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Quality_Metrics.csv
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s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0008_exp0011/B23LG7FLT4/nfcore_rnafusion__e7be3c7a--20260528-111100/bclconvert/L007/Reports/Quality_Metrics.csv
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dev_rna_exp0008_exp0011-e7be3c7a_b
Published
May 28, 2026 11:54 AM

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Lane SampleID index index2 ReadNumber Yield YieldQ30 QualityScoreSum Mean Quality Score (PF) % Q30
7 LungN_FFPE_L01_RNA_01_B23LG7FLT4_1 CAACCATACA ACCGGTTATA 1 31267223153 28947557899 1199895712807 38.38 0.93
7 LungN_FFPE_L01_RNA_01_B23LG7FLT4_1 CAACCATACA ACCGGTTATA 2 31267223153 28996191949 1203053241604 38.48 0.93
7 LungN_FFPE_L02_RNA_01_B23LG7FLT4_1 GTAGGCCGTT GCCACTGTCT 1 6919987381 6225887939 261538953053 37.79 0.90
7 LungN_FFPE_L02_RNA_01_B23LG7FLT4_1 GTAGGCCGTT GCCACTGTCT 2 6919987381 6374673620 265394918480 38.35 0.92
7 LungN_FFPE_L03_RNA_01_B23LG7FLT4_1 CGGATTGATC AGTCACAACA 1 23373818500 21738264870 899442061758 38.48 0.93
7 LungN_FFPE_L03_RNA_01_B23LG7FLT4_1 CGGATTGATC AGTCACAACA 2 23373818500 21744291946 900516150742 38.53 0.93
7 BreastNB_FFPE_L01_RNA_01_B23LG7FLT4_1 ACTGGCAAGA TGTTGTCCAT 1 2002103564 1710926137 73611742357 36.77 0.85
7 BreastNB_FFPE_L01_RNA_01_B23LG7FLT4_1 ACTGGCAAGA TGTTGTCCAT 2 2002103564 1812542667 76213545987 38.07 0.91
7 BreastNB_FFPE_L02_RNA_01_B23LG7FLT4_1 ACAAGAACCT CGATACTGAA 1 2131488367 1848951892 78999591886 37.06 0.87
7 BreastNB_FFPE_L02_RNA_01_B23LG7FLT4_1 ACAAGAACCT CGATACTGAA 2 2131488367 1914815146 80734988422 37.88 0.90
7 BreastNB_FFPE_L03_RNA_01_B23LG7FLT4_1 AGAGTATGTG AGATGGCTTC 1 3087016065 2697493730 114804112643 37.19 0.87
7 BreastNB_FFPE_L03_RNA_01_B23LG7FLT4_1 AGAGTATGTG AGATGGCTTC 2 3087016065 2843041760 118464592106 38.38 0.92
7 ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2 ACTTAGATCG CGGAATTCTT 1 10305893450 9284752399 389669958280 37.81 0.90
7 ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2 ACTTAGATCG CGGAATTCTT 2 10305893450 9418685338 393503342098 38.18 0.91
7 ColoN_FFPE_L06_RNA_01_B23LG7FLT4_2 GATCAACAAG AAGCACTGTC 1 5011114690 4405167930 187011510270 37.32 0.88
7 ColoN_FFPE_L06_RNA_01_B23LG7FLT4_2 GATCAACAAG AAGCACTGTC 2 5011114690 4515334855 190068750778 37.93 0.90
7 BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2 ACCTTCGGAC GACCGTAGAT 1 629417981 530318551 23054091286 36.63 0.84
7 BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2 ACCTTCGGAC GACCGTAGAT 2 629417981 558134533 23776051177 37.77 0.89
7 SkinN_FFPE_L01_RNA_01_B23LG7FLT4_2 TATCATGTCG TAATCTGCAC 1 4352323283 3860766322 163164581677 37.49 0.89
7 SkinN_FFPE_L01_RNA_01_B23LG7FLT4_2 TATCATGTCG TAATCTGCAC 2 4352323283 3982808371 166384959586 38.23 0.92
