File Info

Filename
Demultiplex_Stats.csv
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0008_exp0011/B23LG7FLT4/nfcore_rnafusion__e7be3c7a--20260528-111100/bclconvert/L008/Reports/Demultiplex_Stats.csv
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5.7 KB
Workflow Run
dev_rna_exp0008_exp0011-e7be3c7a_b
Published
May 28, 2026 11:56 AM

Content

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Lane SampleID Index # Reads # Perfect Index Reads # One Mismatch Index Reads # Two Mismatch Index Reads % Reads % Perfect Index Reads % One Mismatch Index Reads % Two Mismatch Index Reads
8 LungN_FFPE_L01_RNA_01_B23LG7FLT4_1 CAACCATACA-ACCGGTTATA 208760267 203452783 5307484 0 0.0506 0.9746 0.0254 0.0000
8 LungN_FFPE_L02_RNA_01_B23LG7FLT4_1 GTAGGCCGTT-GCCACTGTCT 44829782 43914297 915485 0 0.0109 0.9796 0.0204 0.0000
8 LungN_FFPE_L03_RNA_01_B23LG7FLT4_1 CGGATTGATC-AGTCACAACA 155944698 152867142 3077556 0 0.0378 0.9803 0.0197 0.0000
8 BreastNB_FFPE_L01_RNA_01_B23LG7FLT4_1 ACTGGCAAGA-TGTTGTCCAT 13227733 13024144 203589 0 0.0032 0.9846 0.0154 0.0000
8 BreastNB_FFPE_L02_RNA_01_B23LG7FLT4_1 ACAAGAACCT-CGATACTGAA 14099882 13802114 297768 0 0.0034 0.9789 0.0211 0.0000
8 BreastNB_FFPE_L03_RNA_01_B23LG7FLT4_1 AGAGTATGTG-AGATGGCTTC 20240346 19877281 363065 0 0.0049 0.9821 0.0179 0.0000
8 ColoN_FFPE_L01_RNA_01_B23LG7FLT4_2 ACTTAGATCG-CGGAATTCTT 68531155 65892805 2638350 0 0.0166 0.9615 0.0385 0.0000
8 ColoN_FFPE_L06_RNA_01_B23LG7FLT4_2 GATCAACAAG-AAGCACTGTC 33181862 32524017 657845 0 0.0080 0.9802 0.0198 0.0000
8 BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2 ACCTTCGGAC-GACCGTAGAT 4108881 4034406 74475 0 0.0010 0.9819 0.0181 0.0000
8 SkinN_FFPE_L01_RNA_01_B23LG7FLT4_2 TATCATGTCG-TAATCTGCAC 28913096 28449120 463976 0 0.0070 0.9840 0.0160 0.0000
8 EndoN_FFPE_L02_RNA_01_B23LG7FLT4_2 CGTCTAGTAA-TTAATCCAGC 22201319 21867860 333459 0 0.0054 0.9850 0.0150 0.0000
8 OvarianN_FFPE_L03_RNA_01_B23LG7FLT4_2 TCTTAGGTGG-GATCACTGGT 48901723 48149862 751861 0 0.0118 0.9846 0.0154 0.0000
8 HeadNeckN_FFPE_L03_RNA_01_B23LG7FLT4_1 TCGACGTTGG-GATAAGTGTG 18455841 17661670 794171 0 0.0045 0.9570 0.0430 0.0000
8 HeadNeckN_FFPE_L08_RNA_01_B23LG7FLT4_1 AAGAGTACGA-GCAAGGACGT 140507498 137970022 2537476 0 0.0340 0.9819 0.0181 0.0000
8 ColoN_FFPE_L02_RNA_01_B23LG7FLT4_1 CACGAGAAGT-GTCTGCGTAG 9930569 9652115 278454 0 0.0024 0.9720 0.0280 0.0000
8 ColoN_FFPE_L07_RNA_01_B23LG7FLT4_1 GACAATTAGC-CCGGTCATGA 11639068 11409970 229098 0 0.0028 0.9803 0.0197 0.0000
8 BreastNP_FFPE_L03_RNA_01_B23LG7FLT4_1 TTCTACCGGC-TACTCGTAAG 10506907 10341275 165632 0 0.0025 0.9842 0.0158 0.0000
8 SkinN_FFPE_L02_RNA_01_B23LG7FLT4_1 GTGAGAGTAT-ATCTGTGAGG 20665501 20294414 371087 0 0.0050 0.9820 0.0180 0.0000
8 SkinN_FFPE_L07_RNA_01_B23LG7FLT4_1 CTGGAGAATA-TCCATACAAC 55277011 54062470 1214541 0 0.0134 0.9780 0.0220 0.0000
8 EndoN_FFPE_L03_RNA_01_B23LG7FLT4_1 TGACAAGAGG-AATCTGTTGG 28201787 27720545 481242 0 0.0068 0.9829 0.0171 0.0000
8 EndoN_FFPE_L08_RNA_01_B23LG7FLT4_1 TGTTCGCTCT-ACTTGCGTGT 10407358 10202449 204909 0 0.0025 0.9803 0.0197 0.0000
8 OvarianN_FFPE_L04_RNA_01_B23LG7FLT4_1 AGGTATTCGG-AGATGTGCGC 126414246 122127050 4287196 0 0.0306 0.9661 0.0339 0.0000
