File Info

Filename
Demultiplex_Stats.csv
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0008_exp0011/B23LG7FLT4/nfcore_rnafusion__e7be3c7a--20260528-111100/bclconvert/L006/Reports/Demultiplex_Stats.csv
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5.7 KB
Workflow Run
dev_rna_exp0008_exp0011-e7be3c7a_b
Published
May 28, 2026 11:54 AM

Content

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Lane SampleID Index # Reads # Perfect Index Reads # One Mismatch Index Reads # Two Mismatch Index Reads % Reads % Perfect Index Reads % One Mismatch Index Reads % Two Mismatch Index Reads
6 LungN_FFPE_L01_RNA_01_B23LG7FLT4_1 CAACCATACA-ACCGGTTATA 208480041 203058560 5421481 0 0.0509 0.9740 0.0260 0.0000
6 LungN_FFPE_L02_RNA_01_B23LG7FLT4_1 GTAGGCCGTT-GCCACTGTCT 46018372 45058878 959494 0 0.0112 0.9791 0.0209 0.0000
6 LungN_FFPE_L03_RNA_01_B23LG7FLT4_1 CGGATTGATC-AGTCACAACA 155684390 152579212 3105178 0 0.0380 0.9801 0.0199 0.0000
6 BreastNB_FFPE_L01_RNA_01_B23LG7FLT4_1 ACTGGCAAGA-TGTTGTCCAT 13321007 13111906 209101 0 0.0032 0.9843 0.0157 0.0000
6 BreastNB_FFPE_L02_RNA_01_B23LG7FLT4_1 ACAAGAACCT-CGATACTGAA 14127607 13826458 301149 0 0.0034 0.9787 0.0213 0.0000
6 BreastNB_FFPE_L03_RNA_01_B23LG7FLT4_1 AGAGTATGTG-AGATGGCTTC 20462923 20087905 375018 0 0.0050 0.9817 0.0183 0.0000
6 ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2 ACTTAGATCG-CGGAATTCTT 68259722 65535953 2723769 0 0.0167 0.9601 0.0399 0.0000
6 ColoN_FFPE_L06_RNA_01_B23LG7FLT4_2 GATCAACAAG-AAGCACTGTC 33207718 32541739 665979 0 0.0081 0.9799 0.0201 0.0000
6 BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2 ACCTTCGGAC-GACCGTAGAT 4176912 4099450 77462 0 0.0010 0.9815 0.0185 0.0000
6 SkinN_FFPE_L01_RNA_01_B23LG7FLT4_2 TATCATGTCG-TAATCTGCAC 28780633 28305151 475482 0 0.0070 0.9835 0.0165 0.0000
6 EndoN_FFPE_L02_RNA_01_B23LG7FLT4_2 CGTCTAGTAA-TTAATCCAGC 22155004 21814213 340791 0 0.0054 0.9846 0.0154 0.0000
6 OvarianN_FFPE_L03_RNA_01_B23LG7FLT4_2 TCTTAGGTGG-GATCACTGGT 48867179 48101904 765275 0 0.0119 0.9843 0.0157 0.0000
6 HeadNeckN_FFPE_L03_RNA_01_B23LG7FLT4_1 TCGACGTTGG-GATAAGTGTG 18473649 17672572 801077 0 0.0045 0.9566 0.0434 0.0000
6 HeadNeckN_FFPE_L08_RNA_01_B23LG7FLT4_1 AAGAGTACGA-GCAAGGACGT 141031256 138462841 2568415 0 0.0344 0.9818 0.0182 0.0000
6 ColoN_FFPE_L02_RNA_01_B23LG7FLT4_1 CACGAGAAGT-GTCTGCGTAG 10044233 9754789 289444 0 0.0025 0.9712 0.0288 0.0000
6 ColoN_FFPE_L07_RNA_01_B23LG7FLT4_1 GACAATTAGC-CCGGTCATGA 11721775 11488387 233388 0 0.0029 0.9801 0.0199 0.0000
6 BreastNP_FFPE_L03_RNA_01_B23LG7FLT4_1 TTCTACCGGC-TACTCGTAAG 10513602 10341620 171982 0 0.0026 0.9836 0.0164 0.0000
6 SkinN_FFPE_L02_RNA_01_B23LG7FLT4_1 GTGAGAGTAT-ATCTGTGAGG 20742433 20355554 386879 0 0.0051 0.9813 0.0187 0.0000
6 SkinN_FFPE_L07_RNA_01_B23LG7FLT4_1 CTGGAGAATA-TCCATACAAC 55542118 54294656 1247462 0 0.0135 0.9775 0.0225 0.0000
6 EndoN_FFPE_L03_RNA_01_B23LG7FLT4_1 TGACAAGAGG-AATCTGTTGG 28309282 27817592 491690 0 0.0069 0.9826 0.0174 0.0000
6 EndoN_FFPE_L08_RNA_01_B23LG7FLT4_1 TGTTCGCTCT-ACTTGCGTGT 10505692 10292982 212710 0 0.0026 0.9798 0.0202 0.0000
6 OvarianN_FFPE_L04_RNA_01_B23LG7FLT4_1 AGGTATTCGG-AGATGTGCGC 125485277 120882339 4602938 0 0.0306 0.9633 0.0367 0.0000