7 EndoN_FFPE_L02_RNA_01_B23LG7FLT4_2 CGTCTAGTAA TTAATCCAGC 1 3354921775 2877674252 123482695286 36.81 0.86
7 EndoN_FFPE_L02_RNA_01_B23LG7FLT4_2 CGTCTAGTAA TTAATCCAGC 2 3354921775 3051187563 127912526400 38.13 0.91
7 OvarianN_FFPE_L03_RNA_01_B23LG7FLT4_2 TCTTAGGTGG GATCACTGGT 1 7395009523 6331588161 272177225304 36.81 0.86
7 OvarianN_FFPE_L03_RNA_01_B23LG7FLT4_2 TCTTAGGTGG GATCACTGGT 2 7395009523 6556582133 277911515096 37.58 0.89
7 HeadNeckN_FFPE_L03_RNA_01_B23LG7FLT4_1 TCGACGTTGG GATAAGTGTG 1 2789603898 2442380702 103834544312 37.22 0.88
7 HeadNeckN_FFPE_L03_RNA_01_B23LG7FLT4_1 TCGACGTTGG GATAAGTGTG 2 2789603898 2509419746 105626081729 37.86 0.90
7 HeadNeckN_FFPE_L08_RNA_01_B23LG7FLT4_1 AAGAGTACGA GCAAGGACGT 1 21213361991 19608894869 813218833187 38.34 0.92
7 HeadNeckN_FFPE_L08_RNA_01_B23LG7FLT4_1 AAGAGTACGA GCAAGGACGT 2 21213361991 19784071656 818567614827 38.59 0.93
7 ColoN_FFPE_L02_RNA_01_B23LG7FLT4_1 CACGAGAAGT GTCTGCGTAG 1 1517741015 1268550818 55272091739 36.42 0.84
7 ColoN_FFPE_L02_RNA_01_B23LG7FLT4_1 CACGAGAAGT GTCTGCGTAG 2 1517741015 1367517198 57645556383 37.98 0.90
7 ColoN_FFPE_L07_RNA_01_B23LG7FLT4_1 GACAATTAGC CCGGTCATGA 1 1774168611 1439543173 63498286717 35.79 0.81
7 ColoN_FFPE_L07_RNA_01_B23LG7FLT4_1 GACAATTAGC CCGGTCATGA 2 1774168611 1606615638 67593600096 38.10 0.91
7 BreastNP_FFPE_L03_RNA_01_B23LG7FLT4_1 TTCTACCGGC TACTCGTAAG 1 1591152836 1337844694 58080331582 36.50 0.84
7 BreastNP_FFPE_L03_RNA_01_B23LG7FLT4_1 TTCTACCGGC TACTCGTAAG 2 1591152836 1437105480 60516351993 38.03 0.90
7 SkinN_FFPE_L02_RNA_01_B23LG7FLT4_1 GTGAGAGTAT ATCTGTGAGG 1 3148784729 2903391599 120774985142 38.36 0.92
7 SkinN_FFPE_L02_RNA_01_B23LG7FLT4_1 GTGAGAGTAT ATCTGTGAGG 2 3148784729 2892056169 120698714193 38.33 0.92
7 SkinN_FFPE_L07_RNA_01_B23LG7FLT4_1 CTGGAGAATA TCCATACAAC 1 8371530751 7567959837 317113738485 37.88 0.90
7 SkinN_FFPE_L07_RNA_01_B23LG7FLT4_1 CTGGAGAATA TCCATACAAC 2 8371530751 7767880432 322426501117 38.51 0.93
7 EndoN_FFPE_L03_RNA_01_B23LG7FLT4_1 TGACAAGAGG AATCTGTTGG 1 4266715796 3775450489 159696170638 37.43 0.88
7 EndoN_FFPE_L03_RNA_01_B23LG7FLT4_1 TGACAAGAGG AATCTGTTGG 2 4266715796 3926907850 163612572529 38.35 0.92
7 EndoN_FFPE_L08_RNA_01_B23LG7FLT4_1 TGTTCGCTCT ACTTGCGTGT 1 1589263071 1411669397 59705171468 37.57 0.89
7 EndoN_FFPE_L08_RNA_01_B23LG7FLT4_1 TGTTCGCTCT ACTTGCGTGT 2 1589263071 1449843257 60686313089 38.19 0.91
7 OvarianN_FFPE_L04_RNA_01_B23LG7FLT4_1 AGGTATTCGG AGATGTGCGC 1 18977143346 17410898617 724831896670 38.19 0.92
7 OvarianN_FFPE_L04_RNA_01_B23LG7FLT4_1 AGGTATTCGG AGATGTGCGC 2 18977143346 17541084515 728992596416 38.41 0.92
7 HeadNeckN_FFPE_L04_RNA_01_B23LG7FLT4_1 ACGGCCTACA TCTCACTCTA 1 2214449428 1924804064 82210092704 37.12 0.87
7 HeadNeckN_FFPE_L04_RNA_01_B23LG7FLT4_1 ACGGCCTACA TCTCACTCTA 2 2214449428 2006799260 84307710971 38.07 0.91
