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Filename
Adapter_Metrics.csv
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0008_exp0011/B23LG7FLT4/nfcore_rnafusion__e7be3c7a--20260528-111100/bclconvert/L006/Reports/Adapter_Metrics.csv
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7.8 KB
Workflow Run
dev_rna_exp0008_exp0011-e7be3c7a_b
Published
May 28, 2026 11:54 AM

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Lane Sample_ID index index2 ReadNumber AdapterBases SampleBases % Adapter Bases
6 LungN_FFPE_L01_RNA_01_B23LG7FLT4_1 CAACCATACA ACCGGTTATA 1 0 31480486191 0.000
6 LungN_FFPE_L01_RNA_01_B23LG7FLT4_1 CAACCATACA ACCGGTTATA 2 0 31480486191 0.000
6 LungN_FFPE_L02_RNA_01_B23LG7FLT4_1 GTAGGCCGTT GCCACTGTCT 1 0 6948774172 0.000
6 LungN_FFPE_L02_RNA_01_B23LG7FLT4_1 GTAGGCCGTT GCCACTGTCT 2 0 6948774172 0.000
6 LungN_FFPE_L03_RNA_01_B23LG7FLT4_1 CGGATTGATC AGTCACAACA 1 0 23508342890 0.000
6 LungN_FFPE_L03_RNA_01_B23LG7FLT4_1 CGGATTGATC AGTCACAACA 2 0 23508342890 0.000
6 BreastNB_FFPE_L01_RNA_01_B23LG7FLT4_1 ACTGGCAAGA TGTTGTCCAT 1 0 2011472057 0.000
6 BreastNB_FFPE_L01_RNA_01_B23LG7FLT4_1 ACTGGCAAGA TGTTGTCCAT 2 0 2011472057 0.000
6 BreastNB_FFPE_L02_RNA_01_B23LG7FLT4_1 ACAAGAACCT CGATACTGAA 1 0 2133268657 0.000
6 BreastNB_FFPE_L02_RNA_01_B23LG7FLT4_1 ACAAGAACCT CGATACTGAA 2 0 2133268657 0.000
6 BreastNB_FFPE_L03_RNA_01_B23LG7FLT4_1 AGAGTATGTG AGATGGCTTC 1 0 3089901373 0.000
6 BreastNB_FFPE_L03_RNA_01_B23LG7FLT4_1 AGAGTATGTG AGATGGCTTC 2 0 3089901373 0.000
6 ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2 ACTTAGATCG CGGAATTCTT 1 0 10307218022 0.000
6 ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2 ACTTAGATCG CGGAATTCTT 2 0 10307218022 0.000
6 ColoN_FFPE_L06_RNA_01_B23LG7FLT4_2 GATCAACAAG AAGCACTGTC 1 0 5014365418 0.000
6 ColoN_FFPE_L06_RNA_01_B23LG7FLT4_2 GATCAACAAG AAGCACTGTC 2 0 5014365418 0.000
6 BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2 ACCTTCGGAC GACCGTAGAT 1 0 630713712 0.000
6 BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2 ACCTTCGGAC GACCGTAGAT 2 0 630713712 0.000
6 SkinN_FFPE_L01_RNA_01_B23LG7FLT4_2 TATCATGTCG TAATCTGCAC 1 0 4345875583 0.000