8 HeadNeckN_FFPE_L04_RNA_01_B23LG7FLT4_1 ACGGCCTACA-TCTCACTCTA 14581896 14343315 238581 0 0.0035 0.9836 0.0164 0.0000
8 HeadNeckN_FFPE_L09_RNA_01_B23LG7FLT4_1 CACGTAAGAG-TCAATCCGCG 37211219 34696213 2515006 0 0.0090 0.9324 0.0676 0.0000
8 ColoN_FFPE_L03_RNA_01_B23LG7FLT4_1 AATCGAACTC-ACGAACCTTA 4725760 4624644 101116 0 0.0011 0.9786 0.0214 0.0000
8 ColoN_FFPE_L08_RNA_01_B23LG7FLT4_1 AGGCTGGAGA-CAACTGTCAT 29033736 28515287 518449 0 0.0070 0.9821 0.0179 0.0000
8 BreastNP_FFPE_L04_RNA_01_B23LG7FLT4_1 TAAGCCACGC-TTACGAACGA 9581726 9439007 142719 0 0.0023 0.9851 0.0149 0.0000
8 SkinN_FFPE_L08_RNA_01_B23LG7FLT4_1 TCAATCAGAG-GACTCTGGTT 18568893 18083083 485810 0 0.0045 0.9738 0.0262 0.0000
8 SkinN_FFPE_L04_RNA_01_B23LG7FLT4_1 AACATAAGGC-GTTAGCTTAG 93845103 92075419 1769684 0 0.0227 0.9811 0.0189 0.0000
8 SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1 TTGCAATGCG-CGAGACTTCA 122402905 119683039 2719866 0 0.0296 0.9778 0.0222 0.0000
8 EndoN_FFPE_L01_RNA_01_B23LG7FLT4_1 AACCGGCCTT-TGTTCAGATC 161023514 158012506 3011008 0 0.0390 0.9813 0.0187 0.0000
8 EndoN_FFPE_L04_RNA_01_B23LG7FLT4_1 CATTATCGCT-CGAGTTGCTT 128487862 126362307 2125555 0 0.0311 0.9835 0.0165 0.0000
8 EndoN_FFPE_L05_RNA_01_B23LG7FLT4_1 CATTGAGCTA-ACTTCACATC 7781089 7628194 152895 0 0.0019 0.9804 0.0196 0.0000
8 EndoN_FFPE_L06_RNA_01_B23LG7FLT4_1 CTTCGGAATC-CGTCGGTAAG 54724306 53384674 1339632 0 0.0133 0.9755 0.0245 0.0000
8 EndoN_FFPE_L09_RNA_01_B23LG7FLT4_1 AACCACACTA-CCTCTGCTGA 173958615 170721670 3236945 0 0.0421 0.9814 0.0186 0.0000
8 OvarianNP_FFPE_L01_RNA_01_B23LG7FLT4_1 GTACAGCGGA-CAATCTGTGT 4145146 4082292 62854 0 0.0010 0.9848 0.0152 0.0000
8 OvarianNP_FFPE_L02_RNA_01_B23LG7FLT4_1 ACTTCAACAG-GCGTGAGCAT 4447298 4361553 85745 0 0.0011 0.9807 0.0193 0.0000
8 OvarianNP_FFPE_L05_RNA_01_B23LG7FLT4_1 TGGACAATAG-GAGTCCTGTG 12098995 11846087 252908 0 0.0029 0.9791 0.0209 0.0000
8 HeadNeckN_FFPE_L01_RNA_01_B23LG7FLT4_1 TCACACGGAT-CTTCTGATCG 33156860 32701912 454948 0 0.0080 0.9863 0.0137 0.0000
8 HeadNeckN_FFPE_L02_RNA_01_B23LG7FLT4_1 AGGATACGGT-AACCACGTCA 26553979 26078486 475493 0 0.0064 0.9821 0.0179 0.0000
8 HeadNeckN_FFPE_L05_RNA_01_B23LG7FLT4_1 GCTACAGGTC-TTATGCAGGA 5797108 5673178 123930 0 0.0014 0.9786 0.0214 0.0000
8 HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1 GCCAAGTAAC-TGCGTGATGA 18286180 17784376 501804 0 0.0044 0.9726 0.0274 0.0000
8 OvarianND_FFPE_L01_RNA_01_B23LG7FLT4_1 TTGTGAAGGC-TCGTCAGTAC 241099374 236961183 4138191 0 0.0584 0.9828 0.0172 0.0000
8 OvarianND_FFPE_L02_RNA_01_B23LG7FLT4_1 GTCGACTCCT-TGCCGTTAGC 206291301 200377772 5913529 0 0.0500 0.9713 0.0287 0.0000
8 OvarianND_FFPE_L03_RNA_01_B23LG7FLT4_1 CTGAGCTTGT-CTTCTTGCGT 247313382 243925702 3387680 0 0.0599 0.9863 0.0137 0.0000
8 FFPE_HD789_01_RNA_0004_B23LG7FLT4_1 CCTCTGTCAT-CGTATCGATT 611120239 602838553 8281686 0 0.1480 0.9864 0.0136 0.0000
8 FFPE_V4_0001_RNA_0001_B23LG7FLT4_2 GCAGATGTAA-TACACGCCTC 488781959 479094809 9687150 0 0.1184 0.9802 0.0198 0.0000
8 NTC_0001_0001_B23LG7FLT4_2 CTCATCATCT-TAAGCCTCTA 290953 283455 7498 0 0.0001 0.9742 0.0258 0.0000
8 Undetermined 279032115 279032115 0 0 0.0676 1.0000 0.0000 0.0000
50 rows