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Quality_Metrics.csv
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s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0008_exp0011/B23LG7FLT4/nfcore_rnafusion__e7be3c7a--20260528-111100/bclconvert/L006/Reports/Quality_Metrics.csv
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dev_rna_exp0008_exp0011-e7be3c7a_b
Published
May 28, 2026 11:54 AM

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Lane SampleID index index2 ReadNumber Yield YieldQ30 QualityScoreSum Mean Quality Score (PF) % Q30
6 LungN_FFPE_L01_RNA_01_B23LG7FLT4_1 CAACCATACA ACCGGTTATA 1 31480486191 29145801128 1207871276531 38.37 0.93
6 LungN_FFPE_L01_RNA_01_B23LG7FLT4_1 CAACCATACA ACCGGTTATA 2 31480486191 29262476819 1212825778757 38.53 0.93
6 LungN_FFPE_L02_RNA_01_B23LG7FLT4_1 GTAGGCCGTT GCCACTGTCT 1 6948774172 6262834730 262897970291 37.83 0.90
6 LungN_FFPE_L02_RNA_01_B23LG7FLT4_1 GTAGGCCGTT GCCACTGTCT 2 6948774172 6413864650 266798421727 38.40 0.92
6 LungN_FFPE_L03_RNA_01_B23LG7FLT4_1 CGGATTGATC AGTCACAACA 1 23508342890 21892813139 905360993072 38.51 0.93
6 LungN_FFPE_L03_RNA_01_B23LG7FLT4_1 CGGATTGATC AGTCACAACA 2 23508342890 21911088870 906651678078 38.57 0.93
6 BreastNB_FFPE_L01_RNA_01_B23LG7FLT4_1 ACTGGCAAGA TGTTGTCCAT 1 2011472057 1720416725 73981236146 36.78 0.86
6 BreastNB_FFPE_L01_RNA_01_B23LG7FLT4_1 ACTGGCAAGA TGTTGTCCAT 2 2011472057 1823343218 76635929591 38.10 0.91
6 BreastNB_FFPE_L02_RNA_01_B23LG7FLT4_1 ACAAGAACCT CGATACTGAA 1 2133268657 1854184832 79155844769 37.11 0.87
6 BreastNB_FFPE_L02_RNA_01_B23LG7FLT4_1 ACAAGAACCT CGATACTGAA 2 2133268657 1921385796 80929261002 37.94 0.90
6 BreastNB_FFPE_L03_RNA_01_B23LG7FLT4_1 AGAGTATGTG AGATGGCTTC 1 3089901373 2702269762 114943638349 37.20 0.87
6 BreastNB_FFPE_L03_RNA_01_B23LG7FLT4_1 AGAGTATGTG AGATGGCTTC 2 3089901373 2851373449 118712967598 38.42 0.92
6 ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2 ACTTAGATCG CGGAATTCTT 1 10307218022 9290292857 389750482157 37.81 0.90
6 ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2 ACTTAGATCG CGGAATTCTT 2 10307218022 9438684032 393997566998 38.23 0.92
6 ColoN_FFPE_L06_RNA_01_B23LG7FLT4_2 GATCAACAAG AAGCACTGTC 1 5014365418 4415392360 187310284228 37.35 0.88
6 ColoN_FFPE_L06_RNA_01_B23LG7FLT4_2 GATCAACAAG AAGCACTGTC 2 5014365418 4531293786 190514486970 37.99 0.90
6 BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2 ACCTTCGGAC GACCGTAGAT 1 630713712 536292883 23214130021 36.81 0.85
6 BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2 ACCTTCGGAC GACCGTAGAT 2 630713712 558650123 23822453414 37.77 0.89
6 SkinN_FFPE_L01_RNA_01_B23LG7FLT4_2 TATCATGTCG TAATCTGCAC 1 4345875583 3857317235 162943608653 37.49 0.89
6 SkinN_FFPE_L01_RNA_01_B23LG7FLT4_2 TATCATGTCG TAATCTGCAC 2 4345875583 3985313041 166339217419 38.28 0.92