6 SkinN_FFPE_L01_RNA_01_B23LG7FLT4_2 TATCATGTCG TAATCTGCAC 2 0 4345875583 0.000
6 EndoN_FFPE_L02_RNA_01_B23LG7FLT4_2 CGTCTAGTAA TTAATCCAGC 1 0 3345405604 0.000
6 EndoN_FFPE_L02_RNA_01_B23LG7FLT4_2 CGTCTAGTAA TTAATCCAGC 2 0 3345405604 0.000
6 OvarianN_FFPE_L03_RNA_01_B23LG7FLT4_2 TCTTAGGTGG GATCACTGGT 1 0 7378944029 0.000
6 OvarianN_FFPE_L03_RNA_01_B23LG7FLT4_2 TCTTAGGTGG GATCACTGGT 2 0 7378944029 0.000
6 HeadNeckN_FFPE_L03_RNA_01_B23LG7FLT4_1 TCGACGTTGG GATAAGTGTG 1 0 2789520999 0.000
6 HeadNeckN_FFPE_L03_RNA_01_B23LG7FLT4_1 TCGACGTTGG GATAAGTGTG 2 0 2789520999 0.000
6 HeadNeckN_FFPE_L08_RNA_01_B23LG7FLT4_1 AAGAGTACGA GCAAGGACGT 1 0 21295719656 0.000
6 HeadNeckN_FFPE_L08_RNA_01_B23LG7FLT4_1 AAGAGTACGA GCAAGGACGT 2 0 21295719656 0.000
6 ColoN_FFPE_L02_RNA_01_B23LG7FLT4_1 CACGAGAAGT GTCTGCGTAG 1 0 1516679183 0.000
6 ColoN_FFPE_L02_RNA_01_B23LG7FLT4_1 CACGAGAAGT GTCTGCGTAG 2 0 1516679183 0.000
6 ColoN_FFPE_L07_RNA_01_B23LG7FLT4_1 GACAATTAGC CCGGTCATGA 1 0 1769988025 0.000
6 ColoN_FFPE_L07_RNA_01_B23LG7FLT4_1 GACAATTAGC CCGGTCATGA 2 0 1769988025 0.000
6 BreastNP_FFPE_L03_RNA_01_B23LG7FLT4_1 TTCTACCGGC TACTCGTAAG 1 0 1587553902 0.000
6 BreastNP_FFPE_L03_RNA_01_B23LG7FLT4_1 TTCTACCGGC TACTCGTAAG 2 0 1587553902 0.000
6 SkinN_FFPE_L02_RNA_01_B23LG7FLT4_1 GTGAGAGTAT ATCTGTGAGG 1 0 3132107383 0.000
6 SkinN_FFPE_L02_RNA_01_B23LG7FLT4_1 GTGAGAGTAT ATCTGTGAGG 2 0 3132107383 0.000
6 SkinN_FFPE_L07_RNA_01_B23LG7FLT4_1 CTGGAGAATA TCCATACAAC 1 0 8386859818 0.000
6 SkinN_FFPE_L07_RNA_01_B23LG7FLT4_1 CTGGAGAATA TCCATACAAC 2 0 8386859818 0.000
6 EndoN_FFPE_L03_RNA_01_B23LG7FLT4_1 TGACAAGAGG AATCTGTTGG 1 0 4274701582 0.000
6 EndoN_FFPE_L03_RNA_01_B23LG7FLT4_1 TGACAAGAGG AATCTGTTGG 2 0 4274701582 0.000
6 EndoN_FFPE_L08_RNA_01_B23LG7FLT4_1 TGTTCGCTCT ACTTGCGTGT 1 0 1586359492 0.000
6 EndoN_FFPE_L08_RNA_01_B23LG7FLT4_1 TGTTCGCTCT ACTTGCGTGT 2 0 1586359492 0.000
6 OvarianN_FFPE_L04_RNA_01_B23LG7FLT4_1 AGGTATTCGG AGATGTGCGC 1 0 18948276827 0.000
6 OvarianN_FFPE_L04_RNA_01_B23LG7FLT4_1 AGGTATTCGG AGATGTGCGC 2 0 18948276827 0.000
6 HeadNeckN_FFPE_L04_RNA_01_B23LG7FLT4_1 ACGGCCTACA TCTCACTCTA 1 0 2224784925 0.000
