT4_1 | CTGAGCTTGT-CTTCTTGCGT | 248449884 | 244908640 | 3541244 | 0 | 0.0605 | 0.9857 | 0.0143 | 0.0000 |
| 7 | FFPE_HD789_01_RNA_0004_B23LG7FLT4_1 | CCTCTGTCAT-CGTATCGATT | 603238063 | 594693045 | 8545018 | 0 | 0.1468 | 0.9858 | 0.0142 | 0.0000 |
| 7 | FFPE_V4_0001_RNA_0001_B23LG7FLT4_2 | GCAGATGTAA-TACACGCCTC | 481348945 | 471421841 | 9927104 | 0 | 0.1171 | 0.9794 | 0.0206 | 0.0000 |
| 7 | NTC_0001_0001_B23LG7FLT4_2 | CTCATCATCT-TAAGCCTCTA | 294468 | 286610 | 7858 | 0 | 0.0001 | 0.9733 | 0.0267 | 0.0000 |
| 7 | Undetermined | 278776905 | 278776905 | 0 | 0 | 0.0678 | 1.0000 | 0.0000 | 0.0000 |
50 rows