6 HeadNeckN_FFPE_L04_RNA_01_B23LG7FLT4_1 ACGGCCTACA-TCTCACTCTA 14733675 14485845 247830 0 0.0036 0.9832 0.0168 0.0000
6 HeadNeckN_FFPE_L09_RNA_01_B23LG7FLT4_1 CACGTAAGAG-TCAATCCGCG 37041140 34374071 2667069 0 0.0090 0.9280 0.0720 0.0000
6 ColoN_FFPE_L03_RNA_01_B23LG7FLT4_1 AATCGAACTC-ACGAACCTTA 4782075 4677025 105050 0 0.0012 0.9780 0.0220 0.0000
6 ColoN_FFPE_L08_RNA_01_B23LG7FLT4_1 AGGCTGGAGA-CAACTGTCAT 29256478 28725200 531278 0 0.0071 0.9818 0.0182 0.0000
6 BreastNP_FFPE_L04_RNA_01_B23LG7FLT4_1 TAAGCCACGC-TTACGAACGA 9682906 9535203 147703 0 0.0024 0.9847 0.0153 0.0000
6 SkinN_FFPE_L08_RNA_01_B23LG7FLT4_1 TCAATCAGAG-GACTCTGGTT 18653053 18141800 511253 0 0.0045 0.9726 0.0274 0.0000
6 SkinN_FFPE_L04_RNA_01_B23LG7FLT4_1 AACATAAGGC-GTTAGCTTAG 92816254 91049172 1767082 0 0.0226 0.9810 0.0190 0.0000
6 SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1 TTGCAATGCG-CGAGACTTCA 121891826 119148841 2742985 0 0.0297 0.9775 0.0225 0.0000
6 EndoN_FFPE_L01_RNA_01_B23LG7FLT4_1 AACCGGCCTT-TGTTCAGATC 159988357 156938795 3049562 0 0.0390 0.9809 0.0191 0.0000
6 EndoN_FFPE_L04_RNA_01_B23LG7FLT4_1 CATTATCGCT-CGAGTTGCTT 129101582 126921149 2180433 0 0.0315 0.9831 0.0169 0.0000
6 EndoN_FFPE_L05_RNA_01_B23LG7FLT4_1 CATTGAGCTA-ACTTCACATC 7841387 7686071 155316 0 0.0019 0.9802 0.0198 0.0000
6 EndoN_FFPE_L06_RNA_01_B23LG7FLT4_1 CTTCGGAATC-CGTCGGTAAG 54806970 53445618 1361352 0 0.0134 0.9752 0.0248 0.0000
6 EndoN_FFPE_L09_RNA_01_B23LG7FLT4_1 AACCACACTA-CCTCTGCTGA 174449575 171158417 3291158 0 0.0426 0.9811 0.0189 0.0000
6 OvarianNP_FFPE_L01_RNA_01_B23LG7FLT4_1 GTACAGCGGA-CAATCTGTGT 4191945 4126974 64971 0 0.0010 0.9845 0.0155 0.0000
6 OvarianNP_FFPE_L02_RNA_01_B23LG7FLT4_1 ACTTCAACAG-GCGTGAGCAT 4472956 4383055 89901 0 0.0011 0.9799 0.0201 0.0000
6 OvarianNP_FFPE_L05_RNA_01_B23LG7FLT4_1 TGGACAATAG-GAGTCCTGTG 12120980 11862154 258826 0 0.0030 0.9786 0.0214 0.0000
6 HeadNeckN_FFPE_L01_RNA_01_B23LG7FLT4_1 TCACACGGAT-CTTCTGATCG 33431546 32964096 467450 0 0.0082 0.9860 0.0140 0.0000
6 HeadNeckN_FFPE_L02_RNA_01_B23LG7FLT4_1 AGGATACGGT-AACCACGTCA 26986266 26498411 487855 0 0.0066 0.9819 0.0181 0.0000
6 HeadNeckN_FFPE_L05_RNA_01_B23LG7FLT4_1 GCTACAGGTC-TTATGCAGGA 5866325 5736895 129430 0 0.0014 0.9779 0.0221 0.0000
6 HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1 GCCAAGTAAC-TGCGTGATGA 18386667 17880075 506592 0 0.0045 0.9724 0.0276 0.0000
6 OvarianND_FFPE_L01_RNA_01_B23LG7FLT4_1 TTGTGAAGGC-TCGTCAGTAC 238961661 234831405 4130256 0 0.0583 0.9827 0.0173 0.0000
6 OvarianND_FFPE_L02_RNA_01_B23LG7FLT4_1 GTCGACTCCT-TGCCGTTAGC 205920305 199998606 5921699 0 0.0502 0.9712 0.0288 0.0000
6 OvarianND_FFPE_L03_RNA_01_B23LG7FLT4_1 CTGAGCTTGT-CTTCTTGCGT 248379888 244947139 3432749 0 0.0606 0.9862 0.0138 0.0000
6 FFPE_HD789_01_RNA_0004_B23LG7FLT4_1 CCTCTGTCAT-CGTATCGATT 603674655 595426584 8248071 0 0.1473 0.9863 0.0137 0.0000
6 FFPE_V4_0001_RNA_0001_B23LG7FLT4_2 GCAGATGTAA-TACACGCCTC 480690958 470936638 9754320 0 0.1173 0.9797 0.0203 0.0000
6 NTC_0001_0001_B23LG7FLT4_2 CTCATCATCT-TAAGCCTCTA 294119 286445 7674 0 0.0001 0.9739 0.0261 0.0000
6 Undetermined 265289440 265289440 0 0 0.0647 1.0000 0.0000 0.0000
50 rows