File Info

Filename
output/Logs/Info.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/05abe66db5b5c0eb0fe3f321352997/output/Logs/Info.log
Size
4.2 KB
Attempt
2026-05-28T17:45:41Z thread 364 Sample sheet being processed by common lib? Yes
2026-05-28T17:45:41Z thread 364 SampleSheet Settings: 
2026-05-28T17:45:41Z thread 364   FastqCompressionFormat = gzip
2026-05-28T17:45:41Z thread 364   NoLaneSplitting = FALSE
2026-05-28T17:45:41Z thread 364   OverrideCycles = Y151;I10;I10;Y151
2026-05-28T17:45:41Z thread 364   SoftwareVersion = 4.3.6
2026-05-28T17:45:41Z thread 364 
2026-05-28T17:45:41Z thread 364 Index Read 2 (i5): The barcode and UMI outputs will be processed and output in Reverse Complement of Sample Sheet inputs. OverrideCycles bases for this read will be interpreted in reverse.
2026-05-28T17:45:42Z thread 364 shared-thread-linux-native-asio output is disabled
2026-05-28T17:45:42Z thread 364 bcl-convert Version 4.4.6
2026-05-28T17:45:42Z thread 364 Copyright (c) 2014-2025 Illumina, Inc.
2026-05-28T17:45:42Z thread 364 Command Line: --tiles s_1 --output-directory output --bcl-input-directory 20260204_LH00166_0238_B23LG7FLT4 --sample-sheet bclconvert_samplesheet.csv 
2026-05-28T17:45:42Z thread 364 Conversion Begins.
2026-05-28T17:45:42Z thread 364 Input BCL Information:
2026-05-28T17:45:42Z thread 364     Read Structure: 2026-05-28T17:45:42Z thread 364 Y1512026-05-28T17:45:42Z thread 364 ;2026-05-28T17:45:42Z thread 364 I102026-05-28T17:45:42Z thread 364 ;2026-05-28T17:45:42Z thread 364 I102026-05-28T17:45:42Z thread 364 ;2026-05-28T17:45:42Z thread 364 Y1512026-05-28T17:45:42Z thread 364 
2026-05-28T17:45:42Z thread 364     RunInfo.xml file lists: 8 lanes, 6272 tiles
2026-05-28T17:45:42Z thread 364     BCL file format: cbcl
2026-05-28T17:45:42Z thread 364     Positions file format: slocs
2026-05-28T17:45:42Z thread 364     Filter file format: filter
2026-05-28T17:45:42Z thread 364 Conversion Information:
2026-05-28T17:45:42Z thread 364     Tile filtering: converting 784/6272 tiles
2026-05-28T17:45:42Z thread 364     Sample Count for Lane 1: 48
2026-05-28T17:45:42Z thread 364     Sample Count for Lane 2: 48
2026-05-28T17:45:42Z thread 364     Lane 2 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-28T17:45:42Z thread 364     Sample Count for Lane 3: 48
2026-05-28T17:45:42Z thread 364     Lane 3 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-28T17:45:42Z thread 364     Sample Count for Lane 4: 48
2026-05-28T17:45:42Z thread 364     Lane 4 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-28T17:45:42Z thread 364     Sample Count for Lane 5: 48
2026-05-28T17:45:42Z thread 364     Lane 5 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-28T17:45:42Z thread 364     Sample Count for Lane 6: 48
2026-05-28T17:45:42Z thread 364     Lane 6 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-28T17:45:42Z thread 364     Sample Count for Lane 7: 48
2026-05-28T17:45:42Z thread 364     Lane 7 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-28T17:45:42Z thread 364     Sample Count for Lane 8: 48
2026-05-28T17:45:42Z thread 364     Lane 8 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-28T17:45:42Z thread 364     Expected number of sample FASTQ files to be created: 96
2026-05-28T17:45:42Z thread 364 # CPU hw threads available: 64
2026-05-28T17:45:42Z thread 364 Parallel Tiles: 4. Threads Per Tile: 16
2026-05-28T17:45:42Z thread 364 SW compressors: 64
2026-05-28T17:45:42Z thread 364 SW decompressors: 32
2026-05-28T17:45:42Z thread 364 SW FASTQ compression level: 1
2026-05-28T18:07:11Z thread 364 Lane 1 Post-run Information:
2026-05-28T18:07:11Z thread 364     Total clusters: 4090325735
2026-05-28T18:07:11Z thread 364     Total Genomic Reads: 8180651470
2026-05-28T18:07:11Z thread 364     Total Genomic Input Gigabases 1235.28
2026-05-28T18:07:11Z thread 364     Minimum reads for a sample: 437260
2026-05-28T18:07:11Z thread 364     Maximum reads for a sample: 327957262
2026-05-28T18:07:11Z thread 364     Average reads per sample: 159999646.58
2026-05-28T18:07:11Z thread 364     Undetermined reads: 500668434
2026-05-28T18:07:13Z thread 364 Conversion Complete.