7 HeadNeckN_FFPE_L09_RNA_01_B23LG7FLT4_1 CACGTAAGAG TCAATCCGCG 1 5594454719 4985852348 210300584885 37.59 0.89
7 HeadNeckN_FFPE_L09_RNA_01_B23LG7FLT4_1 CACGTAAGAG TCAATCCGCG 2 5594454719 5124395312 214003528622 38.25 0.92
7 ColoN_FFPE_L03_RNA_01_B23LG7FLT4_1 AATCGAACTC ACGAACCTTA 1 722641606 535471825 24800185000 34.32 0.74
7 ColoN_FFPE_L03_RNA_01_B23LG7FLT4_1 AATCGAACTC ACGAACCTTA 2 722641606 618350308 26866799476 37.18 0.86
7 ColoN_FFPE_L08_RNA_01_B23LG7FLT4_1 AGGCTGGAGA CAACTGTCAT 1 4401392243 3871036624 164227726318 37.31 0.88
7 ColoN_FFPE_L08_RNA_01_B23LG7FLT4_1 AGGCTGGAGA CAACTGTCAT 2 4401392243 4058915410 169009863601 38.40 0.92
7 BreastNP_FFPE_L04_RNA_01_B23LG7FLT4_1 TAAGCCACGC TTACGAACGA 1 1458029273 1260222287 54011123180 37.04 0.86
7 BreastNP_FFPE_L04_RNA_01_B23LG7FLT4_1 TAAGCCACGC TTACGAACGA 2 1458029273 1324177440 55575517824 38.12 0.91
7 SkinN_FFPE_L08_RNA_01_B23LG7FLT4_1 TCAATCAGAG GACTCTGGTT 1 2818700692 2458170691 104731069732 37.16 0.87
7 SkinN_FFPE_L08_RNA_01_B23LG7FLT4_1 TCAATCAGAG GACTCTGGTT 2 2818700692 2572848323 107656648721 38.19 0.91
7 SkinN_FFPE_L04_RNA_01_B23LG7FLT4_1 AACATAAGGC GTTAGCTTAG 1 13961762755 12926645589 535871009400 38.38 0.93
7 SkinN_FFPE_L04_RNA_01_B23LG7FLT4_1 AACATAAGGC GTTAGCTTAG 2 13961762755 12960667677 537424093449 38.49 0.93
7 SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1 TTGCAATGCG CGAGACTTCA 1 18375577315 16395935145 691829346609 37.65 0.89
7 SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1 TTGCAATGCG CGAGACTTCA 2 18375577315 16719647304 699885872322 38.09 0.91
7 EndoN_FFPE_L01_RNA_01_B23LG7FLT4_1 AACCGGCCTT TGTTCAGATC 1 24194993344 22121532965 921887829935 38.10 0.91
7 EndoN_FFPE_L01_RNA_01_B23LG7FLT4_1 AACCGGCCTT TGTTCAGATC 2 24194993344 22497126070 932420588893 38.54 0.93
7 EndoN_FFPE_L04_RNA_01_B23LG7FLT4_1 CATTATCGCT CGAGTTGCTT 1 19440590734 17802855411 741218410260 38.13 0.92
7 EndoN_FFPE_L04_RNA_01_B23LG7FLT4_1 CATTATCGCT CGAGTTGCTT 2 19440590734 18049186126 748372534909 38.50 0.93
7 EndoN_FFPE_L05_RNA_01_B23LG7FLT4_1 CATTGAGCTA ACTTCACATC 1 1187047089 976099304 42787706549 36.05 0.82
7 EndoN_FFPE_L05_RNA_01_B23LG7FLT4_1 CATTGAGCTA ACTTCACATC 2 1187047089 1059832503 44924443668 37.85 0.89
7 EndoN_FFPE_L06_RNA_01_B23LG7FLT4_1 CTTCGGAATC CGTCGGTAAG 1 8267238071 7412456547 311717372610 37.71 0.90
7 EndoN_FFPE_L06_RNA_01_B23LG7FLT4_1 CTTCGGAATC CGTCGGTAAG 2 8267238071 7585913217 316177157301 38.24 0.92
7 EndoN_FFPE_L09_RNA_01_B23LG7FLT4_1 AACCACACTA CCTCTGCTGA 1 26286049800 24196725539 1005223121339 38.24 0.92
7 EndoN_FFPE_L09_RNA_01_B23LG7FLT4_1 AACCACACTA CCTCTGCTGA 2 26286049800 24592315211 1016077675571 38.65 0.94
7 OvarianNP_FFPE_L01_RNA_01_B23LG7FLT4_1 GTACAGCGGA CAATCTGTGT 1 632340737 492986495 22222650554 35.14 0.78
7 OvarianNP_FFPE_L01_RNA_01_B23LG7FLT4_1 GTACAGCGGA CAATCTGTGT 2 632340737 562561764 23922631794 37.83 0.89