6 HeadNeckN_FFPE_L04_RNA_01_B23LG7FLT4_1 ACGGCCTACA TCTCACTCTA 2 0 2224784925 0.000
6 HeadNeckN_FFPE_L09_RNA_01_B23LG7FLT4_1 CACGTAAGAG TCAATCCGCG 1 0 5593212140 0.000
6 HeadNeckN_FFPE_L09_RNA_01_B23LG7FLT4_1 CACGTAAGAG TCAATCCGCG 2 0 5593212140 0.000
6 ColoN_FFPE_L03_RNA_01_B23LG7FLT4_1 AATCGAACTC ACGAACCTTA 1 0 722093325 0.000
6 ColoN_FFPE_L03_RNA_01_B23LG7FLT4_1 AATCGAACTC ACGAACCTTA 2 0 722093325 0.000
6 ColoN_FFPE_L08_RNA_01_B23LG7FLT4_1 AGGCTGGAGA CAACTGTCAT 1 0 4417728178 0.000
6 ColoN_FFPE_L08_RNA_01_B23LG7FLT4_1 AGGCTGGAGA CAACTGTCAT 2 0 4417728178 0.000
6 BreastNP_FFPE_L04_RNA_01_B23LG7FLT4_1 TAAGCCACGC TTACGAACGA 1 0 1462118806 0.000
6 BreastNP_FFPE_L04_RNA_01_B23LG7FLT4_1 TAAGCCACGC TTACGAACGA 2 0 1462118806 0.000
6 SkinN_FFPE_L08_RNA_01_B23LG7FLT4_1 TCAATCAGAG GACTCTGGTT 1 0 2816611003 0.000
6 SkinN_FFPE_L08_RNA_01_B23LG7FLT4_1 TCAATCAGAG GACTCTGGTT 2 0 2816611003 0.000
6 SkinN_FFPE_L04_RNA_01_B23LG7FLT4_1 AACATAAGGC GTTAGCTTAG 1 0 14015254354 0.000
6 SkinN_FFPE_L04_RNA_01_B23LG7FLT4_1 AACATAAGGC GTTAGCTTAG 2 0 14015254354 0.000
6 SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1 TTGCAATGCG CGAGACTTCA 1 0 18405665726 0.000
6 SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1 TTGCAATGCG CGAGACTTCA 2 0 18405665726 0.000
6 EndoN_FFPE_L01_RNA_01_B23LG7FLT4_1 AACCGGCCTT TGTTCAGATC 1 0 24158241907 0.000
6 EndoN_FFPE_L01_RNA_01_B23LG7FLT4_1 AACCGGCCTT TGTTCAGATC 2 0 24158241907 0.000
6 EndoN_FFPE_L04_RNA_01_B23LG7FLT4_1 CATTATCGCT CGAGTTGCTT 1 0 19494338882 0.000
6 EndoN_FFPE_L04_RNA_01_B23LG7FLT4_1 CATTATCGCT CGAGTTGCTT 2 0 19494338882 0.000
6 EndoN_FFPE_L05_RNA_01_B23LG7FLT4_1 CATTGAGCTA ACTTCACATC 1 0 1184049437 0.000
6 EndoN_FFPE_L05_RNA_01_B23LG7FLT4_1 CATTGAGCTA ACTTCACATC 2 0 1184049437 0.000
6 EndoN_FFPE_L06_RNA_01_B23LG7FLT4_1 CTTCGGAATC CGTCGGTAAG 1 0 8275852470 0.000
6 EndoN_FFPE_L06_RNA_01_B23LG7FLT4_1 CTTCGGAATC CGTCGGTAAG 2 0 8275852470 0.000
6 EndoN_FFPE_L09_RNA_01_B23LG7FLT4_1 AACCACACTA CCTCTGCTGA 1 0 26341885825 0.000
6 EndoN_FFPE_L09_RNA_01_B23LG7FLT4_1 AACCACACTA CCTCTGCTGA 2 0 26341885825 0.000
6 OvarianNP_FFPE_L01_RNA_01_B23LG7FLT4_1 GTACAGCGGA CAATCTGTGT 1 0 632983695 0.000
