File Info

Filename
output/Logs/Info.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/ae687d7ef304fa0e65009f61ac0a05/output/Logs/Info.log
Size
4.2 KB
Attempt
2026-05-28T17:45:38Z thread 338 Sample sheet being processed by common lib? Yes
2026-05-28T17:45:38Z thread 338 SampleSheet Settings: 
2026-05-28T17:45:38Z thread 338   FastqCompressionFormat = gzip
2026-05-28T17:45:38Z thread 338   NoLaneSplitting = FALSE
2026-05-28T17:45:38Z thread 338   OverrideCycles = Y151;I10;I10;Y151
2026-05-28T17:45:38Z thread 338   SoftwareVersion = 4.3.6
2026-05-28T17:45:38Z thread 338 
2026-05-28T17:45:38Z thread 338 Index Read 2 (i5): The barcode and UMI outputs will be processed and output in Reverse Complement of Sample Sheet inputs. OverrideCycles bases for this read will be interpreted in reverse.
2026-05-28T17:45:38Z thread 338 shared-thread-linux-native-asio output is disabled
2026-05-28T17:45:38Z thread 338 bcl-convert Version 4.4.6
2026-05-28T17:45:38Z thread 338 Copyright (c) 2014-2025 Illumina, Inc.
2026-05-28T17:45:38Z thread 338 Command Line: --tiles s_7 --output-directory output --bcl-input-directory 20260204_LH00166_0238_B23LG7FLT4 --sample-sheet bclconvert_samplesheet.csv 
2026-05-28T17:45:38Z thread 338 Conversion Begins.
2026-05-28T17:45:38Z thread 338 Input BCL Information:
2026-05-28T17:45:38Z thread 338     Read Structure: 2026-05-28T17:45:38Z thread 338 Y1512026-05-28T17:45:38Z thread 338 ;2026-05-28T17:45:38Z thread 338 I102026-05-28T17:45:38Z thread 338 ;2026-05-28T17:45:38Z thread 338 I102026-05-28T17:45:38Z thread 338 ;2026-05-28T17:45:38Z thread 338 Y1512026-05-28T17:45:38Z thread 338 
2026-05-28T17:45:38Z thread 338     RunInfo.xml file lists: 8 lanes, 6272 tiles
2026-05-28T17:45:38Z thread 338     BCL file format: cbcl
2026-05-28T17:45:38Z thread 338     Positions file format: slocs
2026-05-28T17:45:38Z thread 338     Filter file format: filter
2026-05-28T17:45:38Z thread 338 Conversion Information:
2026-05-28T17:45:38Z thread 338     Tile filtering: converting 784/6272 tiles
2026-05-28T17:45:38Z thread 338     Sample Count for Lane 1: 48
2026-05-28T17:45:38Z thread 338     Lane 1 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-28T17:45:38Z thread 338     Sample Count for Lane 2: 48
2026-05-28T17:45:38Z thread 338     Lane 2 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-28T17:45:38Z thread 338     Sample Count for Lane 3: 48
2026-05-28T17:45:38Z thread 338     Lane 3 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-28T17:45:38Z thread 338     Sample Count for Lane 4: 48
2026-05-28T17:45:38Z thread 338     Lane 4 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-28T17:45:38Z thread 338     Sample Count for Lane 5: 48
2026-05-28T17:45:38Z thread 338     Lane 5 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-28T17:45:38Z thread 338     Sample Count for Lane 6: 48
2026-05-28T17:45:38Z thread 338     Lane 6 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-28T17:45:38Z thread 338     Sample Count for Lane 7: 48
2026-05-28T17:45:38Z thread 338     Sample Count for Lane 8: 48
2026-05-28T17:45:38Z thread 338     Lane 8 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-28T17:45:38Z thread 338     Expected number of sample FASTQ files to be created: 96
2026-05-28T17:45:38Z thread 338 # CPU hw threads available: 64
2026-05-28T17:45:38Z thread 338 Parallel Tiles: 4. Threads Per Tile: 16
2026-05-28T17:45:38Z thread 338 SW compressors: 64
2026-05-28T17:45:38Z thread 338 SW decompressors: 32
2026-05-28T17:45:38Z thread 338 SW FASTQ compression level: 1
2026-05-28T18:05:20Z thread 338 Lane 7 Post-run Information:
2026-05-28T18:05:20Z thread 338     Total clusters: 4109400122
2026-05-28T18:05:20Z thread 338     Total Genomic Reads: 8218800244
2026-05-28T18:05:20Z thread 338     Total Genomic Input Gigabases 1241.04
2026-05-28T18:05:20Z thread 338     Minimum reads for a sample: 588936
2026-05-28T18:05:20Z thread 338     Maximum reads for a sample: 1206476126
2026-05-28T18:05:20Z thread 338     Average reads per sample: 159609300.71
2026-05-28T18:05:20Z thread 338     Undetermined reads: 557553810
2026-05-28T18:05:22Z thread 338 Conversion Complete.