6 EndoN_FFPE_L02_RNA_01_B23LG7FLT4_2 CGTCTAGTAA TTAATCCAGC 1 3345405604 2871447276 123151446597 36.81 0.86
6 EndoN_FFPE_L02_RNA_01_B23LG7FLT4_2 CGTCTAGTAA TTAATCCAGC 2 3345405604 3049092261 127711889655 38.18 0.91
6 OvarianN_FFPE_L03_RNA_01_B23LG7FLT4_2 TCTTAGGTGG GATCACTGGT 1 7378944029 6326737648 271764494014 36.83 0.86
6 OvarianN_FFPE_L03_RNA_01_B23LG7FLT4_2 TCTTAGGTGG GATCACTGGT 2 7378944029 6562646940 277784981406 37.65 0.89
6 HeadNeckN_FFPE_L03_RNA_01_B23LG7FLT4_1 TCGACGTTGG GATAAGTGTG 1 2789520999 2445920915 103915334138 37.25 0.88
6 HeadNeckN_FFPE_L03_RNA_01_B23LG7FLT4_1 TCGACGTTGG GATAAGTGTG 2 2789520999 2518077691 105836804023 37.94 0.90
6 HeadNeckN_FFPE_L08_RNA_01_B23LG7FLT4_1 AAGAGTACGA GCAAGGACGT 1 21295719656 19693691370 816505155507 38.34 0.92
6 HeadNeckN_FFPE_L08_RNA_01_B23LG7FLT4_1 AAGAGTACGA GCAAGGACGT 2 21295719656 19900234712 822638529770 38.63 0.93
6 ColoN_FFPE_L02_RNA_01_B23LG7FLT4_1 CACGAGAAGT GTCTGCGTAG 1 1516679183 1272899087 55364258816 36.50 0.84
6 ColoN_FFPE_L02_RNA_01_B23LG7FLT4_1 CACGAGAAGT GTCTGCGTAG 2 1516679183 1367985678 57650261406 38.01 0.90
6 ColoN_FFPE_L07_RNA_01_B23LG7FLT4_1 GACAATTAGC CCGGTCATGA 1 1769988025 1438952830 63415756012 35.83 0.81
6 ColoN_FFPE_L07_RNA_01_B23LG7FLT4_1 GACAATTAGC CCGGTCATGA 2 1769988025 1604359033 67485897826 38.13 0.91
6 BreastNP_FFPE_L03_RNA_01_B23LG7FLT4_1 TTCTACCGGC TACTCGTAAG 1 1587553902 1341078817 58107390436 36.60 0.84
6 BreastNP_FFPE_L03_RNA_01_B23LG7FLT4_1 TTCTACCGGC TACTCGTAAG 2 1587553902 1435338812 60425537840 38.06 0.90
6 SkinN_FFPE_L02_RNA_01_B23LG7FLT4_1 GTGAGAGTAT ATCTGTGAGG 1 3132107383 2898899589 120390069636 38.44 0.93
6 SkinN_FFPE_L02_RNA_01_B23LG7FLT4_1 GTGAGAGTAT ATCTGTGAGG 2 3132107383 2881685876 120182880074 38.37 0.92
6 SkinN_FFPE_L07_RNA_01_B23LG7FLT4_1 CTGGAGAATA TCCATACAAC 1 8386859818 7589041682 317839161644 37.90 0.90
6 SkinN_FFPE_L07_RNA_01_B23LG7FLT4_1 CTGGAGAATA TCCATACAAC 2 8386859818 7796638315 323361487195 38.56 0.93
6 EndoN_FFPE_L03_RNA_01_B23LG7FLT4_1 TGACAAGAGG AATCTGTTGG 1 4274701582 3786743740 160088540179 37.45 0.89
6 EndoN_FFPE_L03_RNA_01_B23LG7FLT4_1 TGACAAGAGG AATCTGTTGG 2 4274701582 3942630974 164116575611 38.39 0.92
6 EndoN_FFPE_L08_RNA_01_B23LG7FLT4_1 TGTTCGCTCT ACTTGCGTGT 1 1586359492 1414857429 59734519284 37.66 0.89
6 EndoN_FFPE_L08_RNA_01_B23LG7FLT4_1 TGTTCGCTCT ACTTGCGTGT 2 1586359492 1450524286 60654719263 38.24 0.91
6 OvarianN_FFPE_L04_RNA_01_B23LG7FLT4_1 AGGTATTCGG AGATGTGCGC 1 18948276827 17387337222 723654611124 38.19 0.92
6 OvarianN_FFPE_L04_RNA_01_B23LG7FLT4_1 AGGTATTCGG AGATGTGCGC 2 18948276827 17551639813 728728902088 38.46 0.93
6 HeadNeckN_FFPE_L04_RNA_01_B23LG7FLT4_1 ACGGCCTACA TCTCACTCTA 1 2224784925 1933227096 82559538192 37.11 0.87
6 HeadNeckN_FFPE_L04_RNA_01_B23LG7FLT4_1 ACGGCCTACA TCTCACTCTA 2 2224784925 2019049995 84779011059 38.11 0.91