6 OvarianNP_FFPE_L01_RNA_01_B23LG7FLT4_1 GTACAGCGGA CAATCTGTGT 2 0 632983695 0.000
6 OvarianNP_FFPE_L02_RNA_01_B23LG7FLT4_1 ACTTCAACAG GCGTGAGCAT 1 0 675416356 0.000
6 OvarianNP_FFPE_L02_RNA_01_B23LG7FLT4_1 ACTTCAACAG GCGTGAGCAT 2 0 675416356 0.000
6 OvarianNP_FFPE_L05_RNA_01_B23LG7FLT4_1 TGGACAATAG GAGTCCTGTG 1 0 1830267980 0.000
6 OvarianNP_FFPE_L05_RNA_01_B23LG7FLT4_1 TGGACAATAG GAGTCCTGTG 2 0 1830267980 0.000
6 HeadNeckN_FFPE_L01_RNA_01_B23LG7FLT4_1 TCACACGGAT CTTCTGATCG 1 0 5048163446 0.000
6 HeadNeckN_FFPE_L01_RNA_01_B23LG7FLT4_1 TCACACGGAT CTTCTGATCG 2 0 5048163446 0.000
6 HeadNeckN_FFPE_L02_RNA_01_B23LG7FLT4_1 AGGATACGGT AACCACGTCA 1 0 4074926166 0.000
6 HeadNeckN_FFPE_L02_RNA_01_B23LG7FLT4_1 AGGATACGGT AACCACGTCA 2 0 4074926166 0.000
6 HeadNeckN_FFPE_L05_RNA_01_B23LG7FLT4_1 GCTACAGGTC TTATGCAGGA 1 0 885815075 0.000
6 HeadNeckN_FFPE_L05_RNA_01_B23LG7FLT4_1 GCTACAGGTC TTATGCAGGA 2 0 885815075 0.000
6 HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1 GCCAAGTAAC TGCGTGATGA 1 0 2776386717 0.000
6 HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1 GCCAAGTAAC TGCGTGATGA 2 0 2776386717 0.000
6 OvarianND_FFPE_L01_RNA_01_B23LG7FLT4_1 TTGTGAAGGC TCGTCAGTAC 1 0 36083210811 0.000
6 OvarianND_FFPE_L01_RNA_01_B23LG7FLT4_1 TTGTGAAGGC TCGTCAGTAC 2 0 36083210811 0.000
6 OvarianND_FFPE_L02_RNA_01_B23LG7FLT4_1 GTCGACTCCT TGCCGTTAGC 1 0 31093966055 0.000
6 OvarianND_FFPE_L02_RNA_01_B23LG7FLT4_1 GTCGACTCCT TGCCGTTAGC 2 0 31093966055 0.000
6 OvarianND_FFPE_L03_RNA_01_B23LG7FLT4_1 CTGAGCTTGT CTTCTTGCGT 1 0 37505363088 0.000
6 OvarianND_FFPE_L03_RNA_01_B23LG7FLT4_1 CTGAGCTTGT CTTCTTGCGT 2 0 37505363088 0.000
6 FFPE_HD789_01_RNA_0004_B23LG7FLT4_1 CCTCTGTCAT CGTATCGATT 1 0 91154872905 0.000
6 FFPE_HD789_01_RNA_0004_B23LG7FLT4_1 CCTCTGTCAT CGTATCGATT 2 0 91154872905 0.000
6 FFPE_V4_0001_RNA_0001_B23LG7FLT4_2 GCAGATGTAA TACACGCCTC 1 0 72584334658 0.000
6 FFPE_V4_0001_RNA_0001_B23LG7FLT4_2 GCAGATGTAA TACACGCCTC 2 0 72584334658 0.000
6 NTC_0001_0001_B23LG7FLT4_2 CTCATCATCT TAAGCCTCTA 1 0 44411969 0.000
6 NTC_0001_0001_B23LG7FLT4_2 CTCATCATCT TAAGCCTCTA 2 0 44411969 0.000
6 Undetermined 1 0 40058705440 0.000
6 Undetermined 2 0 40058705440 0.000
99 rows