File Info

Filename
output/Logs/Info.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/883c7474905e9e6c72484807fe4472/output/Logs/Info.log
Size
4.2 KB
Attempt
2026-05-28T17:45:38Z thread 345 Sample sheet being processed by common lib? Yes
2026-05-28T17:45:38Z thread 345 SampleSheet Settings: 
2026-05-28T17:45:38Z thread 345   FastqCompressionFormat = gzip
2026-05-28T17:45:38Z thread 345   NoLaneSplitting = FALSE
2026-05-28T17:45:38Z thread 345   OverrideCycles = Y151;I10;I10;Y151
2026-05-28T17:45:38Z thread 345   SoftwareVersion = 4.3.6
2026-05-28T17:45:38Z thread 345 
2026-05-28T17:45:38Z thread 345 Index Read 2 (i5): The barcode and UMI outputs will be processed and output in Reverse Complement of Sample Sheet inputs. OverrideCycles bases for this read will be interpreted in reverse.
2026-05-28T17:45:38Z thread 345 shared-thread-linux-native-asio output is disabled
2026-05-28T17:45:38Z thread 345 bcl-convert Version 4.4.6
2026-05-28T17:45:38Z thread 345 Copyright (c) 2014-2025 Illumina, Inc.
2026-05-28T17:45:38Z thread 345 Command Line: --tiles s_4 --output-directory output --bcl-input-directory 20260204_LH00166_0238_B23LG7FLT4 --sample-sheet bclconvert_samplesheet.csv 
2026-05-28T17:45:38Z thread 345 Conversion Begins.
2026-05-28T17:45:38Z thread 345 Input BCL Information:
2026-05-28T17:45:38Z thread 345     Read Structure: 2026-05-28T17:45:38Z thread 345 Y1512026-05-28T17:45:38Z thread 345 ;2026-05-28T17:45:38Z thread 345 I102026-05-28T17:45:38Z thread 345 ;2026-05-28T17:45:38Z thread 345 I102026-05-28T17:45:38Z thread 345 ;2026-05-28T17:45:38Z thread 345 Y1512026-05-28T17:45:38Z thread 345 
2026-05-28T17:45:38Z thread 345     RunInfo.xml file lists: 8 lanes, 6272 tiles
2026-05-28T17:45:38Z thread 345     BCL file format: cbcl
2026-05-28T17:45:38Z thread 345     Positions file format: slocs
2026-05-28T17:45:38Z thread 345     Filter file format: filter
2026-05-28T17:45:38Z thread 345 Conversion Information:
2026-05-28T17:45:38Z thread 345     Tile filtering: converting 784/6272 tiles
2026-05-28T17:45:38Z thread 345     Sample Count for Lane 1: 48
2026-05-28T17:45:38Z thread 345     Lane 1 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-28T17:45:38Z thread 345     Sample Count for Lane 2: 48
2026-05-28T17:45:38Z thread 345     Lane 2 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-28T17:45:38Z thread 345     Sample Count for Lane 3: 48
2026-05-28T17:45:38Z thread 345     Lane 3 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-28T17:45:38Z thread 345     Sample Count for Lane 4: 48
2026-05-28T17:45:38Z thread 345     Sample Count for Lane 5: 48
2026-05-28T17:45:38Z thread 345     Lane 5 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-28T17:45:38Z thread 345     Sample Count for Lane 6: 48
2026-05-28T17:45:38Z thread 345     Lane 6 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-28T17:45:38Z thread 345     Sample Count for Lane 7: 48
2026-05-28T17:45:38Z thread 345     Lane 7 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-28T17:45:38Z thread 345     Sample Count for Lane 8: 48
2026-05-28T17:45:38Z thread 345     Lane 8 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-05-28T17:45:38Z thread 345     Expected number of sample FASTQ files to be created: 96
2026-05-28T17:45:38Z thread 345 # CPU hw threads available: 64
2026-05-28T17:45:38Z thread 345 Parallel Tiles: 4. Threads Per Tile: 16
2026-05-28T17:45:38Z thread 345 SW compressors: 64
2026-05-28T17:45:38Z thread 345 SW decompressors: 32
2026-05-28T17:45:38Z thread 345 SW FASTQ compression level: 1
2026-05-28T18:01:47Z thread 345 Lane 4 Post-run Information:
2026-05-28T18:01:47Z thread 345     Total clusters: 4059169203
2026-05-28T18:01:47Z thread 345     Total Genomic Reads: 8118338406
2026-05-28T18:01:47Z thread 345     Total Genomic Input Gigabases 1225.87
2026-05-28T18:01:47Z thread 345     Minimum reads for a sample: 440772
2026-05-28T18:01:47Z thread 345     Maximum reads for a sample: 328522388
2026-05-28T18:01:47Z thread 345     Average reads per sample: 158794970.25
2026-05-28T18:01:47Z thread 345     Undetermined reads: 496179834
2026-05-28T18:01:49Z thread 345 Conversion Complete.