6 HeadNeckN_FFPE_L09_RNA_01_B23LG7FLT4_1 CACGTAAGAG TCAATCCGCG 1 5593212140 4988814231 210337258386 37.61 0.89
6 HeadNeckN_FFPE_L09_RNA_01_B23LG7FLT4_1 CACGTAAGAG TCAATCCGCG 2 5593212140 5134767934 214229813200 38.30 0.92
6 ColoN_FFPE_L03_RNA_01_B23LG7FLT4_1 AATCGAACTC ACGAACCTTA 1 722093325 537800398 24846064798 34.41 0.74
6 ColoN_FFPE_L03_RNA_01_B23LG7FLT4_1 AATCGAACTC ACGAACCTTA 2 722093325 615360077 26809764671 37.13 0.85
6 ColoN_FFPE_L08_RNA_01_B23LG7FLT4_1 AGGCTGGAGA CAACTGTCAT 1 4417728178 3888629539 164903602513 37.33 0.88
6 ColoN_FFPE_L08_RNA_01_B23LG7FLT4_1 AGGCTGGAGA CAACTGTCAT 2 4417728178 4082249546 169837826783 38.44 0.92
6 BreastNP_FFPE_L04_RNA_01_B23LG7FLT4_1 TAAGCCACGC TTACGAACGA 1 1462118806 1270106438 54320076938 37.15 0.87
6 BreastNP_FFPE_L04_RNA_01_B23LG7FLT4_1 TAAGCCACGC TTACGAACGA 2 1462118806 1330109430 55789977099 38.16 0.91
6 SkinN_FFPE_L08_RNA_01_B23LG7FLT4_1 TCAATCAGAG GACTCTGGTT 1 2816611003 2458276968 104678427672 37.16 0.87
6 SkinN_FFPE_L08_RNA_01_B23LG7FLT4_1 TCAATCAGAG GACTCTGGTT 2 2816611003 2576272754 107704704257 38.24 0.91
6 SkinN_FFPE_L04_RNA_01_B23LG7FLT4_1 AACATAAGGC GTTAGCTTAG 1 14015254354 12998001493 538493689627 38.42 0.93
6 SkinN_FFPE_L04_RNA_01_B23LG7FLT4_1 AACATAAGGC GTTAGCTTAG 2 14015254354 13040024499 540164494266 38.54 0.93
6 SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1 TTGCAATGCG CGAGACTTCA 1 18405665726 16417701786 692693427882 37.63 0.89
6 SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1 TTGCAATGCG CGAGACTTCA 2 18405665726 16792243754 702076958735 38.14 0.91
6 EndoN_FFPE_L01_RNA_01_B23LG7FLT4_1 AACCGGCCTT TGTTCAGATC 1 24158241907 22110943894 921065466370 38.13 0.92
6 EndoN_FFPE_L01_RNA_01_B23LG7FLT4_1 AACCGGCCTT TGTTCAGATC 2 24158241907 22511907326 932109043631 38.58 0.93
6 EndoN_FFPE_L04_RNA_01_B23LG7FLT4_1 CATTATCGCT CGAGTTGCTT 1 19494338882 17870987078 743751355034 38.15 0.92
6 EndoN_FFPE_L04_RNA_01_B23LG7FLT4_1 CATTATCGCT CGAGTTGCTT 2 19494338882 18138602139 751331547615 38.54 0.93
6 EndoN_FFPE_L05_RNA_01_B23LG7FLT4_1 CATTGAGCTA ACTTCACATC 1 1184049437 974759320 42697387759 36.06 0.82
6 EndoN_FFPE_L05_RNA_01_B23LG7FLT4_1 CATTGAGCTA ACTTCACATC 2 1184049437 1058331183 44850282825 37.88 0.89
6 EndoN_FFPE_L06_RNA_01_B23LG7FLT4_1 CTTCGGAATC CGTCGGTAAG 1 8275852470 7429237322 312273271823 37.73 0.90
6 EndoN_FFPE_L06_RNA_01_B23LG7FLT4_1 CTTCGGAATC CGTCGGTAAG 2 8275852470 7611115248 316903652439 38.29 0.92
6 EndoN_FFPE_L09_RNA_01_B23LG7FLT4_1 AACCACACTA CCTCTGCTGA 1 26341885825 24257065142 1007460662735 38.25 0.92
6 EndoN_FFPE_L09_RNA_01_B23LG7FLT4_1 AACCACACTA CCTCTGCTGA 2 26341885825 24694334514 1019364992640 38.70 0.94
6 OvarianNP_FFPE_L01_RNA_01_B23LG7FLT4_1 GTACAGCGGA CAATCTGTGT 1 632983695 493714850 22240261670 35.14 0.78
6 OvarianNP_FFPE_L01_RNA_01_B23LG7FLT4_1 GTACAGCGGA CAATCTGTGT 2 632983695 562883531 23951151092 37.84 0.89