7 OvarianNP_FFPE_L02_RNA_01_B23LG7FLT4_1 ACTTCAACAG GCGTGAGCAT 1 676297290 542627992 24113849308 35.66 0.80
7 OvarianNP_FFPE_L02_RNA_01_B23LG7FLT4_1 ACTTCAACAG GCGTGAGCAT 2 676297290 612617252 25774997915 38.11 0.91
7 OvarianNP_FFPE_L05_RNA_01_B23LG7FLT4_1 TGGACAATAG GAGTCCTGTG 1 1834474689 1554985255 67213372726 36.64 0.85
7 OvarianNP_FFPE_L05_RNA_01_B23LG7FLT4_1 TGGACAATAG GAGTCCTGTG 2 1834474689 1673115062 70090771181 38.21 0.91
7 HeadNeckN_FFPE_L01_RNA_01_B23LG7FLT4_1 TCACACGGAT CTTCTGATCG 1 5047624527 4587378360 191882264643 38.01 0.91
7 HeadNeckN_FFPE_L01_RNA_01_B23LG7FLT4_1 TCACACGGAT CTTCTGATCG 2 5047624527 4621216794 192984162333 38.23 0.92
7 HeadNeckN_FFPE_L02_RNA_01_B23LG7FLT4_1 AGGATACGGT AACCACGTCA 1 4068773218 3604881081 152594753823 37.50 0.89
7 HeadNeckN_FFPE_L02_RNA_01_B23LG7FLT4_1 AGGATACGGT AACCACGTCA 2 4068773218 3697533168 155043924759 38.11 0.91
7 HeadNeckN_FFPE_L05_RNA_01_B23LG7FLT4_1 GCTACAGGTC TTATGCAGGA 1 884604508 718332060 31734555027 35.87 0.81
7 HeadNeckN_FFPE_L05_RNA_01_B23LG7FLT4_1 GCTACAGGTC TTATGCAGGA 2 884604508 789370091 33458894579 37.82 0.89
7 HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1 GCCAAGTAAC TGCGTGATGA 1 2761926202 2458944936 103753084440 37.57 0.89
7 HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1 GCCAAGTAAC TGCGTGATGA 2 2761926202 2536732721 105761746991 38.29 0.92
7 OvarianND_FFPE_L01_RNA_01_B23LG7FLT4_1 TTGTGAAGGC TCGTCAGTAC 1 36013462854 33750953186 1391696999789 38.64 0.94
7 OvarianND_FFPE_L01_RNA_01_B23LG7FLT4_1 TTGTGAAGGC TCGTCAGTAC 2 36013462854 33857280710 1395389029784 38.75 0.94
7 OvarianND_FFPE_L02_RNA_01_B23LG7FLT4_1 GTCGACTCCT TGCCGTTAGC 1 31178855537 29183506058 1203852019895 38.61 0.94
7 OvarianND_FFPE_L02_RNA_01_B23LG7FLT4_1 GTCGACTCCT TGCCGTTAGC 2 31178855537 29213659291 1205854444654 38.68 0.94
7 OvarianND_FFPE_L03_RNA_01_B23LG7FLT4_1 CTGAGCTTGT CTTCTTGCGT 1 37515932484 35551674050 1459721666570 38.91 0.95
7 OvarianND_FFPE_L03_RNA_01_B23LG7FLT4_1 CTGAGCTTGT CTTCTTGCGT 2 37515932484 35444147502 1457676159288 38.85 0.94
7 FFPE_HD789_01_RNA_0004_B23LG7FLT4_1 CCTCTGTCAT CGTATCGATT 1 91088947513 87582711748 3571905763261 39.21 0.96
7 FFPE_HD789_01_RNA_0004_B23LG7FLT4_1 CCTCTGTCAT CGTATCGATT 2 91088947513 86309961314 3544237272314 38.91 0.95
7 FFPE_V4_0001_RNA_0001_B23LG7FLT4_2 GCAGATGTAA TACACGCCTC 1 72683690695 69209707900 2833137538282 38.98 0.95
7 FFPE_V4_0001_RNA_0001_B23LG7FLT4_2 GCAGATGTAA TACACGCCTC 2 72683690695 68776862666 2826403543181 38.89 0.95
7 NTC_0001_0001_B23LG7FLT4_2 CTCATCATCT TAAGCCTCTA 1 44464668 30397311 1474324527 33.16 0.68
7 NTC_0001_0001_B23LG7FLT4_2 CTCATCATCT TAAGCCTCTA 2 44464668 37871178 1657811538 37.28 0.85
7 Undetermined 1 42095312655 33204056459 1482316345739 35.21 0.79
7 Undetermined 2 42095312655 31913620437 1436760841809 34.13 0.76
99 rows