6 OvarianNP_FFPE_L02_RNA_01_B23LG7FLT4_1 ACTTCAACAG GCGTGAGCAT 1 675416356 543744508 24124964647 35.72 0.81
6 OvarianNP_FFPE_L02_RNA_01_B23LG7FLT4_1 ACTTCAACAG GCGTGAGCAT 2 675416356 612228938 25756512665 38.13 0.91
6 OvarianNP_FFPE_L05_RNA_01_B23LG7FLT4_1 TGGACAATAG GAGTCCTGTG 1 1830267980 1555504694 67159271876 36.69 0.85
6 OvarianNP_FFPE_L05_RNA_01_B23LG7FLT4_1 TGGACAATAG GAGTCCTGTG 2 1830267980 1672395926 70010882801 38.25 0.91
6 HeadNeckN_FFPE_L01_RNA_01_B23LG7FLT4_1 TCACACGGAT CTTCTGATCG 1 5048163446 4598762333 192168566867 38.07 0.91
6 HeadNeckN_FFPE_L01_RNA_01_B23LG7FLT4_1 TCACACGGAT CTTCTGATCG 2 5048163446 4628348793 193166946222 38.26 0.92
6 HeadNeckN_FFPE_L02_RNA_01_B23LG7FLT4_1 AGGATACGGT AACCACGTCA 1 4074926166 3622517387 153131431082 37.58 0.89
6 HeadNeckN_FFPE_L02_RNA_01_B23LG7FLT4_1 AGGATACGGT AACCACGTCA 2 4074926166 3707728331 155394961847 38.13 0.91
6 HeadNeckN_FFPE_L05_RNA_01_B23LG7FLT4_1 GCTACAGGTC TTATGCAGGA 1 885815075 722270752 31848898933 35.95 0.82
6 HeadNeckN_FFPE_L05_RNA_01_B23LG7FLT4_1 GCTACAGGTC TTATGCAGGA 2 885815075 791164629 33531163284 37.85 0.89
6 HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1 GCCAAGTAAC TGCGTGATGA 1 2776386717 2476204895 104417381405 37.61 0.89
6 HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1 GCCAAGTAAC TGCGTGATGA 2 2776386717 2556351487 106464263362 38.35 0.92
6 OvarianND_FFPE_L01_RNA_01_B23LG7FLT4_1 TTGTGAAGGC TCGTCAGTAC 1 36083210811 33861427055 1395590359430 38.68 0.94
6 OvarianND_FFPE_L01_RNA_01_B23LG7FLT4_1 TTGTGAAGGC TCGTCAGTAC 2 36083210811 33978057599 1399329323414 38.78 0.94
6 OvarianND_FFPE_L02_RNA_01_B23LG7FLT4_1 GTCGACTCCT TGCCGTTAGC 1 31093966055 29139199515 1201485060222 38.64 0.94
6 OvarianND_FFPE_L02_RNA_01_B23LG7FLT4_1 GTCGACTCCT TGCCGTTAGC 2 31093966055 29183165667 1203656085885 38.71 0.94
6 OvarianND_FFPE_L03_RNA_01_B23LG7FLT4_1 CTGAGCTTGT CTTCTTGCGT 1 37505363088 35612545043 1460984341721 38.95 0.95
6 OvarianND_FFPE_L03_RNA_01_B23LG7FLT4_1 CTGAGCTTGT CTTCTTGCGT 2 37505363088 35491811933 1458541330616 38.89 0.95
6 FFPE_HD789_01_RNA_0004_B23LG7FLT4_1 CCTCTGTCAT CGTATCGATT 1 91154872905 87744370702 3576805900987 39.24 0.96
6 FFPE_HD789_01_RNA_0004_B23LG7FLT4_1 CCTCTGTCAT CGTATCGATT 2 91154872905 86479073478 3549152444016 38.94 0.95
6 FFPE_V4_0001_RNA_0001_B23LG7FLT4_2 GCAGATGTAA TACACGCCTC 1 72584334658 69153043364 2830046505929 38.99 0.95
6 FFPE_V4_0001_RNA_0001_B23LG7FLT4_2 GCAGATGTAA TACACGCCTC 2 72584334658 68771215324 2824498360891 38.91 0.95
6 NTC_0001_0001_B23LG7FLT4_2 CTCATCATCT TAAGCCTCTA 1 44411969 30777463 1482695581 33.39 0.69
6 NTC_0001_0001_B23LG7FLT4_2 CTCATCATCT TAAGCCTCTA 2 44411969 37445581 1649576803 37.14 0.84
6 Undetermined 1 40058705440 31403905559 1406531810477 35.11 0.78
6 Undetermined 2 40058705440 30312556092 1365841552329 34.10 0.76
99 rows